jgi.p|Nanoce1779_2|667927, mRNA_959 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667927
Unique Name	mRNA_959
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2036
Alignment location	scaffold_2:856032..858937 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668013
Track	FilteredModels2
ProteinId	667927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:856032..858937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667927	gene_959	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667927	mRNA_959-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_959	CDS_959	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:856032..858937+
coding sequence from alignment at scaffold_2:856032..858937+

mRNA sequence

>mRNA_959 ID=mRNA_959|Name=jgi.p|Nanoce1779_2|667927|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
TTTTGACATCTGTCCATCACATCTTTTTGTAATCAACGAGAATGTTGCCG
TTCACAACAAGGCTTCATTCTTATTTTCGATTTTCCCTTTCTTTCCATTC
CATCAAACACCGTGGGTGGATAAACGTGTCAATAGACACTTTCACATCAC
CACGCAACACCTCAAAAGACAGAGACGGGAACCTTCACACTTCGTCTTGC
TCAACACAACTTATATTTAGATACTCCCTCTTTTCACCTTCCTCAGACAA
ACACCCACCAACAATCAACCGCATTTACTTCACAACCTTTCCCCTCCTCT
CTCTAATTCCTCTACTTGCGGAGCTTGAGCAATAAACCCTTATTTCCCTT
CACCTTCTTCTGCAACTGAAGCATGCCATACAATAAGGCTTCGGCCGTTG
GCGGGCAGCCAGGAACGTAAATGTCAACAGGCACGATACGGTCGCACCCA
CGGACCACAGCATAGGAGTAATGGTAGTACCCTCCTCCGTTCGCGCATGA
GCCCATCGAAACAACCCACCGGGGTTCAGGCATCTGATCGTAGACCTTGC
GAAGAGCAGGTGCCATCTTGTTGGTGAGCGTACCGGCCACTATCATCACG
TCCGATTGCCTGGGGGACGCACGGAAGACCATGCCGAACCGTTCCATATC
GTACCGTGCGGCCGCCGAGTGCATCATTTCCACGGCACAGCAGGCCAGGC
CGAAGGTCATAGGCCACAACGAGCCCTTGCGCGCCCAATTTACCAAGTCG
TCTACCTTGGACACGACGTACTCGACGCCGTTCTTGGTCTTGAGGAGTTG
GTCCACGCCGCCCGTGGCCTTGGTAACCTCGGTGCTTTGCGGCGCCGGCC
GCGAGGCATGCAGGGCCTTGCTGCTAGTCCGGATTATGCTGTAGCTGCTC
CTGGTGATGGCCCCAAAGGCGGCGTTGCTGGACAGCAATGCGGCTCGGGA
CGCACGCATGAAAGACATGGCTAGAAGTCTCTCCGCGGAGTGTTTAGAGA
TGTAGAATAACGAGACTCTGGGGAAGCAAGTTACTTGGGCACGCCCACAA
AAGCTGGAGACCAAGTGCGCCCTACCTGCTGGTATCTTGATAGAGTCGTG
CCCGTCTTACTGTGCGTGGTCAGGGATTGGAGATGAGGGTGAGAAAGAAG
CCTGTTGGGAGCGAGGTGCTGAGGTGGAGAGGAAGTCGGGCAAGGGGGTA
AAAATATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACAC
ATGTCGTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGAC
GCTGGTCAAAGAATATGCGGGGAAAGCGCCCGCTTTTACGACACGAAAAC
GCATGGAGCTCAATGGCCCGCCCCCTATCTGTCCATCCTGTACGCATGCA
CACCACCCGGCGCAAAAGTGCCCGGTGTGTGGGCACCGCGGCAAGGGAAA
AACGTACCTTCTCGTAGCCAAGACGACCGCCCCGTCCTGCGCGACGCTGC
ACTTTGAAAGCTTCGACCAACGGCATGAAGCCCAGGCATTCAAGAGCTTG
TGGGCCTTGGCAAGGATAGTGCGGAACCGGGTCTTTGTCGAGGAAGGCCG
GATTGCCGCAGAATTAGAATTTGACGTCAACGATCGAAGCAGCCGCCATG
TGCTTGGCCTTGTGGGGGATGCCCCCGTCCTCTGTGCACGGTGGAGGGTT
GAATTCGGAGAAGGGGGAAGTGGAGGTGGACAACAGCAGGGGAAAGGCAG
TGGAGGGGGGTGCTCTATAGCAGTAATTGACCGATTGGCAGTGTTGGAGC
CGTACCGTGGGAGGGGTTTTTCCTCTCATACACTCAAGTTTTTGTTGGAG
GATGTAGATTGCATGGCTCGAGAGATGCAACCACAAGGATGGACGATTGG
TGCGGTGGCTGTGACACTTCCGGAGAAGATGTTACCGTTCTGGGGAGAGA
AGCTGCGAAGCCAGGGTGGATTTGAAGTGGTTGGAGGCTCGTATACTGAT
GAGAGGAATCAGCTGATGCTGAGAATGAATACGTAG

protein sequence of jgi.p|Nanoce1779_2|667927

>mRNA_959-protein ID=mRNA_959-protein|Name=jgi.p|Nanoce1779_2|667927|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MQLYVSFLRTATKLHMSSPRLCVACVVVLMLTLVKEYAGKAPAFTTRKRM
ELNGPPPICPSCTHAHHPAQKCPVCGHRGKGKTYLLVAKTTAPSCATLHF
ESFDQRHEAQAFKSLWALARIVRNRVFVEEGRIAAELEFDVNDRSSRHVL
GLVGDAPVLCARWRVEFGEGGSGGGQQQGKGSGGGCSIAVIDRLAVLEPY
RGRGFSSHTLKFLLEDVDCMAREMQPQGWTIGAVAVTLPEKMLPFWGEKL
RSQGGFEVVGGSYTDERNQLMLRMNT*

mRNA from alignment at scaffold_2:856032..858937+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_959 ID=mRNA_959|Name=jgi.p|Nanoce1779_2|667927|organism=Nannochloropsis oceanica|type=mRNA|length=2906bp|location=Sequence derived from alignment at scaffold_2:856032..858937+ (Nannochloropsis oceanica)
TTTTGACATCTGTCCATCACATCTTTTTGTAATCAACGAGAATGTTGCCG
TTCACAACAAGGCTTCATTCTTATTTTCGATTTTCCCTTTCTTTCCATTC
CATCAAACACCGTGGGTGGATAAACGTGTCAATAGACACTTTCACATCAC
CACGCAACACCTCAAAAGACAGAGACGGGAACCTTCACACTTCGTCTTGC
TCAACACAACTTATATTTAGATACTCCCTCTTTTCACCTTCCTCAGACAA
ACACCCACCAACAATCAACCGCATTTACTTCACAACCTTTCCCCTCCTCT
CTCTAATTCCTCTACTTGCGGAGCTTGAGCAATAAACCCTTATTTCCCTT
CACCTTCTTCTGCAACTGAAGCATGCCATACAATAAGGCTTCGGCCGTTG
GCGGGCAGCCAGGAACGTAAATGTCAACAGGCACGATACGGTCGCACCCA
CGGACCACAGCATAGGAGTAATGGTAGTACCCTCCTCCGTTCGCGCATGA
GCCCATCGAAACAACCCACCGGGGTTCAGGCATCTGATCGTAGACCTTGC
GAAGAGCAGGTGCCATCTTGTTGGTGAGCGTACCGGCCACTATCATCACG
TCCGATTGCCTGGGGGACGCACGGAAGACCATGCCGAACCGTTCCATATC
GTACCGTGCGGCCGCCGAGTGCATCATTTCCACGGCACAGCAGGCCAGGC
CGAAGGTCATAGGCCACAACGAGCCCTTGCGCGCCCAATTTACCAAGTCG
TCTACCTTGGACACGACGTACTCGACGCCGTTCTTGGTCTTGAGGAGTTG
GTCCACGCCGCCCGTGGCCTTGGTAACCTCGGTGCTTTGCGGCGCCGGCC
GCGAGGCATGCAGGGCCTTGCTGCTAGTCCGGATTATGCTGTAGCTGCTC
CTGGTGATGGCCCCAAAGGCGGCGTTGCTGGACAGCAATGCGGCTCGGGA
CGCACGCATGAAAGACATGGCTAGAAGTCTCTCCGCGGAGTGTTTAGAGA
TGTAGAATAACGAGACTCTGGGGAAGCAAGTTACTTGGGCACGCCCACAA
AAGCTGGAGACCAAGTGCGCCCTACCTGCTGGTATCTTGATAGAGTCGTG
CCCGTCTTACTGTGCGTGGTCAGGGATTGGAGATGAGGGTGAGAAAGAAG
CCTGTTGGGAGCGAGGTGCTGAGGTGGAGAGGAAGTCGGGCAAGGGGGTA
AAAATATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACAC
ATGTCGTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGAC
GCTGGTCAAAGAATATGCGGGGAAAGTGACAAGGCAGACGAGATCTAATA
ATGCGAGAAACCCTGCATCATGTCGCGGACGTGAGGAACTCGTTTTTAAG
AGGAAATTAATAAGTGTTCGGGTCCTCCCCTTACAATTTCTTACCCAATT
TCAAAATCCGATTTGCACACAGGAGCTGTCTTGGCCTTACACGACGACCG
TCACGACGTCCGCAAGGTCTTGGCTGTGCCGATTATTTTGGTAATTGAGT
CCTCCTTTCCACGCAACGACGGGTCCTGGGCCTCACCCTCTCCGCGCACA
CTCCAACGCAGGCGCCCGCTTTTACGACACGAAAACGCATGGAGCTCAAT
GGCCCGCCCCCTATCTGTCCATCCTGTACGCATGCACACCACCCGGTAAG
TCGTTTGGTCCTCCATTTTACTGCCTGCCTCCACTCCGCATCTGTTATTC
CAAGTCGGTTCATGGAGGAGTTTGCCTGTCTGTGTGTCTTTTGTGTACAC
ATTATATGCTAAGCACTCTTATTCGTGTACTGTAAATTGCGTGACCCATC
ATTTACATTCTTACAAATCCCTACTTACCATATCGGTCCAGGCGCAAAAG
TGCCCGGTGTGTGGGCACCGCGGCAAGGGAAAAACGTACCTTCTCGTAGC
CAAGACGACCGCCCCGTCCTGCGCGACGCTGCACTTTGAAAGCTTCGACC
AACGGCATGAAGCCCAGGCATTCAAGAGCTTGTGGGCCTTGGCAAGGATA
GTGCGGAACCGGGTCTTTGTCGAGGAAGGCCGGATTGCCGCAGAATTAGA
ATTTGACGTCAACGATCGAAGCAGCCGCCATGTGCTTGGCCTTGTGGGGG
ATGCCCCCGTCCTCTGTGCACGGTGGAGGGTTGAATTCGGAGAAGGGGGA
AGTGGAGGTGGACAACAGCAGGGGAAAGGCAGTGGAGGGGGGTGCTCTAT
AGCAGTAATTGACCGATTGGCAGTGTTGGAGCCGTACCGTGGGAGGGGTT
TTTCCTCTCATACACTCAAGTTTTTGTTGGAGGATGTAGATTGCATGGCT
CGAGAGATGCAACCACAAGGATGGACGATTGGTGCGGTGGCTGTGACACT
TCCGGAGAAGATGTTACCGTTCTGGGGAGAGAAGCTGCGAAGCCAGGGTG
GATTTGAAGTGGTTGGAGGCTCGTATACTGATGAGAGGAATCAGCTGATG
CTGAGAATGGTACGGCTGATGTCTTAGAAGGCTTAAGATGGTGAGAACAC
AGAGCAAGAGTAAAGGCGCATGGCTCCGTGCGAGAGAAACGAAGAGGGAT
GAAGGGCGCACGGGTACAGAGAGGGAGAGTGGTGAAGGAAGACGCGGTGA
GGCAAGCAAGCAGACCAGGAATAATCCAAATGTCGGGAAAAATACTGTAC
ATCTTAGCGAAAGTAGAAATCTGTGTATTTATATTGTTCTAACAGTACGA
AGCACTTCAATCATCATAAGCAAATCCCCACTTCCGATCGCCCGGCCCGA
AGGAAGGAAAGACAGAAGGGAAAATGCCGAACAATCTGAGAGAAATAGCG
AGGATTTCCTCCATAATAATGTAACAATCCTGCGCCCATTGTGCGAGAAT
ACGTAG

Coding sequence (CDS) from alignment at scaffold_2:856032..858937+

>mRNA_959 ID=mRNA_959|Name=jgi.p|Nanoce1779_2|667927|organism=Nannochloropsis oceanica|type=CDS|length=3324bp|location=Sequence derived from alignment at scaffold_2:856032..858937+ (Nannochloropsis oceanica)
ATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACACATGTC
GTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGACGCTGG
TCAAAGAATATGCGGGGAAAGCGCCCGCTTTTACGACACGAAAACGCATG
GAGCTCAATGGCCCGCCCCCTATCTGTCCATCCTGTACGCATGCACACCA
CCCGGCGCAAAAGTGCCCGGTGTGTGGGCACCGCGGCAAGGGAAAAACGT
ACCTTCTCGTAGCCAAGACGACCGCCCCGTCCTGCGCGACGCTGCACTTT
GAAAGCTTCGACCAACGGCATGAAGCCCAGGCATTCAAGAGCTTGTGGGC
CTTGGCAAGGATAGTGCGGAACCGGGTCTTTGTCGAGGAAGGCCGGATTG
CCGCAGAATTAGAATTTGACGTCAACGATCGAAGCAGCCGCCATGTGCTT
GGCCTTGTGGGGGATGCCCCCGTCCTCTGTGCACGGTGGAGGGTTGAATT
CGGAGAAGGGGGAAGTGGAGGTGGACAACAGCAGGGGAAAGGCAGTGGAG
GGGGGTGCTCTATAGCAGTAATTGACCGATTGGCAGTGTTGGAGCCGTAC
CGTGGGAGGGGTTTTTCCTCTCATACACTCAAGTTTTTGTTGGAGGATGT
AGATTGCATGGCTCGAGAGATGCAACCACAAGGATGGACGATTGGTGCGG
TGGCTGTGACACTTCCGGAGAAGATGTTACCGTTCTGGGGAGAGAAGCTG
CGAAGCCAGGGTGGATTTGAAGTGGTTGGAGGCTCGTATACTGATGAGAG
GAATCAGCTGATGCTGAGAATGAATACGTAGATGCAGCTCTACGTGTCAT
TTCTGCGCACCGCCACCAAGCTACACATGTCGTCTCCGCGCTTGTGTGTA
GCCTGTGTAGTGGTGCTGATGCTGACGCTGGTCAAAGAATATGCGGGGAA
AGCGCCCGCTTTTACGACACGAAAACGCATGGAGCTCAATGGCCCGCCCC
CTATCTGTCCATCCTGTACGCATGCACACCACCCGGCGCAAAAGTGCCCG
GTGTGTGGGCACCGCGGCAAGGGAAAAACGTACCTTCTCGTAGCCAAGAC
GACCGCCCCGTCCTGCGCGACGCTGCACTTTGAAAGCTTCGACCAACGGC
ATGAAGCCCAGGCATTCAAGAGCTTGTGGGCCTTGGCAAGGATAGTGCGG
AACCGGGTCTTTGTCGAGGAAGGCCGGATTGCCGCAGAATTAGAATTTGA
CGTCAACGATCGAAGCAGCCGCCATGTGCTTGGCCTTGTGGGGGATGCCC
CCGTCCTCTGTGCACGGTGGAGGGTTGAATTCGGAGAAGGGGGAAGTGGA
GGTGGACAACAGCAGGGGAAAGGCAGTGGAGGGGGGTGCTCTATAGCAGT
AATTGACCGATTGGCAGTGTTGGAGCCGTACCGTGGGAGGGGTTTTTCCT
CTCATACACTCAAGTTTTTGTTGGAGGATGTAGATTGCATGGCTCGAGAG
ATGCAACCACAAGGATGGACGATTGGTGCGGTGGCTGTGACACTTCCGGA
GAAGATGTTACCGTTCTGGGGAGAGAAGCTGCGAAGCCAGGGTGGATTTG
AAGTGGTTGGAGGCTCGTATACTGATGAGAGGAATCAGCTGATGCTGAGA
ATGAATACGTAGATGCAGCTCTACGTGTCATTTCTGCGCACCGCCACCAA
GCTACACATGTCGTCTCCGCGCTTGTGTGTAGCCTGTGTAGTGGTGCTGA
TGCTGACGCTGGTCAAAGAATATGCGGGGAAAGCGCCCGCTTTTACGACA
CGAAAACGCATGGAGCTCAATGGCCCGCCCCCTATCTGTCCATCCTGTAC
GCATGCACACCACCCGGCGCAAAAGTGCCCGGTGTGTGGGCACCGCGGCA
AGGGAAAAACGTACCTTCTCGTAGCCAAGACGACCGCCCCGTCCTGCGCG
ACGCTGCACTTTGAAAGCTTCGACCAACGGCATGAAGCCCAGGCATTCAA
GAGCTTGTGGGCCTTGGCAAGGATAGTGCGGAACCGGGTCTTTGTCGAGG
AAGGCCGGATTGCCGCAGAATTAGAATTTGACGTCAACGATCGAAGCAGC
CGCCATGTGCTTGGCCTTGTGGGGGATGCCCCCGTCCTCTGTGCACGGTG
GAGGGTTGAATTCGGAGAAGGGGGAAGTGGAGGTGGACAACAGCAGGGGA
AAGGCAGTGGAGGGGGGTGCTCTATAGCAGTAATTGACCGATTGGCAGTG
TTGGAGCCGTACCGTGGGAGGGGTTTTTCCTCTCATACACTCAAGTTTTT
GTTGGAGGATGTAGATTGCATGGCTCGAGAGATGCAACCACAAGGATGGA
CGATTGGTGCGGTGGCTGTGACACTTCCGGAGAAGATGTTACCGTTCTGG
GGAGAGAAGCTGCGAAGCCAGGGTGGATTTGAAGTGGTTGGAGGCTCGTA
TACTGATGAGAGGAATCAGCTGATGCTGAGAATGAATACGTAGATGCAGC
TCTACGTGTCATTTCTGCGCACCGCCACCAAGCTACACATGTCGTCTCCG
CGCTTGTGTGTAGCCTGTGTAGTGGTGCTGATGCTGACGCTGGTCAAAGA
ATATGCGGGGAAAGCGCCCGCTTTTACGACACGAAAACGCATGGAGCTCA
ATGGCCCGCCCCCTATCTGTCCATCCTGTACGCATGCACACCACCCGGCG
CAAAAGTGCCCGGTGTGTGGGCACCGCGGCAAGGGAAAAACGTACCTTCT
CGTAGCCAAGACGACCGCCCCGTCCTGCGCGACGCTGCACTTTGAAAGCT
TCGACCAACGGCATGAAGCCCAGGCATTCAAGAGCTTGTGGGCCTTGGCA
AGGATAGTGCGGAACCGGGTCTTTGTCGAGGAAGGCCGGATTGCCGCAGA
ATTAGAATTTGACGTCAACGATCGAAGCAGCCGCCATGTGCTTGGCCTTG
TGGGGGATGCCCCCGTCCTCTGTGCACGGTGGAGGGTTGAATTCGGAGAA
GGGGGAAGTGGAGGTGGACAACAGCAGGGGAAAGGCAGTGGAGGGGGGTG
CTCTATAGCAGTAATTGACCGATTGGCAGTGTTGGAGCCGTACCGTGGGA
GGGGTTTTTCCTCTCATACACTCAAGTTTTTGTTGGAGGATGTAGATTGC
ATGGCTCGAGAGATGCAACCACAAGGATGGACGATTGGTGCGGTGGCTGT
GACACTTCCGGAGAAGATGTTACCGTTCTGGGGAGAGAAGCTGCGAAGCC
AGGGTGGATTTGAAGTGGTTGGAGGCTCGTATACTGATGAGAGGAATCAG
CTGATGCTGAGAATGAATACGTAG

Synonyms

Publications