jgi.p|Nanoce1779_2|598905, mRNA_7480 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598905
Unique NamemRNA_7480
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length349
Alignment locationscaffold_20:66994..67607 -

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Properties
Property NameValue
TranscriptId598991
TrackFilteredModels2
ProteinId598905
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:66994..67607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598905gene_7480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598905mRNA_7480-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7480CDS_7480Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7480 ID=mRNA_7480|Name=jgi.p|Nanoce1779_2|598905|organism=Nannochloropsis oceanica|type=mRNA|length=349bp
ACAGGCAAACCATGCATCTCATGTATTACACGGACGCGGCCGGAAAGCGA
GTCTATACGCTCAGGAAGGAGACGCCCACTGGCGAGATTACCTACTCGGC
TCACCCTGCCCGCTTCTCCCCCGACGACAAGTTCTCCAAGCAGCGCCTTA
CCCTCAAGAAGCGTTTCAATATCTTGCCCACGCAACAAGGGGAGCGTGTG
CTCTAAGGGAAGACTTTGCATGACTGGCTGCTGCTGGTGTGGAGCACGTC
CTACCTGCACAGCAACAAGTGAAAGACTAAGCAGATGAGAAAAGAGAAAG
GTCTCTTGTGTGTACAAAAGAAGGAAATAACCATAATTCGGATAGAAAA
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protein sequence of jgi.p|Nanoce1779_2|598905

>mRNA_7480-protein ID=mRNA_7480-protein|Name=jgi.p|Nanoce1779_2|598905|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MHLMYYTDAAGKRVYTLRKETPTGEITYSAHPARFSPDDKFSKQRLTLKK
RFNILPTQQGERVL*
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mRNA from alignment at scaffold_20:66994..67607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7480 ID=mRNA_7480|Name=jgi.p|Nanoce1779_2|598905|organism=Nannochloropsis oceanica|type=mRNA|length=614bp|location=Sequence derived from alignment at scaffold_20:66994..67607- (Nannochloropsis oceanica)
ACAGGCAAACCATGCATCTCATGTATTACACGGACGCGGCCGGAAAGCGA
GTCTATACGCTCAGGAAGGAGACGCCCACTGGCGAGATTACCTACTCGGC
TCACCCTGGTAAGAAAGATGACCACAGATGGAAGGAGAAGGGAAAAGGGG
AGTGTGGGGATGGAGAGGATGGCTTGTGCTGAGCTCGTGTCTTGAGATAC
GTCTGGACCTCTCCTGAGGAACAGTCAAGCGTCACCTACGCATCGTGGAA
AAGAATGGAGAGAGCTGGGGCGGAAGGTGGGGCCACAAGAATGCATCGTT
GGTTGTCATGATCTGCGCGGTCTCGCACTCACTCGCACCTCAATCCTTGC
CCCGTTATCTTACCTCAACACAGCCCGCTTCTCCCCCGACGACAAGTTCT
CCAAGCAGCGCCTTACCCTCAAGAAGCGTTTCAATATCTTGCCCACGCAA
CAAGGGGAGCGTGTGCTCTAAGGGAAGACTTTGCATGACTGGCTGCTGCT
GGTGTGGAGCACGTCCTACCTGCACAGCAACAAGTGAAAGACTAAGCAGA
TGAGAAAAGAGAAAGGTCTCTTGTGTGTACAAAAGAAGGAAATAACCATA
ATTCGGATAGAAAA
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Coding sequence (CDS) from alignment at scaffold_20:66994..67607-

>mRNA_7480 ID=mRNA_7480|Name=jgi.p|Nanoce1779_2|598905|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_20:66994..67607- (Nannochloropsis oceanica)
CCCGCTTCTCCCCCGACGACAAGTTCTCCAAGCAGCGCCTTACCCTCAAG
AAGCGTTTCAATATCTTGCCCACGCAACAAGGGGAGCGTGTGCTCTAAAT
GCATCTCATGTATTACACGGACGCGGCCGGAAAGCGAGTCTATACGCTCA
GGAAGGAGACGCCCACTGGCGAGATTACCTACTCGGCTCACCCTGCCCGC
TTCTCCCCCGACGACAAGTTCTCCAAGCAGCGCCTTACCCTCAAGAAGCG
TTTCAATATCTTGCCCACGCAACAAGGGGAGCGTGTGCTCTAAATGCATC
TCATGTATTACACGGACGCGGCCGGAAAGCGAGTCTATACGCTCAGGAAG
GAGACGCCCACTGGCGAGATTACCTACTCGGCTCACCCTG
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Synonyms
Publications