jgi.p|Nanoce1779_2|599692, mRNA_7694 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599692
Unique NamemRNA_7694
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1650
Alignment locationscaffold_21:105043..106837 -

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Properties
Property NameValue
TranscriptId599778
TrackFilteredModels2
ProteinId599692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:105043..106837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599692gene_7694Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599692mRNA_7694-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7694CDS_7694Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7694 ID=mRNA_7694|Name=jgi.p|Nanoce1779_2|599692|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp
AGCTCGCCGCAGACACTCAGAAATCCTCTAGATTGGGCAAATCTCTATGG
TTTACAGGCCTGGATAGGCGGAGTGAGTCATCGTGATAGGAGAAATGCGG
GACTCCACCCTATGCTTCGGTATTGCTTGGCTGCCTGCCCGCCTGCTGAT
GCGACCGACCGCGAGTGGGTGATGGATGATGAATGAAGGCGAGCGATCTG
CCGGAGGTGAAATTGACCCGATGAACTGGATCATCCAGGGACTCATACAT
TCAGTCTAGACAGGATTGTTACGTACCTCGTACCTATCGACGCTGAGGCC
GTTCCTGCTAGCCTACAGCTACGTCAGTCTTGGGTCTGTGTTCGCCATCA
TCCACGCTCTCTCATCATTCCTCCGAGTCCTCGCTGTCATCGCCCATTCG
ATTTGATGCAAGCTCCCTTCCCGCCATCATACGCTGTACGCAGATAGCTC
AGGCCCGGATAGGGCGCTGCTGCTACCGACATGGCACACACTCCTCCTCC
CGCTTCTCCAAATGCTTCGCCCATCTTCGTTTTTGCTTTGGCCCTGGCAG
TTCGTGTGGGGATGTTGGGCGTGGGAGCCTGGATGGACCGGGCGTCGAGC
AGCGTCAAGTACACAGACATTGACTACCTGGTCTTCAGTGACGCGGCACG
TTTTTTATACCAAGGCGGGTCGCCTTACGAGCGGGACACATATCGATACA
CGCCGTTTTTGGCTTGTCTTATGCTGCCCAACCTGTGGCTGCACCCGGCC
TGGGGAAAGGTTCTCTTCATCGCGTCTGACTTGGTTGTGGGTTTGCTGGT
CATGCGCATTTCTGCTTGGACAACGCATTACCCATCATTATTAATTGCAT
CAGCAGCAAAACGGGGGAGCGTCCCTCCAACCGCCGCCTCTTGGTACTCC
CATCCCCTTCTCCACGCTGCCCTCTGGCTCCTCAACCCCCTCGTCATCAA
CTTTTCCACCCGGGGCAGCGCAGATACTCTGGTCAGTGCGTTAGTACTTG
CCACCGTCCTCTTCGTCCAACAAAATCGACCTGTCCTGGCGGGAGTTTTC
CATGGAGCAGCGGTGCATTTTAAATTGTACCCTATTGTCTTCTCCATTTC
CTTTCTGGCGGCCTTGTCCTCGGCTCGGCCTGCAGAAGTAGATGAGGAAG
ATAGGAAAACCCGCCTGTTCTGGCGTCGCCTTAAAATGGTTATCGATAAG
GAATGCATTCTCTTTACAGTTACTTTGAAAGCGAAACTAGTCGGCACCTC
CTCGGTCTAGCAGCCTTTCTCCCTCAAGTCCTCCTCCTTGCCTACACCTC
CTTCCTCCTCGGCCCCCGCGACCTCCCCTTCTGCATCGCAATCCAAACCA
TGATTTTTGTCGCCTTCAACAAAGTCTGCACCGCTCAATACTTCGCCTGG
TACTTCTCCATCCTTCCCGCTGCGGGTCCCACTTTAGCCTCTCTCCCTTC
TTCCCATCCTCCTTACCTCCCTCTTATCTTGGCGGGGGCATGGCTTGCGG
CGGTAGGGGGGTGGTTGTGGTGTGCATATCAGCTTGAGTTTCTGGGGGAG
AATACATTCTTCTGGACGTGGATCATGTCGATTACTTTTTTGGGGGTGAA
TGTCGCGGTGCTTGCATGGTTGCTGGAAATGTGGGGGAAAGGGCAACGGG
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protein sequence of jgi.p|Nanoce1779_2|599692

>mRNA_7694-protein ID=mRNA_7694-protein|Name=jgi.p|Nanoce1779_2|599692|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MAHTPPPASPNASPIFVFALALAVRVGMLGVGAWMDRASSSVKYTDIDYL
VFSDAARFLYQGGSPYERDTYRYTPFLACLMLPNLWLHPAWGKVLFIASD
LVVGLLVMRISAWTTHYPSLLIASAAKRGSVPPTAASWYSHPLLHAALWL
LNPLVINFSTRGSADTLVSALVLATVLFVQQNRPVLAGVFHGAAVHFKLY
PIVFSISFLAALSSARPAEVDEEDRKTRLFWRRLKMVIDKECILFTVTLK
AKLVGTSSV*
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mRNA from alignment at scaffold_21:105043..106837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7694 ID=mRNA_7694|Name=jgi.p|Nanoce1779_2|599692|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_21:105043..106837- (Nannochloropsis oceanica)
AGCTCGCCGCAGACACTCAGAAATCCTCTAGATTGGGCAAATCTCTATGG
TTTACAGGCCTGGATAGGCGGAGTGAGTCATCGTGATAGGAGAAATGCGG
GACTCCACCCTATGCTTCGGTATTGCTTGGCTGCCTGCCCGCCTGCTGAT
GCGACCGACCGCGAGTGGGTGATGGATGATGAATGAAGGCGAGCGATCTG
CCGGAGGTGAAATTGACCCGATGAACTGGATCATCCAGGGACTCATACAT
TCAGTCTAGACAGGATTGTTACGTACCTCGTACCTATCGACGCTGAGGCC
GTTCCTGCTAGCCTACAGCTACGTCAGTCTTGGGTCTGTGTTCGCCATCA
TCCACGCTCTCTCATCATTCCTCCGAGTCCTCGCTGTCATCGCCCATTCG
ATTTGATGCAAGCTCCCTTCCCGCCATCATACGCTGTACGCAGATAGCTC
AGGCCCGGATAGGGCGCTGCTGCTACCGACATGGCACACACTCCTCCTCC
CGCTTCTCCAAATGCTTCGCCCATCTTCGTTTTTGCTTTGGCCCTGGCAG
TTCGTGTGGGGATGTTGGGCGTGGGAGCCTGGATGGACCGGGCGTCGAGC
AGCGTCAAGTACACAGACATTGACTACCTGGTCTTCAGTGACGCGGCACG
TTTTTTATACCAAGGCGGGTCGCCTTACGAGCGGGACACATATCGATACA
CGCCGTTTTTGGCTTGTCTTATGCTGCCCAACCTGTGGCTGCACCCGGCC
TGGGGAAAGGTTCTCTTCATCGCGTCTGACTTGGTTGTGGGTTTGCTGGT
CATGCGCATTTCTGCTTGGACAACGCATTACCCATCATTATTAATTGCAT
CAGCAGCAAAACGGGGGAGCGTCCCTCCAACCGCCGCCTCTTGGTACTCC
CATCCCCTTCTCCACGCTGCCCTCTGGCTCCTCAACCCCCTCGTCATCAA
CTTTTCCACCCGGGGCAGCGCAGATACTCTGGTCAGTGCGTTAGTACTTG
CCACCGTCCTCTTCGTCCAACAAAATCGACCTGTCCTGGCGGGAGTTTTC
CATGGAGCAGCGGTGCATTTTAAATTGTACCCTATTGTCTTCTCCATTTC
CTTTCTGGCGGCCTTGTCCTCGGCTCGGCCTGCAGAAGTAGATGAGGAAG
ATAGGAAAACCCGCCTGTTCTGGCGTCGCCTTAAAATGGTTATCGATAAG
GAATGCATTCTCTTTACAGTTGTAAGTGCAATGACCTTCCTTTTTCTCAC
CCTCCTTGCCTTCCTCCTCTACGGCCAGTCCTTCCTCCAACACGGCCTTC
TTTACCACCTCACCCGTACCGACAACCGCCACAATTTTTCCCCGTGGTTC
TACGGAATCTACCTAGACTTTGAAAGCGAAACTAGTCGGCACCTCCTCGG
TCTAGCAGCCTTTCTCCCTCAAGTCCTCCTCCTTGCCTACACCTCCTTCC
TCCTCGGCCCCCGCGACCTCCCCTTCTGCATCGCAATCCAAACCATGATT
TTTGTCGCCTTCAACAAAGTCTGCACCGCTCAATACTTCGCCTGGTACTT
CTCCATCCTTCCCGCTGCGGGTCCCACTTTAGCCTCTCTCCCTTCTTCCC
ATCCTCCTTACCTCCCTCTTATCTTGGCGGGGGCATGGCTTGCGGCGGTA
GGGGGGTGGTTGTGGTGTGCATATCAGCTTGAGTTTCTGGGGGAGAATAC
ATTCTTCTGGACGTGGATCATGTCGATTACTTTTTTGGGGGTGAATGTCG
CGGTGCTTGCATGGTTGCTGGAAATGTGGGGGAAAGGGCAACGGG
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Coding sequence (CDS) from alignment at scaffold_21:105043..106837-

>mRNA_7694 ID=mRNA_7694|Name=jgi.p|Nanoce1779_2|599692|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_21:105043..106837- (Nannochloropsis oceanica)
ACTTTGAAAGCGAAACTAGTCGGCACCTCCTCGGTCTAGATGGCACACAC
TCCTCCTCCCGCTTCTCCAAATGCTTCGCCCATCTTCGTTTTTGCTTTGG
CCCTGGCAGTTCGTGTGGGGATGTTGGGCGTGGGAGCCTGGATGGACCGG
GCGTCGAGCAGCGTCAAGTACACAGACATTGACTACCTGGTCTTCAGTGA
CGCGGCACGTTTTTTATACCAAGGCGGGTCGCCTTACGAGCGGGACACAT
ATCGATACACGCCGTTTTTGGCTTGTCTTATGCTGCCCAACCTGTGGCTG
CACCCGGCCTGGGGAAAGGTTCTCTTCATCGCGTCTGACTTGGTTGTGGG
TTTGCTGGTCATGCGCATTTCTGCTTGGACAACGCATTACCCATCATTAT
TAATTGCATCAGCAGCAAAACGGGGGAGCGTCCCTCCAACCGCCGCCTCT
TGGTACTCCCATCCCCTTCTCCACGCTGCCCTCTGGCTCCTCAACCCCCT
CGTCATCAACTTTTCCACCCGGGGCAGCGCAGATACTCTGGTCAGTGCGT
TAGTACTTGCCACCGTCCTCTTCGTCCAACAAAATCGACCTGTCCTGGCG
GGAGTTTTCCATGGAGCAGCGGTGCATTTTAAATTGTACCCTATTGTCTT
CTCCATTTCCTTTCTGGCGGCCTTGTCCTCGGCTCGGCCTGCAGAAGTAG
ATGAGGAAGATAGGAAAACCCGCCTGTTCTGGCGTCGCCTTAAAATGGTT
ATCGATAAGGAATGCATTCTCTTTACAGTTACTTTGAAAGCGAAACTAGT
CGGCACCTCCTCGGTCTAGATGGCACACACTCCTCCTCCCGCTTCTCCAA
ATGCTTCGCCCATCTTCGTTTTTGCTTTGGCCCTGGCAGTTCGTGTGGGG
ATGTTGGGCGTGGGAGCCTGGATGGACCGGGCGTCGAGCAGCGTCAAGTA
CACAGACATTGACTACCTGGTCTTCAGTGACGCGGCACGTTTTTTATACC
AAGGCGGGTCGCCTTACGAGCGGGACACATATCGATACACGCCGTTTTTG
GCTTGTCTTATGCTGCCCAACCTGTGGCTGCACCCGGCCTGGGGAAAGGT
TCTCTTCATCGCGTCTGACTTGGTTGTGGGTTTGCTGGTCATGCGCATTT
CTGCTTGGACAACGCATTACCCATCATTATTAATTGCATCAGCAGCAAAA
CGGGGGAGCGTCCCTCCAACCGCCGCCTCTTGGTACTCCCATCCCCTTCT
CCACGCTGCCCTCTGGCTCCTCAACCCCCTCGTCATCAACTTTTCCACCC
GGGGCAGCGCAGATACTCTGGTCAGTGCGTTAGTACTTGCCACCGTCCTC
TTCGTCCAACAAAATCGACCTGTCCTGGCGGGAGTTTTCCATGGAGCAGC
GGTGCATTTTAAATTGTACCCTATTGTCTTCTCCATTTCCTTTCTGGCGG
CCTTGTCCTCGGCTCGGCCTGCAGAAGTAGATGAGGAAGATAGGAAAACC
CGCCTGTTCTGGCGTCGCCTTAAAATGGTTATCGATAAGGAATGCATTCT
CTTTACAGTT
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Synonyms
Publications