jgi.p|Nanoce1779_2|641416, mRNA_7790 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|641416
Unique Name	mRNA_7790
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2547
Alignment location	scaffold_21:337139..339685 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	641502
Track	FilteredModels2
ProteinId	641416

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:337139..339685 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641416	gene_7790	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7790	CDS_7790	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|641416	mRNA_7790-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:337139..339685-
coding sequence from alignment at scaffold_21:337139..339685-

mRNA sequence

>mRNA_7790 ID=mRNA_7790|Name=jgi.p|Nanoce1779_2|641416|organism=Nannochloropsis oceanica|type=mRNA|length=2547bp
ATGCAGGGCGGCGAACCTGCAGCGCCGTACACAGTAGGAGCGGCAGGAGC
AGCAAACCAGCCGCATCAGCCTCCTCCAGGGCACGCCACCCGCATCCCCG
ACATCGACCTCGCCACTACGCGCGTGGCCGGCGTGCGGGGAGTCGTACGG
GCGAAGCGTGGACTGCGGCAGTGCGTGCAGTCGGGACACAGAGGAGGGGC
AGGGGGAGGAGGCCAGCAGTTGGGTGGTGCGGTGGACGACGGACCACTCG
CGGCGCTGGCGACCACCGTGGTTAGCTGCACTTTGCACGGCATTGATGGA
GCAGGCCTTCCTAATAGCCGAATTCAGGTATTTTTCTACGACAAGTGGGC
AGATGAGATCGAGGGATGTCTTGAGAACGGGTACAGCTTGACATTGACCG
GGCCGGGATGTATGGTGCGTGCTGTGCCTGCGGGTGACCATCCATGTGCC
TTGCTTGTGGCCCCGCCCGCGTTATTGTCGGACGTGGCGAGCTTAGGTGC
TCCATCAACGAGGGTGAGGGTGGATTTGAAGCACCCGGAGGGTGCAGAAT
TAAATATGGATTTGGATTTGGACCAGAATACGATGGATGCGCGGGTAGAA
GCTTTCAAGTCGACATGTGCTCGACGCGGTGGAGGGAGGGGTGGGAAGGA
GGAAGGAAGGGTTCAAGGATCAGGAGGGAAAGAAGGAAATAGAGGAGGAA
GAGGGACGATAGGAGGGGGGGTGCTTGTGCCGACGAGAAAGTATGAATAT
AGTAAGTGTGGAGAAATAAGGTTGGAGAGAGATTCCGGGAAGGAGATTAA
CATTTGGGCAATGGTGGGGTCCTTCGGGCAGCCGCGGGCGACGAATGGGA
CGGATTTCTCGCAGAGTTTCTTGTTAGTGGATGAGACGACGACGGACGCG
GATACGGGGTTGGTGTGTAATATCTTCCGACCGGCAGCGGACGTGTTCCC
TAAGGTGAGGGCAGTAGGAGAATTGTTGAGGTGTCATCGCGTCAAAGTGA
AGGAGTATCAGGGTCGCCCTCAATTGGTAGGGCCTGGGCAAGTGCATCGA
TCTCAGTATGTGGTAGCGAGGCGGAAGCCGGGGGCGGGTCCGGTGGGGTC
GGAGGAGGTGTGGGAGGAGGGGAAGTGGGAGCTTGAGGGGACGTCGGAGA
ATTTTACGTTTGACGAGTCGGATAAGCTGGCAATTTTAAGTATATGGCGG
TGGAGAGAAATGACGTGTTTGCCGTCTTGGGGATGGATAAAGCAGGATTT
TAATTTGGGCCCCAAATCCTGTCATCAGATATGGAGGAGGTTGAGGGGGG
AGGAGTGGCAGCCGGCGCTTCTTCCCTCCTTCCTTCCTCCTGGAGGAGAG
ACGGAGCAGCCGTCTGTCTCGACGATGATTGACCAGCCGGGAGATTTTGT
GGCAATGTTAATCAATAAGAATATTCATGAAGGCGCCTTTTGTCTGTGGG
ATGGCACGGGTTGTACTGCTGCTACTGCTGCTGTTGGGGTGGGGGTGTCA
GACGCAGTCGGTTGGAGTGTGAGAAGGGCGGCATTGAAAGCGATTGCGGG
GCCGAAGTGGGGGGAGTTGAGAGAGATGGTAACCAGGGATTTGGTAACGG
ATTCTAGTATAGGAGGAAGAGGAAGAGGAGAAGGAGGAGGGGGAGGAGGA
GGGGGGGGGATAGAAGGAGGAAAGGCAGAATTCTTGCCTCCTGTCATGTA
CTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAGGAGGC
ATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGAGGCTT
GCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGGCTAAC
GATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGGGGAGG
AGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAGAGGGC
CTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGGGAGGA
GCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCCTTGCA
TGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATCGGTCA
GGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCCATGAC
TTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGATTTGA
GGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCACCTTG
AGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAATGAGGT
AGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTGGAACA
TGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGGGGGAA
ATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTCAAGTC
TTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGGGAGGG
GGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACATAA

protein sequence of jgi.p|Nanoce1779_2|641416

>mRNA_7790-protein ID=mRNA_7790-protein|Name=jgi.p|Nanoce1779_2|641416|organism=Nannochloropsis oceanica|type=polypeptide|length=849bp
MQGGEPAAPYTVGAAGAANQPHQPPPGHATRIPDIDLATTRVAGVRGVVR
AKRGLRQCVQSGHRGGAGGGGQQLGGAVDDGPLAALATTVVSCTLHGIDG
AGLPNSRIQVFFYDKWADEIEGCLENGYSLTLTGPGCMVRAVPAGDHPCA
LLVAPPALLSDVASLGAPSTRVRVDLKHPEGAELNMDLDLDQNTMDARVE
AFKSTCARRGGGRGGKEEGRVQGSGGKEGNRGGRGTIGGGVLVPTRKYEY
SKCGEIRLERDSGKEINIWAMVGSFGQPRATNGTDFSQSFLLVDETTTDA
DTGLVCNIFRPAADVFPKVRAVGELLRCHRVKVKEYQGRPQLVGPGQVHR
SQYVVARRKPGAGPVGSEEVWEEGKWELEGTSENFTFDESDKLAILSIWR
WREMTCLPSWGWIKQDFNLGPKSCHQIWRRLRGEEWQPALLPSFLPPGGE
TEQPSVSTMIDQPGDFVAMLINKNIHEGAFCLWDGTGCTAATAAVGVGVS
DAVGWSVRRAALKAIAGPKWGELREMVTRDLVTDSSIGGRGRGEGGGGGG
GGGIEGGKAEFLPPVMYSEDLPSAVGFQEGVRRHGCWIVVRVAEEHKWRL
AQLNLPVGGWVRMKGLTIAPFGMGKGGGRGEGEELWAGLNASVNPMPEEG
LEVHRVAVRLLYRLREEQHRASVAVREGKTAPCMELFVLPPPARRREHRS
GFPRSFIVEALGSSPMTFFAVRARIIGWWPQDLRKFCTHVEGQWIYIFTL
RLQDTSGEMDVVVNNEVGEWFFSKREGTVRAWNMEEEGKEGRAKLKAMGE
ILEEYKRQVSFDFVVKSYLVGSAGEEGGRGGGRGMKRFRLLQPNDYKT*

mRNA from alignment at scaffold_21:337139..339685-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7790 ID=mRNA_7790|Name=jgi.p|Nanoce1779_2|641416|organism=Nannochloropsis oceanica|type=mRNA|length=2547bp|location=Sequence derived from alignment at scaffold_21:337139..339685- (Nannochloropsis oceanica)
ATGCAGGGCGGCGAACCTGCAGCGCCGTACACAGTAGGAGCGGCAGGAGC
AGCAAACCAGCCGCATCAGCCTCCTCCAGGGCACGCCACCCGCATCCCCG
ACATCGACCTCGCCACTACGCGCGTGGCCGGCGTGCGGGGAGTCGTACGG
GCGAAGCGTGGACTGCGGCAGTGCGTGCAGTCGGGACACAGAGGAGGGGC
AGGGGGAGGAGGCCAGCAGTTGGGTGGTGCGGTGGACGACGGACCACTCG
CGGCGCTGGCGACCACCGTGGTTAGCTGCACTTTGCACGGCATTGATGGA
GCAGGCCTTCCTAATAGCCGAATTCAGGTATTTTTCTACGACAAGTGGGC
AGATGAGATCGAGGGATGTCTTGAGAACGGGTACAGCTTGACATTGACCG
GGCCGGGATGTATGGTGCGTGCTGTGCCTGCGGGTGACCATCCATGTGCC
TTGCTTGTGGCCCCGCCCGCGTTATTGTCGGACGTGGCGAGCTTAGGTGC
TCCATCAACGAGGGTGAGGGTGGATTTGAAGCACCCGGAGGGTGCAGAAT
TAAATATGGATTTGGATTTGGACCAGAATACGATGGATGCGCGGGTAGAA
GCTTTCAAGTCGACATGTGCTCGACGCGGTGGAGGGAGGGGTGGGAAGGA
GGAAGGAAGGGTTCAAGGATCAGGAGGGAAAGAAGGAAATAGAGGAGGAA
GAGGGACGATAGGAGGGGGGGTGCTTGTGCCGACGAGAAAGTATGAATAT
AGTAAGTGTGGAGAAATAAGGTTGGAGAGAGATTCCGGGAAGGAGATTAA
CATTTGGGCAATGGTGGGGTCCTTCGGGCAGCCGCGGGCGACGAATGGGA
CGGATTTCTCGCAGAGTTTCTTGTTAGTGGATGAGACGACGACGGACGCG
GATACGGGGTTGGTGTGTAATATCTTCCGACCGGCAGCGGACGTGTTCCC
TAAGGTGAGGGCAGTAGGAGAATTGTTGAGGTGTCATCGCGTCAAAGTGA
AGGAGTATCAGGGTCGCCCTCAATTGGTAGGGCCTGGGCAAGTGCATCGA
TCTCAGTATGTGGTAGCGAGGCGGAAGCCGGGGGCGGGTCCGGTGGGGTC
GGAGGAGGTGTGGGAGGAGGGGAAGTGGGAGCTTGAGGGGACGTCGGAGA
ATTTTACGTTTGACGAGTCGGATAAGCTGGCAATTTTAAGTATATGGCGG
TGGAGAGAAATGACGTGTTTGCCGTCTTGGGGATGGATAAAGCAGGATTT
TAATTTGGGCCCCAAATCCTGTCATCAGATATGGAGGAGGTTGAGGGGGG
AGGAGTGGCAGCCGGCGCTTCTTCCCTCCTTCCTTCCTCCTGGAGGAGAG
ACGGAGCAGCCGTCTGTCTCGACGATGATTGACCAGCCGGGAGATTTTGT
GGCAATGTTAATCAATAAGAATATTCATGAAGGCGCCTTTTGTCTGTGGG
ATGGCACGGGTTGTACTGCTGCTACTGCTGCTGTTGGGGTGGGGGTGTCA
GACGCAGTCGGTTGGAGTGTGAGAAGGGCGGCATTGAAAGCGATTGCGGG
GCCGAAGTGGGGGGAGTTGAGAGAGATGGTAACCAGGGATTTGGTAACGG
ATTCTAGTATAGGAGGAAGAGGAAGAGGAGAAGGAGGAGGGGGAGGAGGA
GGGGGGGGGATAGAAGGAGGAAAGGCAGAATTCTTGCCTCCTGTCATGTA
CTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAGGAGGC
ATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGAGGCTT
GCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGGCTAAC
GATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGGGGAGG
AGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAGAGGGC
CTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGGGAGGA
GCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCCTTGCA
TGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATCGGTCA
GGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCCATGAC
TTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGATTTGA
GGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCACCTTG
AGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAATGAGGT
AGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTGGAACA
TGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGGGGGAA
ATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTCAAGTC
TTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGGGAGGG
GGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACATAA

Coding sequence (CDS) from alignment at scaffold_21:337139..339685-

>mRNA_7790 ID=mRNA_7790|Name=jgi.p|Nanoce1779_2|641416|organism=Nannochloropsis oceanica|type=CDS|length=2547bp|location=Sequence derived from alignment at scaffold_21:337139..339685- (Nannochloropsis oceanica)
ATGCAGGGCGGCGAACCTGCAGCGCCGTACACAGTAGGAGCGGCAGGAGC
AGCAAACCAGCCGCATCAGCCTCCTCCAGGGCACGCCACCCGCATCCCCG
ACATCGACCTCGCCACTACGCGCGTGGCCGGCGTGCGGGGAGTCGTACGG
GCGAAGCGTGGACTGCGGCAGTGCGTGCAGTCGGGACACAGAGGAGGGGC
AGGGGGAGGAGGCCAGCAGTTGGGTGGTGCGGTGGACGACGGACCACTCG
CGGCGCTGGCGACCACCGTGGTTAGCTGCACTTTGCACGGCATTGATGGA
GCAGGCCTTCCTAATAGCCGAATTCAGGTATTTTTCTACGACAAGTGGGC
AGATGAGATCGAGGGATGTCTTGAGAACGGGTACAGCTTGACATTGACCG
GGCCGGGATGTATGGTGCGTGCTGTGCCTGCGGGTGACCATCCATGTGCC
TTGCTTGTGGCCCCGCCCGCGTTATTGTCGGACGTGGCGAGCTTAGGTGC
TCCATCAACGAGGGTGAGGGTGGATTTGAAGCACCCGGAGGGTGCAGAAT
TAAATATGGATTTGGATTTGGACCAGAATACGATGGATGCGCGGGTAGAA
GCTTTCAAGTCGACATGTGCTCGACGCGGTGGAGGGAGGGGTGGGAAGGA
GGAAGGAAGGGTTCAAGGATCAGGAGGGAAAGAAGGAAATAGAGGAGGAA
GAGGGACGATAGGAGGGGGGGTGCTTGTGCCGACGAGAAAGTATGAATAT
AGTAAGTGTGGAGAAATAAGGTTGGAGAGAGATTCCGGGAAGGAGATTAA
CATTTGGGCAATGGTGGGGTCCTTCGGGCAGCCGCGGGCGACGAATGGGA
CGGATTTCTCGCAGAGTTTCTTGTTAGTGGATGAGACGACGACGGACGCG
GATACGGGGTTGGTGTGTAATATCTTCCGACCGGCAGCGGACGTGTTCCC
TAAGGTGAGGGCAGTAGGAGAATTGTTGAGGTGTCATCGCGTCAAAGTGA
AGGAGTATCAGGGTCGCCCTCAATTGGTAGGGCCTGGGCAAGTGCATCGA
TCTCAGTATGTGGTAGCGAGGCGGAAGCCGGGGGCGGGTCCGGTGGGGTC
GGAGGAGGTGTGGGAGGAGGGGAAGTGGGAGCTTGAGGGGACGTCGGAGA
ATTTTACGTTTGACGAGTCGGATAAGCTGGCAATTTTAAGTATATGGCGG
TGGAGAGAAATGACGTGTTTGCCGTCTTGGGGATGGATAAAGCAGGATTT
TAATTTGGGCCCCAAATCCTGTCATCAGATATGGAGGAGGTTGAGGGGGG
AGGAGTGGCAGCCGGCGCTTCTTCCCTCCTTCCTTCCTCCTGGAGGAGAG
ACGGAGCAGCCGTCTGTCTCGACGATGATTGACCAGCCGGGAGATTTTGT
GGCAATGTTAATCAATAAGAATATTCATGAAGGCGCCTTTTGTCTGTGGG
ATGGCACGGGTTGTACTGCTGCTACTGCTGCTGTTGGGGTGGGGGTGTCA
GACGCAGTCGGTTGGAGTGTGAGAAGGGCGGCATTGAAAGCGATTGCGGG
GCCGAAGTGGGGGGAGTTGAGAGAGATGGTAACCAGGGATTTGGTAACGG
ATTCTAGTATAGGAGGAAGAGGAAGAGGAGAAGGAGGAGGGGGAGGAGGA
GGGGGGGGGATAGAAGGAGGAAAGGCAGAATTCTTGCCTCCTGTCATGTA
CTCTGAGGATCTGCCCTCAGCGGTGGGGTTTCAGGAGGGTGTGAGGAGGC
ATGGATGTTGGATAGTGGTGAGGGTGGCTGAGGAGCATAAGTGGAGGCTT
GCACAGTTGAACCTGCCTGTTGGGGGTTGGGTTAGGATGAAAGGGCTAAC
GATTGCCCCTTTTGGGATGGGGAAGGGGGGCGGGAGGGGAGAAGGGGAGG
AGCTATGGGCAGGATTGAATGCAAGTGTGAACCCGATGCCGGAAGAGGGC
CTGGAGGTGCATAGGGTGGCAGTACGGTTGCTGTACCGGCTGCGGGAGGA
GCAGCATAGAGCGTCAGTGGCCGTGAGGGAGGGGAAGACAGCGCCTTGCA
TGGAGTTGTTTGTTCTTCCTCCACCGGCGCGGAGAAGGGAGCATCGGTCA
GGCTTCCCTCGGTCATTCATCGTGGAAGCGCTGGGGTCGAGCCCCATGAC
TTTCTTTGCAGTAAGGGCTAGGATTATCGGATGGTGGCCTCAGGATTTGA
GGAAGTTCTGCACCCACGTTGAAGGGCAGTGGATTTACATTTTCACCTTG
AGACTGCAGGATACGAGTGGGGAAATGGACGTGGTGGTGAATAATGAGGT
AGGGGAGTGGTTTTTTTCGAAAAGGGAGGGGACGGTGCGGGCTTGGAACA
TGGAGGAAGAAGGAAAAGAGGGCAGAGCGAAGCTGAAAGCGATGGGGGAA
ATATTGGAAGAGTACAAGAGACAGGTTAGCTTTGATTTTGTGGTCAAGTC
TTACTTGGTAGGCAGCGCTGGAGAAGAGGGAGGAAGAGGAGGAGGGAGGG
GGATGAAGAGATTTCGGTTGTTGCAGCCGAATGATTATAAGACATAA

Synonyms

Publications