jgi.p|Nanoce1779_2|601320, mRNA_8250 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601320
Unique Name	mRNA_8250
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2235
Alignment location	scaffold_23:189856..192255 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	601406
Track	FilteredModels2
ProteinId	601320

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:189856..192255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601320	gene_8250	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601320	mRNA_8250-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8250	CDS_8250	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:189856..192255+
coding sequence from alignment at scaffold_23:189856..192255+

mRNA sequence

>mRNA_8250 ID=mRNA_8250|Name=jgi.p|Nanoce1779_2|601320|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp
ACAGAGCACAGCCCCAGCTGTCCTTTCGACGACTACAGCCAAAAGCAAGC
ACAGACGTGGTTGCAGCACACGCAAGGTATGTGGCGCGATCACGTGGAAT
TCGTGCGACTGTCCTCCTCGCCCTCCTGCCCCTCCGCTTGCCCTCCACTC
TCTTCCCGACCCAACGTGGTTGCCCGAAGATCCCATACATTCATTTGCCC
TGTATAATACCTGCCCCTGTCTGCTGCTGCTTGTCCTCCTTCAGCCAGGC
AGGTGCTGGCGTCTACCATCATAGCCCCTCCCCACCACCTGCGTTCAAGC
CCTTCCAAGCTTTACCTTCGCCTCTCACACGAATGCGGGTGTGGCATTTT
CCTCTCGCCATATGCTGAAGCCACATGCCTAACCGTATGATGAAGGAGGC
CTTTGTTGGCCGGCGGATAAAAAATAGGGTGCCCATATGTGGCAGTGTCT
ACTTTCGGGGGATGGTGGTTTTAACCCTCTTTTCATCAGATGACAGACAT
TGAAAACGTACAGTCTAGTGGCTCAAAATTTTCCCCTCTATCAAAGCTCA
CCACCCACGGTACATGATCAAAGTGGTAAAAAGTCGATAACATACGCTTG
ACCTAAATTATATCAAACAGGCAATAGTGCATTTAATTTAAGGGGCTTAA
ATATCTTTGCCCCGCTACGTATAGAGTAAAAACGCCGTGGAATGAATAAG
CCTCATAAAAGAGTGCACTACAAAGAGAGGTACATAGAAGGCTGTGTCTC
TAGCAGGCGGCAACGACATGGGGCTAGAATTTGGATGCTTCTGAGCATCG
CAGCCTTTTTGATGCTTTTCCTTGGTCCACCCTTGCTAAACCCATCGTCA
AATCTGTCTGCTTCAACAATGGCTCTGGTACAATCACGTGATCTAAGGAG
ATTTGCCTACGTTTTTTATGCCACTAACGACGGATATGCGTGTAGCGCAC
TTCTAAACATGATGCGGCTTCGGCGCCTTGAGGACGGCCTGCCTTCCAAT
ATCGATCTCATCCTCATTGCTTCCAATGCCGTTTCCCGCGAGATCCGGCA
CACAGCAATCGAGGATGTCGGTGCTAAAGTATTCAACGCCAGTTCTTTTC
ATCCCCAAATGGTCAGACCTTTGGGCAAATATTCACATTTTTATACCGAA
AGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCCAATACCACGTACCGTCG
AATCATCCTCATGGATGCAGATTGCCTCGTCCTTCGGCCTCCCCATCATC
TCTTCGATCTGCCCGACGAAATTCCATTTGCGGCCCCTAAAGCGTATTGG
TACTGGAACAATTCTCACTTCCAAGACACGGCTTTTTGGAATGTGCCGGA
GCTGAGAAAGAGCCGTCAGGATTTCCTAACGAGCTGGTTAATGTCGGTGC
GCCCCGGTGTAGAAACCTTTCTACGATTGAAAGATAAGAATGACGAGATG
GTTGCCAAGGGTATACCTGATGTATATGACATGGACCTCTTTAATATTGC
TCTGGGGGAGGATATCACAGCACTACCGCCAATTTACGGTATGCTGGACA
TGGAATTCTTCGAAAATGACAATGAACACATGGGTGCGACCCTCGACGAA
ATTATTGATGGCAGGAAGGGATGGGTCGTTCATTTCTCTAGTATAATGGG
TAAACCTATGGACAAGTGGATCAATCCTGCCTCTGTCTCACAGCGAGTTC
CTACTGCGCATCCGGGATACCGAGCTTTGTTCCAAATCTGGAATGATGAA
GCTCGCATGCTTTGCCCGTCGGGGTCGTATCCGACTCCTGCATAGGTGGC
GTCAGAGCGTGGCAAAGGTCAAATGTTCTATCACAACCAAGACACTTCTA
CTTCAGTGCATTGGGAGTGTGCTAAACCAAGCGCCTCTGGACACCATTCA
TATGACAGTGCCCGGCAGCCCGGAGGATGTTGTGAAGGTTTATGAGCAAA
CTGAACTCGTCACAAGGTGCCGTCATCATGCTACCCTACATGTCGGCGCC
TAGGGACGGCACGGTCACCCTTTTTGTAGCAGACATCCTCTTACCATGAT
GAGGCGCTCAAAAAAATGGTAAATGTACTTTGTATAAGATTACTCGATGA
CAAGGTAGACGAGTGAGTGCGTGTTAATTGCTATTCACTTTCTGGGTTTG
GTCTGGTCTGAGCTCTGGTTTACACGGGAAATTAAAGAAAGGATGGAAAA
AAAAGGCTTTTTAATGAAATGTATAGACTCCTGCC

protein sequence of jgi.p|Nanoce1779_2|601320

>mRNA_8250-protein ID=mRNA_8250-protein|Name=jgi.p|Nanoce1779_2|601320|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MNKPHKRVHYKERYIEGCVSSRRQRHGARIWMLLSIAAFLMLFLGPPLLN
PSSNLSASTMALVQSRDLRRFAYVFYATNDGYACSALLNMMRLRRLEDGL
PSNIDLILIASNAVSREIRHTAIEDVGAKVFNASSFHPQMVRPLGKYSHF
YTESSNKFLAFLLPNTTYRRIILMDADCLVLRPPHHLFDLPDEIPFAAPK
AYWYWNNSHFQDTAFWNVPELRKSRQDFLTSWLMSVRPGVETFLRLKDKN
DEMVAKGIPDVYDMDLFNIALGEDITALPPIYGMLDMEFFENDNEHMGAT
LDEIIDGRKGWVVHFSSIMGKPMDKWINPASVSQRVPTAHPGYRALFQIW
NDEARMLCPSGSYPTPA*

mRNA from alignment at scaffold_23:189856..192255+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8250 ID=mRNA_8250|Name=jgi.p|Nanoce1779_2|601320|organism=Nannochloropsis oceanica|type=mRNA|length=2400bp|location=Sequence derived from alignment at scaffold_23:189856..192255+ (Nannochloropsis oceanica)
ACAGAGCACAGCCCCAGCTGTCCTTTCGACGACTACAGCCAAAAGCAAGC
ACAGACGTGGTTGCAGCACACGCAAGGTATGTGGCGCGATCACGTGGAAT
TCGTGCGACTGTCCTCCTCGCCCTCCTGCCCCTCCGCTTGCCCTCCACTC
TCTTCCCGACCCAACGTGGTTGCCCGAAGATCCCATACATTCATTTGCCC
TGTATAATACCTGCCCCTGTCTGCTGCTGCTTGTCCTCCTTCAGCCAGGC
AGGTGCTGGCGTCTACCATCATAGCCCCTCCCCACCACCTGCGTTCAAGC
CCTTCCAAGCTTTACCTTCGCCTCTCACACGAATGCGGGTGTGGCATTTT
CCTCTCGCCATATGCTGAAGCCACATGCCTAACCGTATGATGAAGGAGGC
CTTTGTTGGCCGGCGGATAAAAAATAGGGTGCCCATATGTGGCAGTGTCT
ACTTTCGGGGGATGGTGGTTTTAACCCTCTTTTCATCAGATGACAGACAT
TGAAAACGTACAGTCTAGTGGCTCAAAATTTTCCCCTCTATCAAAGCTCA
CCACCCACGGTACATGATCAAAGTGGTAAAAAGTCGATAACATACGCTTG
ACCTAAATTATATCAAACAGGCAATAGTGCATTTAATTTAAGGGGCTTAA
ATATCTTTGCCCCGCTACGTATAGAGTAAAAACGCCGTGGAATGAATAAG
CCTCATAAAAGAGTGCACTACAAAGAGAGGTACATAGAAGGCTGTGTCTC
TAGCAGGCGGCAACGACATGGGGCTAGAATTTGGATGCTTCTGAGCATCG
CAGCCTTTTTGATGCTTTTCCTTGGTCCACCCTTGCTAAACCCATCGTCA
AATCTGTCTGCTTCAACAATGGCTCTGGTACAATCACGTGATCTAAGGAG
ATTTGCCTACGTTTTTTATGCCACTAACGACGGATATGCGTGTAGCGCAC
TTCTAAACATGATGCGGCTTCGGCGCCTTGAGGACGGCCTGCCTTCCAAT
ATCGATCTCATCCTCATTGCTTCCAATGCCGTTTCCCGCGAGATCCGGCA
CACAGCAATCGAGGATGTCGGTGCTAAAGTATTCAACGCCAGTTCTTTTC
ATCCCCAAATGGTCAGACCTTTGGGCAAATATTCACATTTTTATACCGAA
AGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCCAATACCACGTACCGTCG
AATCATCCTCATGGATGCAGATTGCCTCGTCCTTCGGCCTCCCCATCATC
TCTTCGATCTGCCCGACGAAATTCCATTTGCGGCCCCTAAAGCGTATTGG
TACTGGAACAATTCTCACTTCCAAGACACGGCTTTTTGGAATGTGCCGGA
GCTGAGAAAGAGCCGTCAGGATTTCCTAACGAGCTGGTTAATGTCGGTAA
GTGCGGTCATCTCTTGCTCAGATACCACCCAAGCTCAATCCGCTCTCATC
ACAGGTGCGCCCCGGTGTAGAAACCTTTCTACGATTGAAAGATAAGAATG
ACGAGATGGTTGCCAAGGTAGGGTATGGTTGTATGAAGGCACTCCTACTT
ACATTTGAATTGCACGCAGGAGACTACAATTCCCCCTATTTCTAACCGCA
TCTTTACCACTATACTGCCACAAGGGTATACCTGATGTATATGACATGGA
CCTCTTTAATATTGCTCTGGGGGAGGATATCACAGCACTACCGCCAATTT
ACGGTATGCTGGACATGGAATTCTTCGAAAATGACAATGAACACATGGGT
GCGACCCTCGACGAAATTATTGATGGCAGGAAGGGATGGGTCGTTCATTT
CTCTAGTATAATGGGTAAACCTATGGACAAGTGGATCAATCCTGCCTCTG
TCTCACAGCGAGTTCCTACTGCGCATCCGGGATACCGAGCTTTGTTCCAA
ATCTGGAATGATGAAGCTCGCATGCTTTGCCCGTCGGGGTCGTATCCGAC
TCCTGCATAGGTGGCGTCAGAGCGTGGCAAAGGTCAAATGTTCTATCACA
ACCAAGACACTTCTACTTCAGTGCATTGGGAGTGTGCTAAACCAAGCGCC
TCTGGACACCATTCATATGACAGTGCCCGGCAGCCCGGAGGATGTTGTGA
AGGTTTATGAGCAAACTGAACTCGTCACAAGGTGCCGTCATCATGCTACC
CTACATGTCGGCGCCTAGGGACGGCACGGTCACCCTTTTTGTAGCAGACA
TCCTCTTACCATGATGAGGCGCTCAAAAAAATGGTAAATGTACTTTGTAT
AAGATTACTCGATGACAAGGTAGACGAGTGAGTGCGTGTTAATTGCTATT
CACTTTCTGGGTTTGGTCTGGTCTGAGCTCTGGTTTACACGGGAAATTAA
AGAAAGGATGGAAAAAAAAGGCTTTTTAATGAAATGTATAGACTCCTGCC

Coding sequence (CDS) from alignment at scaffold_23:189856..192255+

>mRNA_8250 ID=mRNA_8250|Name=jgi.p|Nanoce1779_2|601320|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_23:189856..192255+ (Nannochloropsis oceanica)
ATGAATAAGCCTCATAAAAGAGTGCACTACAAAGAGAGGTACATAGAAGG
CTGTGTCTCTAGCAGGCGGCAACGACATGGGGCTAGAATTTGGATGCTTC
TGAGCATCGCAGCCTTTTTGATGCTTTTCCTTGGTCCACCCTTGCTAAAC
CCATCGTCAAATCTGTCTGCTTCAACAATGGCTCTGGTACAATCACGTGA
TCTAAGGAGATTTGCCTACGTTTTTTATGCCACTAACGACGGATATGCGT
GTAGCGCACTTCTAAACATGATGCGGCTTCGGCGCCTTGAGGACGGCCTG
CCTTCCAATATCGATCTCATCCTCATTGCTTCCAATGCCGTTTCCCGCGA
GATCCGGCACACAGCAATCGAGGATGTCGGTGCTAAAGTATTCAACGCCA
GTTCTTTTCATCCCCAAATGGTCAGACCTTTGGGCAAATATTCACATTTT
TATACCGAAAGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCCAATACCAC
GTACCGTCGAATCATCCTCATGGATGCAGATTGCCTCGTCCTTCGGCCTC
CCCATCATCTCTTCGATCTGCCCGACGAAATTCCATTTGCGGCCCCTAAA
GCGTATTGGTACTGGAACAATTCTCACTTCCAAGACACGGCTTTTTGGAA
TGTGCCGGAGCTGAGAAAGAGCCGTCAGGATTTCCTAACGAGCTGGTTAA
TGTCGGTGCGCCCCGGTGTAGAAACCTTTCTACGATTGAAAGATAAGAAT
GACGAGATGGTTGCCAAGGGTATACCTGATGTATATGACATGGACCTCTT
TAATATTGCTCTGGGGGAGGATATCACAGCACTACCGCCAATTTACGGTA
TGCTGGACATGGAATTCTTCGAAAATGACAATGAACACATGGGTGCGACC
CTCGACGAAATTATTGATGGCAGGAAGGGATGGGTCGTTCATTTCTCTAG
TATAATGGGTAAACCTATGGACAAGTGGATCAATCCTGCCTCTGTCTCAC
AGCGAGTTCCTACTGCGCATCCGGGATACCGAGCTTTGTTCCAAATCTGG
AATGATGAAGCTCGCATGCTTTGCCCGTCGGGGTCGTATCCGACTCCTGC
ATAGATGAATAAGCCTCATAAAAGAGTGCACTACAAAGAGAGGTACATAG
AAGGCTGTGTCTCTAGCAGGCGGCAACGACATGGGGCTAGAATTTGGATG
CTTCTGAGCATCGCAGCCTTTTTGATGCTTTTCCTTGGTCCACCCTTGCT
AAACCCATCGTCAAATCTGTCTGCTTCAACAATGGCTCTGGTACAATCAC
GTGATCTAAGGAGATTTGCCTACGTTTTTTATGCCACTAACGACGGATAT
GCGTGTAGCGCACTTCTAAACATGATGCGGCTTCGGCGCCTTGAGGACGG
CCTGCCTTCCAATATCGATCTCATCCTCATTGCTTCCAATGCCGTTTCCC
GCGAGATCCGGCACACAGCAATCGAGGATGTCGGTGCTAAAGTATTCAAC
GCCAGTTCTTTTCATCCCCAAATGGTCAGACCTTTGGGCAAATATTCACA
TTTTTATACCGAAAGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCCAATA
CCACGTACCGTCGAATCATCCTCATGGATGCAGATTGCCTCGTCCTTCGG
CCTCCCCATCATCTCTTCGATCTGCCCGACGAAATTCCATTTGCGGCCCC
TAAAGCGTATTGGTACTGGAACAATTCTCACTTCCAAGACACGGCTTTTT
GGAATGTGCCGGAGCTGAGAAAGAGCCGTCAGGATTTCCTAACGAGCTGG
TTAATGTCGGTGCGCCCCGGTGTAGAAACCTTTCTACGATTGAAAGATAA
GAATGACGAGATGGTTGCCAAGGGTATACCTGATGTATATGACATGGACC
TCTTTAATATTGCTCTGGGGGAGGATATCACAGCACTACCGCCAATTTAC
GGTATGCTGGACATGGAATTCTTCGAAAATGACAATGAACACATGGGTGC
GACCCTCGACGAAATTATTGATGGCAGGAAGGGATGGGTCGTTCATTTCT
CTAGTATAATGGGTAAACCTATGGACAAGTGGATCAATCCTGCCTCTGTC
TCACAGCGAGTTCCTACTGCGCATCCGGGATACCGAGCTTTGTTCCAAAT
CTGGAATGATGAAGCTCGCATGCTTTGCCCGTCGGGGTCGTATCCGACTC
CTGCATAGATGAATAAGCCTCATAAAAGAGTGCACTACAAAGAGAGGTAC
ATAGAAGGCTGTGTCTCTAGCAGGCGGCAACGACATGGGGCTAGAATTTG
GATGCTTCTGAGCATCGCAGCCTTTTTGATGCTTTTCCTTGGTCCACCCT
TGCTAAACCCATCGTCAAATCTGTCTGCTTCAACAATGGCTCTGGTACAA
TCACGTGATCTAAGGAGATTTGCCTACGTTTTTTATGCCACTAACGACGG
ATATGCGTGTAGCGCACTTCTAAACATGATGCGGCTTCGGCGCCTTGAGG
ACGGCCTGCCTTCCAATATCGATCTCATCCTCATTGCTTCCAATGCCGTT
TCCCGCGAGATCCGGCACACAGCAATCGAGGATGTCGGTGCTAAAGTATT
CAACGCCAGTTCTTTTCATCCCCAAATGGTCAGACCTTTGGGCAAATATT
CACATTTTTATACCGAAAGCTCAAACAAGTTTCTGGCTTTCCTGCTTCCC
AATACCACGTACCGTCGAATCATCCTCATGGATGCAGATTGCCTCGTCCT
TCGGCCTCCCCATCATCTCTTCGATCTGCCCGACGAAATTCCATTTGCGG
CCCCTAAAGCGTATTGGTACTGGAACAATTCTCACTTCCAAGACACGGCT
TTTTGGAATGTGCCGGAGCTGAGAAAGAGCCGTCAGGATTTCCTAACGAG
CTGGTTAATGTCGGTGCGCCCCGGTGTAGAAACCTTTCTACGATTGAAAG
ATAAGAATGACGAGATGGTTGCCAAGGGTATACCTGATGTATATGACATG
GACCTCTTTAATATTGCTCTGGGGGAGGATATCACAGCACTACCGCCAAT
TTACGGTATGCTGGACATGGAATTCTTCGAAAATGACAATGAACACATGG
GTGCGACCCTCGACGAAATTATTGATGGCAGGAAGGGATGGGTCGTTCAT
TTCTCTAGTATAATGGGTAAACCTATGGACAAGTGGATCAATCCTGCCTC
TGTCTCACAGCGAGTTCCTACTGCGCATCCGGGATACCGAGCTTTGTTCC
AAATCTGGAATGATGAAGCTCGCATGCTTTGCCCGTCGGGGTCGTATCCG
ACTCCTGCATAG

Synonyms

Publications