jgi.p|Nanoce1779_2|601344, mRNA_8256 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601344
Unique NamemRNA_8256
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1192
Alignment locationscaffold_23:208642..210075 -

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Properties
Property NameValue
TranscriptId601430
TrackFilteredModels2
ProteinId601344
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:208642..210075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601344gene_8256Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601344mRNA_8256-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8256CDS_8256Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8256 ID=mRNA_8256|Name=jgi.p|Nanoce1779_2|601344|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp
ACAGACAGGACACGCAGGTCCAGCAGATCATCCTCAACGTTGTCGGTCGT
CGTCACGCGCCCCCTTTTCGTTTCCTCTCTGTCTGCGAGTCCCAGCAACG
ATAGAACAAGCACAAGTCAAGGGACATCTCCGCCCATTTCCATCCTTGAC
ACACAACAACCTTAGCGGCCAGAGTGATCGGTAACAAGCATGGGCTTCTT
TACGGACGCAATAGAAGACATTGTACAGGAGCCGTGGCTCATCCCAAGCC
ACCCCCGCAGGGAGGACTTCCTCTACTTCCGAGGGAGCAGCAAAAAGTCG
ATTTCTACGTATCGCTGCGTGATTGCCTCGTACTGGACGTTTTGGGTCTT
ACTTAGCATTTTGGGATCAGTGGGCGTCCCCATTCCTGCTCCCCTCTTCG
GTGTGATGGATAACGATATGGACATCAAATGGCTCATCTTCCTTACCAAC
TGGTCTATGCTCCTCCTCGGCACTTACCTCTGGACCGCCTATGCCGCTTC
TCGCTCCCTCCCGCCCTCCATCCCTCCCACCCCTCCCTCCTCACCCTCCC
ACCATCGTCGCCGGCTTTACCAGACTGTGTGGGTGTTGCGGAATTGTACG
GCTGTTGCGGCCCTTGTGGTGTCTCTTCTGTTCTGGACGATATTGTTTCC
CGAGATAAAGAAAACGAGCTGGGTGGACGTGCATTGTCACGCCATAAATA
GCGTGATTGTTCTCCTGGATTTGACCGTGACTCATGTGCCGTACTATTTT
AAGCATGGGTGGATGGGTCTCACGTACCTTGTCACCTACCTCTTATTTTC
CATCGTGTACTGGCTTAGCGGGGGGACTGATCCCGAGGGCGATCATTACA
TCTATCCACCTTTGAATTACAAGCACCCGGGTGAGGCCGCCGGCCTGGTG
GTGGTAGTGGTGGTGGTGGTTGTCCCTGCCGTTCACACCATGTTGTACGT
TTACAACCGTTGGTTGCGTCGAACCGAATACTGGCATGGCCCACAAGTAG
GGAGTAGAATCACAGTGCGGGACCGCATGCCACTCCTGCCGAACTAAAAA
TAATGATCAAATGGTATAATGATGTAAATGCGTGTGGAGGTACCTAGGCA
TTGAAGAAGTCAACGGAAAGATTTGTCACATAGTTGATGAAATAAATGTC
TCACAATGTGGTCGGGAGGGTTCAAGGCCAACCAAAGTCTGC
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protein sequence of jgi.p|Nanoce1779_2|601344

>mRNA_8256-protein ID=mRNA_8256-protein|Name=jgi.p|Nanoce1779_2|601344|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MGFFTDAIEDIVQEPWLIPSHPRREDFLYFRGSSKKSISTYRCVIASYWT
FWVLLSILGSVGVPIPAPLFGVMDNDMDIKWLIFLTNWSMLLLGTYLWTA
YAASRSLPPSIPPTPPSSPSHHRRRLYQTVWVLRNCTAVAALVVSLLFWT
ILFPEIKKTSWVDVHCHAINSVIVLLDLTVTHVPYYFKHGWMGLTYLVTY
LLFSIVYWLSGGTDPEGDHYIYPPLNYKHPGEAAGLVVVVVVVVVPAVHT
MLYVYNRWLRRTEYWHGPQVGSRITVRDRMPLLPN*
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mRNA from alignment at scaffold_23:208642..210075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8256 ID=mRNA_8256|Name=jgi.p|Nanoce1779_2|601344|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_23:208642..210075- (Nannochloropsis oceanica)
ACAGACAGGACACGCAGGTCCAGCAGATCATCCTCAACGTTGTCGGTCGT
CGTCACGCGCCCCCTTTTCGTTTCCTCTCTGTCTGCGAGTCCCAGCAACG
ATAGAACAAGCACAAGTCAAGGGACATCTCCGCCCATTTCCATCCTTGAC
ACACAACAACCTTAGCGGCCAGAGTGATCGGTAACAAGCATGGGCTTCTT
TACGGACGCAATAGAAGACATTGTACAGGAGCCGTGGCTCATCCCAAGCC
ACCCCCGCAGGGAGGACTTCCTCTACTTCCGAGGGAGCAGCAAAAAGTCG
ATTTCTACGTATCGCTGCGTGATTGCCTCGTACTGGACGTTTTGGGTCTT
ACTTAGCATTTTGGGATCAGGTATGTCTTGATGGAGAGATTGTGTGTATG
GGTATGGAGCTTGGGTGGCCAAGGTACGACTGAAGAGGCAGTACCTGCGT
GTGCATGACGGCAGGACTGACATGTAAGGCCTTCGCTTTGTCTGTCTCAG
CTGCTTTGAACATGATGGACAACCTTTATACATAAACTTTCCACGTCGGA
TCTTTTTGGCCCACTGATGCAAGCTCTCTCCCTTCCTTCCTCACACCCTC
CATCCCTTCCAGTGGGCGTCCCCATTCCTGCTCCCCTCTTCGGTGTGATG
GATAACGATATGGACATCAAATGGCTCATCTTCCTTACCAACTGGTCTAT
GCTCCTCCTCGGCACTTACCTCTGGACCGCCTATGCCGCTTCTCGCTCCC
TCCCGCCCTCCATCCCTCCCACCCCTCCCTCCTCACCCTCCCACCATCGT
CGCCGGCTTTACCAGACTGTGTGGGTGTTGCGGAATTGTACGGCTGTTGC
GGCCCTTGTGGTGTCTCTTCTGTTCTGGACGATATTGTTTCCCGAGATAA
AGAAAACGAGCTGGGTGGACGTGCATTGTCACGCCATAAATAGCGTGATT
GTTCTCCTGGATTTGACCGTGACTCATGTGCCGTACTATTTTAAGCATGG
GTGGATGGGTCTCACGTACCTTGTCACCTACCTCTTATTTTCCATCGTGT
ACTGGCTTAGCGGGGGGACTGATCCCGAGGGCGATCATTACATCTATCCA
CCTTTGAATTACAAGCACCCGGGTGAGGCCGCCGGCCTGGTGGTGGTAGT
GGTGGTGGTGGTTGTCCCTGCCGTTCACACCATGTTGTACGTTTACAACC
GTTGGTTGCGTCGAACCGAATACTGGCATGGCCCACAAGTAGGGAGTAGA
ATCACAGTGCGGGACCGCATGCCACTCCTGCCGAACTAAAAATAATGATC
AAATGGTATAATGATGTAAATGCGTGTGGAGGTACCTAGGCATTGAAGAA
GTCAACGGAAAGATTTGTCACATAGTTGATGAAATAAATGTCTCACAATG
TGGTCGGGAGGGTTCAAGGCCAACCAAAGTCTGC
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Coding sequence (CDS) from alignment at scaffold_23:208642..210075-

>mRNA_8256 ID=mRNA_8256|Name=jgi.p|Nanoce1779_2|601344|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_23:208642..210075- (Nannochloropsis oceanica)
TGGGCGTCCCCATTCCTGCTCCCCTCTTCGGTGTGATGGATAACGATATG
GACATCAAATGGCTCATCTTCCTTACCAACTGGTCTATGCTCCTCCTCGG
CACTTACCTCTGGACCGCCTATGCCGCTTCTCGCTCCCTCCCGCCCTCCA
TCCCTCCCACCCCTCCCTCCTCACCCTCCCACCATCGTCGCCGGCTTTAC
CAGACTGTGTGGGTGTTGCGGAATTGTACGGCTGTTGCGGCCCTTGTGGT
GTCTCTTCTGTTCTGGACGATATTGTTTCCCGAGATAAAGAAAACGAGCT
GGGTGGACGTGCATTGTCACGCCATAAATAGCGTGATTGTTCTCCTGGAT
TTGACCGTGACTCATGTGCCGTACTATTTTAAGCATGGGTGGATGGGTCT
CACGTACCTTGTCACCTACCTCTTATTTTCCATCGTGTACTGGCTTAGCG
GGGGGACTGATCCCGAGGGCGATCATTACATCTATCCACCTTTGAATTAC
AAGCACCCGGGTGAGGCCGCCGGCCTGGTGGTGGTAGTGGTGGTGGTGGT
TGTCCCTGCCGTTCACACCATGTTGTACGTTTACAACCGTTGGTTGCGTC
GAACCGAATACTGGCATGGCCCACAAGTAGGGAGTAGAATCACAGTGCGG
GACCGCATGCCACTCCTGCCGAACTAAATGGGCTTCTTTACGGACGCAAT
AGAAGACATTGTACAGGAGCCGTGGCTCATCCCAAGCCACCCCCGCAGGG
AGGACTTCCTCTACTTCCGAGGGAGCAGCAAAAAGTCGATTTCTACGTAT
CGCTGCGTGATTGCCTCGTACTGGACGTTTTGGGTCTTACTTAGCATTTT
GGGATCAGTGGGCGTCCCCATTCCTGCTCCCCTCTTCGGTGTGATGGATA
ACGATATGGACATCAAATGGCTCATCTTCCTTACCAACTGGTCTATGCTC
CTCCTCGGCACTTACCTCTGGACCGCCTATGCCGCTTCTCGCTCCCTCCC
GCCCTCCATCCCTCCCACCCCTCCCTCCTCACCCTCCCACCATCGTCGCC
GGCTTTACCAGACTGTGTGGGTGTTGCGGAATTGTACGGCTGTTGCGGCC
CTTGTGGTGTCTCTTCTGTTCTGGACGATATTGTTTCCCGAGATAAAGAA
AACGAGCTGGGTGGACGTGCATTGTCACGCCATAAATAGCGTGATTGTTC
TCCTGGATTTGACCGTGACTCATGTGCCGTACTATTTTAAGCATGGGTGG
ATGGGTCTCACGTACCTTGTCACCTACCTCTTATTTTCCATCGTGTACTG
GCTTAGCGGGGGGACTGATCCCGAGGGCGATCATTACATCTATCCACCTT
TGAATTACAAGCACCCGGGTGAGGCCGCCGGCCTGGTGGTGGTAGTGGTG
GTGGTGGTTGTCCCTGCCGTTCACACCATGTTGTACGTTTACAACCGTTG
GTTGCGTCGAACCGAATACTGGCATGGCCCACAAGTAGGGAGTAGAATCA
CAGTGCGGGACCGCATGCCACTCCTGCCGAACTAAATGGGCTTCTTTACG
GACGCAATAGAAGACATTGTACAGGAGCCGTGGCTCATCCCAAGCCACCC
CCGCAGGGAGGACTTCCTCTACTTCCGAGGGAGCAGCAAAAAGTCGATTT
CTACGTATCGCTGCGTGATTGCCTCGTACTGGACGTTTTGGGTCTTACTT
AGCATTTTGGGATCAG
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Synonyms
Publications