|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 632854 |
| Track | FilteredModels2 |
| ProteinId | 632768 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_23 | supercontig | scaffold_23:388060..390111 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8333 ID=mRNA_8333|Name=jgi.p|Nanoce1779_2|632768|organism=Nannochloropsis oceanica|type=mRNA|length=785bp
ATGTCACAACGCTTCTCTATAACACTCCTCCTGCTCGCTGTAGTCGTTCA
GATCATGGTACAAGCCAGGGATCGCCGCGTTAATTCGCTATTTAACAAAA
TCCGTCAACAAGACTACGCCCAAGCAAGTGAAGCCGCCGCAGCCTCGGGC
AAGTTCAACTTTGAACATCGTCGTATGAACACGGAGGAGGAAGCCACAGC
GGAGGCCACCAAGGCAGAGACTGACTTAGACGCGGACATGAATATCCTCA
AGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCACTCCCCGGC
ATGCTCGACACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTT
TAAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTA
ATGCCGATGACGAGGAGGCAGTCTCCGCCGCTATGATCAAGTCGGTGCAA
GAGATGGGAAAAGTGATGATTGCCGCACGCCCCATCACTAAGGACGCGGA
CTCAGTCACGGCTTTCACTGATGAATTCGACAGCGAGTGGATTGAACGGG
CCCGTTCGAAATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGACGAT
GAGGACGTCCTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACAAGGC
CAGCGAGATGGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTCCCTCATGG
GCACCCCCGTGGAATTTAACGGCAATAAGCACGAGGTGATGACAGGTGGA
ATGTGAAGAAGAAATAGGATGAGGGAGAAATGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|632768 >mRNA_8333-protein ID=mRNA_8333-protein|Name=jgi.p|Nanoce1779_2|632768|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MSQRFSITLLLLAVVVQIMVQARDRRVNSLFNKIRQQDYAQASEAAAASG
KFNFEHRRMNTEEEATAEATKAETDLDADMNILKMVKAGTFDFFKDALPG
MLDTVTKEEAGLIFENFKFMKTTEAWKAFEATGNADDEEAVSAAMIKSVQ
EMGKVMIAARPITKDADSVTAFTDEFDSEWIERARSKFFANEDLLRLIDD
EDVLDVLRNPELKLHKASEMGSADPSRLLSSLMGTPVEFNGNKHEVMTGG
M* back to topmRNA from alignment at scaffold_23:388060..390111- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8333 ID=mRNA_8333|Name=jgi.p|Nanoce1779_2|632768|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at scaffold_23:388060..390111- (Nannochloropsis oceanica)
ATGTCACAACGCTTCTCTATAACACTCCTCCTGCTCGCTGTAGTCGTTCA
GATCATGGTACAAGCCAGGGATCGCCGCGTTAATTCGCTATTTAACAAAA
TCCGTCAACAAGACTACGCCCAAGCAAGTGAAGCCGCCGCAGCCTCGGGC
AAGTTCAACTTTGAACATCGTCGTATGAACACGGAGGAGGAAGCCACAGC
GGAGGCCACCAAGGCAGAGACTGACTTAGACGCGGACATGAATATCCTCA
AGTGAGTCAGGTGGCAGGGAGAGGAGCGAAGAAGGGAGAGAAGGGAGAGA
AGAAGCAGGAAGATAATTTTGAGAGTTGCCTAGGAAATACCTTTGCAAGA
ATGAGAGAGTGGCCTGTTCGAGGAAGAAAGTGTCCTCGAAGCTTTACGGT
ATCTCACGCTCTCGCATCCATCTGTACGACCAACAGGATGGTCAAGGCCG
GCACCTTCGACTTCTTCAAGGACGCACTCCCCGGCATGCTCGAGTAAGCT
CCCGTCTAACAAGAGGGACGAGGACGAACAGGAGGAATGGGAAGGAGGAG
AGCCTGTATGTAGTTGGTGCCGTGTGCATCGTATTCCTCCATTCAAAGTT
CGACCATTTTATCCTTGCCGTGGCACCTCGTGATAAGAGACCCACATCTT
CTGTCCACCCTCCCTCCCTCTTTCCCTTCAGCACCGTCACCAAAGAGGAA
GCTGGACTTATCTTCGAGAACTTTAAGTTCATGAAGACGACCGAGGCATG
GAAGGCCTTCGAGGCCACCGGTAATGCCGATGACGAGGAGGCAGTACGTT
TACCTGACTCGCTATTTCTCTCTCTGTGTCATATGTGCATGCCTTCCTTC
CCTCCCTCCCTTCCTCCCTTCCTCCTTTCCTCCCTTCCTTTCTTCCTCGG
TTGCGTTCTTGTCTTCATGTGTAAGGATTTGCTGACGTGGACAATACCTG
CAGTGTCAAGGACCATAAAAAAACTCGGGAAGCTGATTTCCTTCCCTGCC
GCCTTCTCTTCCACTGGTCCTCCCTCTAGGTCTCCGCCGCTATGATCAAG
TCGGTGCAAGAGATGGGAAAAGTGATGATTGCCGCACGCCCCATCACTAA
GGACGCGGACTCAGTCACGGCTTTCACTGATGAATTCGTCCAGAATGTAG
GGAGAAAGGGAGAAGAGGGAGGAGAGGGGACAAAGGCGTTCTTGATGGAA
ATGGAAGGAGACCCGCTGTCGGGCACGTCTCGTTCAGGCCTTCTCAAGCC
CTCCCTCCCTCCCTCCCTCTCCTTTTCTCGCAGCTGAAAGATAATGACCC
CTCTACTGCCGGCCTGTTCGACGCCGTCAAGGGCGGGGACCGCATGGCGG
TCAACACACTGCAACAAAAGTTTGCAGACAAGTATATGGGAGGAATTGAC
TTGGATACGTTCGCGGTAGGTGAGGAGGAAGGGAGGCATTCTTCTCTCAG
TGCCAATGCCGCGGCGTCCCCCTTCATGGCACGGTACCCTCACACCCGTT
CCATACCCTCAAACCCCTTCCTACCTCCAGGACAGCGAGTGGATTGAACG
GGCCCGTTCGAAATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGACG
ATGAGGACGTCCTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACAAG
GTACGACCGCCCCCACCCCCTCCTTTCCTCTTTCTCTCCCTTCCCTCCTT
CCTACCTCCCTCTTTCTCTCTCTGCTCTCGTTCCCCCTTCCATCAAATTG
TCAACATGGACAGAAACGTAAGGATGGCCGCCCTCTTTCCCTCTTTCCCT
CCCTCCCTCCCGCATTTACTCTCTTCCTCTCTCTTCCTTTTGTGCCCCTG
AGGATTAAGGCCGTCTTCTTACGCCTCCCTTCCATCCCTCACTTGCTTCC
TCTTCCCCCTTCCAGGCCAGCGAGATGGGCAGCGCCGACCCCTCTCGTCT
GCTGTCCTCCCTCATGGGCACCCCCGTGGAATTTAACGGCAATAAGCACG
AGGTGATGACAGGTGGAATGTGAAGAAGAAATAGGATGAGGGAGAAATGG
AG back to topCoding sequence (CDS) from alignment at scaffold_23:388060..390111- >mRNA_8333 ID=mRNA_8333|Name=jgi.p|Nanoce1779_2|632768|organism=Nannochloropsis oceanica|type=CDS|length=4536bp|location=Sequence derived from alignment at scaffold_23:388060..390111- (Nannochloropsis oceanica)
GCCAGCGAGATGGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTCCCTCAT
GGGCACCCCCGTGGAATTTAACGGCAATAAGCACGAGGTGATGACAGGTG
GAATGTGAGACAGCGAGTGGATTGAACGGGCCCGTTCGAAATTCTTCGCC
AACGAGGACCTTCTCCGGCTCATCGACGATGAGGACGTCCTGGATGTACT
CAGAAATCCCGAGCTCAAGCTCCACAAGGTCTCCGCCGCTATGATCAAGT
CGGTGCAAGAGATGGGAAAAGTGATGATTGCCGCACGCCCCATCACTAAG
GACGCGGACTCAGTCACGGCTTTCACTGATGAATTCCACCGTCACCAAAG
AGGAAGCTGGACTTATCTTCGAGAACTTTAAGTTCATGAAGACGACCGAG
GCATGGAAGGCCTTCGAGGCCACCGGTAATGCCGATGACGAGGAGGCAGA
TGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCACTCCCCGGCATG
CTCGAATGTCACAACGCTTCTCTATAACACTCCTCCTGCTCGCTGTAGTC
GTTCAGATCATGGTACAAGCCAGGGATCGCCGCGTTAATTCGCTATTTAA
CAAAATCCGTCAACAAGACTACGCCCAAGCAAGTGAAGCCGCCGCAGCCT
CGGGCAAGTTCAACTTTGAACATCGTCGTATGAACACGGAGGAGGAAGCC
ACAGCGGAGGCCACCAAGGCAGAGACTGACTTAGACGCGGACATGAATAT
CCTCAAGCCAGCGAGATGGGCAGCGCCGACCCCTCTCGTCTGCTGTCCTC
CCTCATGGGCACCCCCGTGGAATTTAACGGCAATAAGCACGAGGTGATGA
CAGGTGGAATGTGAGACAGCGAGTGGATTGAACGGGCCCGTTCGAAATTC
TTCGCCAACGAGGACCTTCTCCGGCTCATCGACGATGAGGACGTCCTGGA
TGTACTCAGAAATCCCGAGCTCAAGCTCCACAAGGTCTCCGCCGCTATGA
TCAAGTCGGTGCAAGAGATGGGAAAAGTGATGATTGCCGCACGCCCCATC
ACTAAGGACGCGGACTCAGTCACGGCTTTCACTGATGAATTCCACCGTCA
CCAAAGAGGAAGCTGGACTTATCTTCGAGAACTTTAAGTTCATGAAGACG
ACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTAATGCCGATGACGAGGA
GGCAGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCACTCCCC
GGCATGCTCGAATGTCACAACGCTTCTCTATAACACTCCTCCTGCTCGCT
GTAGTCGTTCAGATCATGGTACAAGCCAGGGATCGCCGCGTTAATTCGCT
ATTTAACAAAATCCGTCAACAAGACTACGCCCAAGCAAGTGAAGCCGCCG
CAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGTATGAACACGGAGGAG
GAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGACTTAGACGCGGACAT
GAATATCCTCAAGCCAGCGAGATGGGCAGCGCCGACCCCTCTCGTCTGCT
GTCCTCCCTCATGGGCACCCCCGTGGAATTTAACGGCAATAAGCACGAGG
TGATGACAGGTGGAATGTGAGACAGCGAGTGGATTGAACGGGCCCGTTCG
AAATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGACGATGAGGACGT
CCTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACAAGGTCTCCGCCG
CTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTGATGATTGCCGCACGC
CCCATCACTAAGGACGCGGACTCAGTCACGGCTTTCACTGATGAATTCCA
CCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTTTAAGTTCATG
AAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTAATGCCGATGA
CGAGGAGGCAGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAGGACGCA
CTCCCCGGCATGCTCGAATGTCACAACGCTTCTCTATAACACTCCTCCTG
CTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGATCGCCGCGTTAA
TTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCCAAGCAAGTGAAG
CCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGTATGAACACG
GAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGACTTAGACGC
GGACATGAATATCCTCAAGCCAGCGAGATGGGCAGCGCCGACCCCTCTCG
TCTGCTGTCCTCCCTCATGGGCACCCCCGTGGAATTTAACGGCAATAAGC
ACGAGGTGATGACAGGTGGAATGTGAGACAGCGAGTGGATTGAACGGGCC
CGTTCGAAATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGACGATGA
GGACGTCCTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACAAGGTCT
CCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTGATGATTGCC
GCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGCTTTCACTGATGA
ATTCCACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAACTTTAAG
TTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGGTAATGC
CGATGACGAGGAGGCAGATGGTCAAGGCCGGCACCTTCGACTTCTTCAAG
GACGCACTCCCCGGCATGCTCGAATGTCACAACGCTTCTCTATAACACTC
CTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGATCGCCG
CGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCCAAGCAA
GTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGTCGTATG
AACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGACTGACTT
AGACGCGGACATGAATATCCTCAAGCCAGCGAGATGGGCAGCGCCGACCC
CTCTCGTCTGCTGTCCTCCCTCATGGGCACCCCCGTGGAATTTAACGGCA
ATAAGCACGAGGTGATGACAGGTGGAATGTGAGACAGCGAGTGGATTGAA
CGGGCCCGTTCGAAATTCTTCGCCAACGAGGACCTTCTCCGGCTCATCGA
CGATGAGGACGTCCTGGATGTACTCAGAAATCCCGAGCTCAAGCTCCACA
AGGTCTCCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAAGTGATG
ATTGCCGCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGCTTTCAC
TGATGAATTCCACCGTCACCAAAGAGGAAGCTGGACTTATCTTCGAGAAC
TTTAAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGCCACCGG
TAATGCCGATGACGAGGAGGCAGATGGTCAAGGCCGGCACCTTCGACTTC
TTCAAGGACGCACTCCCCGGCATGCTCGAATGTCACAACGCTTCTCTATA
ACACTCCTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGCCAGGGA
TCGCCGCGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACTACGCCC
AAGCAAGTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAACATCGT
CGTATGAACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGCAGAGAC
TGACTTAGACGCGGACATGAATATCCTCAAGCCAGCGAGATGGGCAGCGC
CGACCCCTCTCGTCTGCTGTCCTCCCTCATGGGCACCCCCGTGGAATTTA
ACGGCAATAAGCACGAGGTGATGACAGGTGGAATGTGAGACAGCGAGTGG
ATTGAACGGGCCCGTTCGAAATTCTTCGCCAACGAGGACCTTCTCCGGCT
CATCGACGATGAGGACGTCCTGGATGTACTCAGAAATCCCGAGCTCAAGC
TCCACAAGGTCTCCGCCGCTATGATCAAGTCGGTGCAAGAGATGGGAAAA
GTGATGATTGCCGCACGCCCCATCACTAAGGACGCGGACTCAGTCACGGC
TTTCACTGATGAATTCCACCGTCACCAAAGAGGAAGCTGGACTTATCTTC
GAGAACTTTAAGTTCATGAAGACGACCGAGGCATGGAAGGCCTTCGAGGC
CACCGGTAATGCCGATGACGAGGAGGCAGATGGTCAAGGCCGGCACCTTC
GACTTCTTCAAGGACGCACTCCCCGGCATGCTCGAATGTCACAACGCTTC
TCTATAACACTCCTCCTGCTCGCTGTAGTCGTTCAGATCATGGTACAAGC
CAGGGATCGCCGCGTTAATTCGCTATTTAACAAAATCCGTCAACAAGACT
ACGCCCAAGCAAGTGAAGCCGCCGCAGCCTCGGGCAAGTTCAACTTTGAA
CATCGTCGTATGAACACGGAGGAGGAAGCCACAGCGGAGGCCACCAAGGC
AGAGACTGACTTAGACGCGGACATGAATATCCTCAA back to top
|