jgi.p|Nanoce1779_2|200246, mRNA_8032 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|200246
Unique NamemRNA_8032
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length824
Alignment locationscaffold_25:312..1560 -

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Properties
Property NameValue
TranscriptId200332
TrackFilteredModels2
ProteinId200246
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:312..1560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200246gene_8032Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|200246mRNA_8032-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8032CDS_8032Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8032 ID=mRNA_8032|Name=jgi.p|Nanoce1779_2|200246|organism=Nannochloropsis oceanica|type=mRNA|length=824bp
CACCCTGAGAACGACAGAAGAATGCATCTTGTCTGTTTGATCACTTAACG
AACCAAGAGTCTGACCCGTCTCTGATATCCTCGTCCCCTCATAGGAAACG
AAGCCACTCCCCCCGCTCCGTTCCTATAAGACACCAGCAGCGCCACCTCT
CACCATTTCTACCTTCTCAAGCAAACAAACAAACAAACAAACGGGAAGAT
GGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGGATTTCGATCCCA
ACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAGATCGAGACGCGG
ATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGGCGAGTTTATGTA
CCGAGGGAAGAAGTTCAATATGCGCAAAGAAGACGTGCAAGGCGATACGT
ACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCTCC
CGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATGGA
GGTGGGTGCGAAACGCCTCTTCGAAGTGTGGAAAGAGCAAGAAAAGGCCG
AGAAGGAGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAGCAAGACGCAATG
AAGGCGCTCGAGCAACAGGACGATTGACTCAAAATTAGAGATGGACATAC
TGGATTGCATTGGAAGAGAACCAAGCCTGGGGGAATAAGCGGGACCCTCA
TCCGGGGGGATCATCTGGTAGGGCTCTTTAACCAGCATGTAGAAGGGGAG
GAGGGAGGAGGGGGGTAGAGAAGGAGGAGGAAGAGGAGGCCCGCAAGGCG
TTTGCGAGGGCCCGGAGGGAGGTG
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protein sequence of jgi.p|Nanoce1779_2|200246

>mRNA_8032-protein ID=mRNA_8032-protein|Name=jgi.p|Nanoce1779_2|200246|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MGERKVLNKYFPPDFDPNLVPRTKFNQFKQIETRMMLPFNIQCETCGEFM
YRGKKFNMRKEDVQGDTYKGIKKFRFYMKCLTCSREITFITDPEKMDYAM
EVGAKRLFEVWKEQEKAEKEGEEKRAVEEQQDAMKALEQQDD*
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mRNA from alignment at scaffold_25:312..1560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8032 ID=mRNA_8032|Name=jgi.p|Nanoce1779_2|200246|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp|location=Sequence derived from alignment at scaffold_25:312..1560- (Nannochloropsis oceanica)
CACCCTGAGAACGACAGAAGAATGCATCTTGTCTGTTTGATCACTTAACG
AACCAAGAGTCTGACCCGTCTCTGATATCCTCGTCCCCTCATAGGAAACG
AAGCCACTCCCCCCGCTCCGTTCCTATAAGACACCAGCAGCGCCACCTCT
CACCATTTCTACCTTCTCAAGCAAACAAACAAACAAACAAACGGGAAGAT
GGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGGATTTCGATCCCA
ACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAGATCGAGACGCGG
ATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGGCGAGTTTATGTA
CCGAGGGAAGAAGTTCAATATGCGGTAGGTGTGGAGGGAGGGAGGATAGG
AGGGAGGGGGGGGAAAGAGGGAAGGAGGGGGATGCGTTTTTGGGTTACCC
CTTCGCCGCCAACAGTGAGGCGCTTTACCGACTTGACCACCACCTTCTTT
TCTCACTCCCTCTGTCTTCCCCCTCTCCCTCTCTCTCTTCTTTCGTCGCT
CGGGTGTTTCGCGTACCCATCCTCACTCTCACACACGGCGCACAATCACA
CCCGTACGTCCCTCTCCAGCAAAGAAGACGTGCAAGGCGATACGTACAAG
GGCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCTCCCGGGA
AATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATGGAGGTAA
GGCTGCTGCATGTCTTTCCTCCTCCCTCCCTCCCGCCCTCACTCACTCCC
TGCTTCCCTCCCTTTTTCGTGGATATGAGACTGAAAAGGTAGCAAGATGT
AATAGAAGCATCAGATCGTCGAGTGATTGAACCCCTCCCTCCCTCCCTCC
CTTCTCTCCTCCCCTTCTCACCCTAGGTGGGTGCGAAACGCCTCTTCGAA
GTGTGGAAAGAGCAAGAAAAGGCCGAGAAGGAGGGGGAGGAGAAGCGGGC
CGTCGAGGAGCAGCAAGACGCAATGAAGGCGCTCGAGCAACAGGACGATT
GACTCAAAATTAGAGATGGACATACTGGATTGCATTGGAAGAGAACCAAG
CCTGGGGGAATAAGCGGGACCCTCATCCGGGGGGATCATCTGGTAGGGCT
CTTTAACCAGCATGTAGAAGGGGAGGAGGGAGGAGGGGGGTAGAGAAGGA
GGAGGAAGAGGAGGCCCGCAAGGCGTTTGCGAGGGCCCGGAGGGAGGTG
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Coding sequence (CDS) from alignment at scaffold_25:312..1560-

>mRNA_8032 ID=mRNA_8032|Name=jgi.p|Nanoce1779_2|200246|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_25:312..1560- (Nannochloropsis oceanica)
GTGGGTGCGAAACGCCTCTTCGAAGTGTGGAAAGAGCAAGAAAAGGCCGA
GAAGGAGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAGCAAGACGCAATGA
AGGCGCTCGAGCAACAGGACGATTGACAAAGAAGACGTGCAAGGCGATAC
GTACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGTCTCACTTGCT
CCCGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGACTACGCTATG
GAGATGGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCGGATTTCGA
TCCCAACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCAGATCGAGA
CGCGGATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCGGCGAGTTT
ATGTACCGAGGGAAGAAGTTCAATATGCGGTGGGTGCGAAACGCCTCTTC
GAAGTGTGGAAAGAGCAAGAAAAGGCCGAGAAGGAGGGGGAGGAGAAGCG
GGCCGTCGAGGAGCAGCAAGACGCAATGAAGGCGCTCGAGCAACAGGACG
ATTGACAAAGAAGACGTGCAAGGCGATACGTACAAGGGCATCAAGAAATT
TCGCTTCTATATGAAGTGTCTCACTTGCTCCCGGGAAATCACCTTTATCA
CCGACCCGGAAAAGATGGACTACGCTATGGAGATGGGCGAGCGCAAGGTC
CTCAACAAGTACTTCCCCCCGGATTTCGATCCCAACCTGGTGCCACGGAC
GAAATTCAATCAATTTAAGCAGATCGAGACGCGGATGATGCTGCCGTTTA
ACATCCAATGTGAAACGTGCGGCGAGTTTATGTACCGAGGGAAGAAGTTC
AATATGCGGTGGGTGCGAAACGCCTCTTCGAAGTGTGGAAAGAGCAAGAA
AAGGCCGAGAAGGAGGGGGAGGAGAAGCGGGCCGTCGAGGAGCAGCAAGA
CGCAATGAAGGCGCTCGAGCAACAGGACGATTGACAAAGAAGACGTGCAA
GGCGATACGTACAAGGGCATCAAGAAATTTCGCTTCTATATGAAGTGTCT
CACTTGCTCCCGGGAAATCACCTTTATCACCGACCCGGAAAAGATGGACT
ACGCTATGGAGATGGGCGAGCGCAAGGTCCTCAACAAGTACTTCCCCCCG
GATTTCGATCCCAACCTGGTGCCACGGACGAAATTCAATCAATTTAAGCA
GATCGAGACGCGGATGATGCTGCCGTTTAACATCCAATGTGAAACGTGCG
GCGAGTTTATGTACCGAGGGAAGAAGTTCAATATGCG
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Synonyms
Publications