jgi.p|Nanoce1779_2|641998, mRNA_8610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|641998
Unique NamemRNA_8610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1443
Alignment locationscaffold_26:336838..338280 -

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Properties
Property NameValue
TranscriptId642084
TrackFilteredModels2
ProteinId641998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:336838..338280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641998gene_8610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8610CDS_8610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641998mRNA_8610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8610 ID=mRNA_8610|Name=jgi.p|Nanoce1779_2|641998|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
ATGGCAATGGCCAAGCCCAATCCATCGGACTACACAATTGAGGCCCGCTC
CATCATCCGTAGCCTTTTGCCCGGCGGGTCCTGTGCAGGACAAGCCTGGG
ACAAACTTGCAGCCCTTACCGACACCGTGGGAAATCGTATATGTGGCTCA
CCTAATCTAGAGCGGGCCGTAGATTACATGCTGGATGCTTGGGCAGGAGA
GGGGCTGGAGAACGTGCATGGGGAGGAAGTGATTGTCCCACATTGGCATC
GAGGGCACGAGGAATGCATCATGCTCAGCCCTAGACAGGACTATCGCATG
CAAATTCTCGGGTTGGGTACCTCGGTTGGTACATCTAATGGGGAGCCCTT
GGAGGCGGATGTGGTGGTAGTCACAGACTTTGACGAGCTGTCTTCTCTAG
GTCAAGCGGGAAAAATACAAGGGAGAATCGTCTTGATGAACTATGTCTGT
GACTGGACTGGGAGCCCCATTGGGTGTTATGGTGTCTGTGGGAAATATCG
AAGCGAGGGAGCAAGCCGCGCTGCTGCTCAGGGGGCAGTAGCGTACTTGG
TCAGGTCACTGGCGTCGGCCTCGATAGGATCACCTCATACGGGCATGCAG
AGATACCTGCCTGACGTGACACCGATACGAATCCCCGCTGCTGCTGTAAC
GATTGAAGACGCCGATGCTTTGGCTAGGATGCAGGGACGAGGGCAGAACA
TCTCGTTGAGATTGACAATGGAATGCGAGAATTTACCCATGGAGAAGTCG
ATGAATGTGGTAGCGGAGTGGAAAGGCACTGAGAAACCGGAGGAAGTGGT
GATTGTTTCGGGGCATTTGGACTCATGGGATGTGGGGGTGGGAGCGATGG
ATGACGGGGGGGGTTTAGCTATCAGTTGGCAGGCGCTGTCGACGTTAAAG
AGGCTCGGCATGAGGGCAAAGAGGACGATAAGGGTGGTGGGGTGGGTGGG
GGAGGAATTTGGAGGGTACGGAGGGAGGGCCTATTTTGACCGGCATAAGG
CGGAGGAGGAGAGGGTTGTGATGGTGGTGGAGTCGGACATGGGTGTCTTT
CGGCCGGAGGGAATGTCGTTCTCGGGGGGGGAGAGGGCGGGGGAGGTGAT
GAAAGAAGTCATGTCGTTGTTGTCGCCGATCAACGCGTCGTTGCTAAAAA
CCGATGATGGAAGGGGGTACGAGACTGATACAGGGCCTTGGGAGGCAGTG
GGGGTGCCGGGAGCGAGCTTAAGCAGTCTGAATGAAGACTACTTTTGGTT
CCATCATTCCAACGGGGATCAGATGGGGGTGTTGAAGAAGGAGGACATGG
ACTTGGCTGCGGCTGTGTTTGCGGTAGTGGCTTTCGTGGTGGCGGATTTG
GACGAGGCGTTGCCGAGGGAGGGAGGGGTAGGGAGGGAGGAAATGGAGGA
GGAGGCGTTAAAGAGCGAGAGGTTGAGGGCTATGCGCGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|641998

>mRNA_8610-protein ID=mRNA_8610-protein|Name=jgi.p|Nanoce1779_2|641998|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MAMAKPNPSDYTIEARSIIRSLLPGGSCAGQAWDKLAALTDTVGNRICGS
PNLERAVDYMLDAWAGEGLENVHGEEVIVPHWHRGHEECIMLSPRQDYRM
QILGLGTSVGTSNGEPLEADVVVVTDFDELSSLGQAGKIQGRIVLMNYVC
DWTGSPIGCYGVCGKYRSEGASRAAAQGAVAYLVRSLASASIGSPHTGMQ
RYLPDVTPIRIPAAAVTIEDADALARMQGRGQNISLRLTMECENLPMEKS
MNVVAEWKGTEKPEEVVIVSGHLDSWDVGVGAMDDGGGLAISWQALSTLK
RLGMRAKRTIRVVGWVGEEFGGYGGRAYFDRHKAEEERVVMVVESDMGVF
RPEGMSFSGGERAGEVMKEVMSLLSPINASLLKTDDGRGYETDTGPWEAV
GVPGASLSSLNEDYFWFHHSNGDQMGVLKKEDMDLAAAVFAVVAFVVADL
DEALPREGGVGREEMEEEALKSERLRAMRA*
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mRNA from alignment at scaffold_26:336838..338280-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8610 ID=mRNA_8610|Name=jgi.p|Nanoce1779_2|641998|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp|location=Sequence derived from alignment at scaffold_26:336838..338280- (Nannochloropsis oceanica)
ATGGCAATGGCCAAGCCCAATCCATCGGACTACACAATTGAGGCCCGCTC
CATCATCCGTAGCCTTTTGCCCGGCGGGTCCTGTGCAGGACAAGCCTGGG
ACAAACTTGCAGCCCTTACCGACACCGTGGGAAATCGTATATGTGGCTCA
CCTAATCTAGAGCGGGCCGTAGATTACATGCTGGATGCTTGGGCAGGAGA
GGGGCTGGAGAACGTGCATGGGGAGGAAGTGATTGTCCCACATTGGCATC
GAGGGCACGAGGAATGCATCATGCTCAGCCCTAGACAGGACTATCGCATG
CAAATTCTCGGGTTGGGTACCTCGGTTGGTACATCTAATGGGGAGCCCTT
GGAGGCGGATGTGGTGGTAGTCACAGACTTTGACGAGCTGTCTTCTCTAG
GTCAAGCGGGAAAAATACAAGGGAGAATCGTCTTGATGAACTATGTCTGT
GACTGGACTGGGAGCCCCATTGGGTGTTATGGTGTCTGTGGGAAATATCG
AAGCGAGGGAGCAAGCCGCGCTGCTGCTCAGGGGGCAGTAGCGTACTTGG
TCAGGTCACTGGCGTCGGCCTCGATAGGATCACCTCATACGGGCATGCAG
AGATACCTGCCTGACGTGACACCGATACGAATCCCCGCTGCTGCTGTAAC
GATTGAAGACGCCGATGCTTTGGCTAGGATGCAGGGACGAGGGCAGAACA
TCTCGTTGAGATTGACAATGGAATGCGAGAATTTACCCATGGAGAAGTCG
ATGAATGTGGTAGCGGAGTGGAAAGGCACTGAGAAACCGGAGGAAGTGGT
GATTGTTTCGGGGCATTTGGACTCATGGGATGTGGGGGTGGGAGCGATGG
ATGACGGGGGGGGTTTAGCTATCAGTTGGCAGGCGCTGTCGACGTTAAAG
AGGCTCGGCATGAGGGCAAAGAGGACGATAAGGGTGGTGGGGTGGGTGGG
GGAGGAATTTGGAGGGTACGGAGGGAGGGCCTATTTTGACCGGCATAAGG
CGGAGGAGGAGAGGGTTGTGATGGTGGTGGAGTCGGACATGGGTGTCTTT
CGGCCGGAGGGAATGTCGTTCTCGGGGGGGGAGAGGGCGGGGGAGGTGAT
GAAAGAAGTCATGTCGTTGTTGTCGCCGATCAACGCGTCGTTGCTAAAAA
CCGATGATGGAAGGGGGTACGAGACTGATACAGGGCCTTGGGAGGCAGTG
GGGGTGCCGGGAGCGAGCTTAAGCAGTCTGAATGAAGACTACTTTTGGTT
CCATCATTCCAACGGGGATCAGATGGGGGTGTTGAAGAAGGAGGACATGG
ACTTGGCTGCGGCTGTGTTTGCGGTAGTGGCTTTCGTGGTGGCGGATTTG
GACGAGGCGTTGCCGAGGGAGGGAGGGGTAGGGAGGGAGGAAATGGAGGA
GGAGGCGTTAAAGAGCGAGAGGTTGAGGGCTATGCGCGCGTGA
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Coding sequence (CDS) from alignment at scaffold_26:336838..338280-

>mRNA_8610 ID=mRNA_8610|Name=jgi.p|Nanoce1779_2|641998|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at scaffold_26:336838..338280- (Nannochloropsis oceanica)
ATGGCAATGGCCAAGCCCAATCCATCGGACTACACAATTGAGGCCCGCTC
CATCATCCGTAGCCTTTTGCCCGGCGGGTCCTGTGCAGGACAAGCCTGGG
ACAAACTTGCAGCCCTTACCGACACCGTGGGAAATCGTATATGTGGCTCA
CCTAATCTAGAGCGGGCCGTAGATTACATGCTGGATGCTTGGGCAGGAGA
GGGGCTGGAGAACGTGCATGGGGAGGAAGTGATTGTCCCACATTGGCATC
GAGGGCACGAGGAATGCATCATGCTCAGCCCTAGACAGGACTATCGCATG
CAAATTCTCGGGTTGGGTACCTCGGTTGGTACATCTAATGGGGAGCCCTT
GGAGGCGGATGTGGTGGTAGTCACAGACTTTGACGAGCTGTCTTCTCTAG
GTCAAGCGGGAAAAATACAAGGGAGAATCGTCTTGATGAACTATGTCTGT
GACTGGACTGGGAGCCCCATTGGGTGTTATGGTGTCTGTGGGAAATATCG
AAGCGAGGGAGCAAGCCGCGCTGCTGCTCAGGGGGCAGTAGCGTACTTGG
TCAGGTCACTGGCGTCGGCCTCGATAGGATCACCTCATACGGGCATGCAG
AGATACCTGCCTGACGTGACACCGATACGAATCCCCGCTGCTGCTGTAAC
GATTGAAGACGCCGATGCTTTGGCTAGGATGCAGGGACGAGGGCAGAACA
TCTCGTTGAGATTGACAATGGAATGCGAGAATTTACCCATGGAGAAGTCG
ATGAATGTGGTAGCGGAGTGGAAAGGCACTGAGAAACCGGAGGAAGTGGT
GATTGTTTCGGGGCATTTGGACTCATGGGATGTGGGGGTGGGAGCGATGG
ATGACGGGGGGGGTTTAGCTATCAGTTGGCAGGCGCTGTCGACGTTAAAG
AGGCTCGGCATGAGGGCAAAGAGGACGATAAGGGTGGTGGGGTGGGTGGG
GGAGGAATTTGGAGGGTACGGAGGGAGGGCCTATTTTGACCGGCATAAGG
CGGAGGAGGAGAGGGTTGTGATGGTGGTGGAGTCGGACATGGGTGTCTTT
CGGCCGGAGGGAATGTCGTTCTCGGGGGGGGAGAGGGCGGGGGAGGTGAT
GAAAGAAGTCATGTCGTTGTTGTCGCCGATCAACGCGTCGTTGCTAAAAA
CCGATGATGGAAGGGGGTACGAGACTGATACAGGGCCTTGGGAGGCAGTG
GGGGTGCCGGGAGCGAGCTTAAGCAGTCTGAATGAAGACTACTTTTGGTT
CCATCATTCCAACGGGGATCAGATGGGGGTGTTGAAGAAGGAGGACATGG
ACTTGGCTGCGGCTGTGTTTGCGGTAGTGGCTTTCGTGGTGGCGGATTTG
GACGAGGCGTTGCCGAGGGAGGGAGGGGTAGGGAGGGAGGAAATGGAGGA
GGAGGCGTTAAAGAGCGAGAGGTTGAGGGCTATGCGCGCGTGA
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Synonyms
Publications