jgi.p|Nanoce1779_2|241947, mRNA_410 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|241947
Unique Name	mRNA_410
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1466
Alignment location	scaffold_3:1014840..1016483 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	242033
Track	FilteredModels2
ProteinId	241947

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1014840..1016483 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|241947	gene_410	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|241947	mRNA_410-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_410	CDS_410	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1014840..1016483-
coding sequence from alignment at scaffold_3:1014840..1016483-

mRNA sequence

>mRNA_410 ID=mRNA_410|Name=jgi.p|Nanoce1779_2|241947|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp
GTACCTTGAACAGCGCTTCCCTCGTTCGCGCCCCCTTGATCCTCGTCCTC
ATCCCTCGTGCGCTTCATGGCTACGCGGCGTGGCGTGTTCTGTGGTGTGT
GCAAGATGTGGGTAAAAGCGGGAGGACCGGAAGTGAAGAGAGCAGTCGTT
AGCGATGATGCCCAGCGGGACGCGTGAGCTCCAGCCACTGCTAATGCCCT
GGCCTCCCCTCTTCTCGAATTATCGGCCACCATCCACGTGCACCCTTTTG
TGAGAGCTATATGCTCAGTGCGCATGCGGCAGGAAGGCTCGATGCGGCGT
ATTTGTGGAGGGAGGGAGATGCAATAGCATCACATGGACCTGCACGCATG
CATGGCCCGAGAGCAGTATCTAACCACCCCGCCGCCCCATCCCCATCCCA
TCCCCTTCCCTCCACAGACCTTACAAACACACGTCAAAGCACCATGACAA
CAAAGAAGAAAATACAAGCAGTAAATAGAGATGACAGCGGCGACAACACA
GGCGAGGCAGTGCGTATGGTCACCTCCAGCTCTAGTACTGGGCCCGTTGA
CCTCCCCCTCAGCACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGG
CAGACGCCCCCGAAAGCTTTTGTGCACCGCCATCAGATATAGCAGAGAGC
CTCACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCC
CATCAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCG
AGACGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTG
GTGGTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGG
GGCAACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAG
AGAACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAA
GAGGATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGACGAG
GAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACGAATCTGACAACGTGAA
AGACAATGACAAGGACGAAGAGGAGGGTGTTGCCAAGGCGAGGAGGAAGA
AGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTTGAATGACGGGTTC
TTCGATTGGGAGGAGATGGAGAAGTTTGCGGATGAAATGGACGAAGAGGA
GTTCAATGACGACGAGGAAGATGAAAGTGATGATGATGATGAGGAGGAGG
AGGAGGAGGAGGATGGAAAGGAGATTCTAAATCGGGTGCCTTTGTGACGA
GCAGCAAGGAGGGGAAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCAT
GATGAGGCGGAAGATG

protein sequence of jgi.p|Nanoce1779_2|241947

>mRNA_410-protein ID=mRNA_410-protein|Name=jgi.p|Nanoce1779_2|241947|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MLSAHAAGRLDAAYLWREGDAIASHGPARMHGPRAVSNHPAAPSPSHPLP
STDLTNTRQSTMTTKKKIQAVNRDDSGDNTGEAVRMVTSSSSTGPVDLPL
STIEGALARLEYLADAPESFCAPPSDIAESLTQVLKTVFDHARKTQPIKL
GPLQELFVEGFDTETLWEQLQLRNPAVRKLVVKVTRRLMEKEKEEGGATM
MFEKEEEDIEERKENKSEGEEEESDVDEEEEDARMERLVEESGEEEEEEE
EEEEEEEEEEEEEEEEEEEEEEEEEEDDDEEEKEDAEGSADESDNVKDND
KDEEEGVAKARRKKGKKGAPLDKEALNDGFFDWEEMEKFADEMDEEEFND
DEEDESDDDDEEEEEEEDGKEILNRVPL*

mRNA from alignment at scaffold_3:1014840..1016483-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_410 ID=mRNA_410|Name=jgi.p|Nanoce1779_2|241947|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at scaffold_3:1014840..1016483- (Nannochloropsis oceanica)
GTACCTTGAACAGCGCTTCCCTCGTTCGCGCCCCCTTGATCCTCGTCCTC
ATCCCTCGTGCGCTTCATGGCTACGCGGCGTGGCGTGTTCTGTGGTGTGT
GCAAGATGTGGGTAAAAGCGGGAGGACCGGAAGTGAAGAGAGCAGTCGTT
AGCGATGATGCCCAGCGGGACGCGTGAGCTCCAGCCACTGCTAATGCCCT
GGCCTCCCCTCTTCTCGAATTATCGGCCACCATCCACGTGCACCCTTTTG
TGAGAGCTATATGCTCAGTGCGCATGCGGCAGGAAGGCTCGATGCGGCGT
ATTTGTGGAGGGAGGGAGATGCAATAGCATCACATGGACCTGCACGCATG
CATGGCCCGAGAGCAGTATCTAACCACCCCGCCGCCCCATCCCCATCCCA
TCCCCTTCCCTCCACAGACCTTACAAACACACGTCAAAGCACCATGACAA
CAAAGAAGAAAATACAAGCAGTAAATAGAGATGACAGCGGCGACAACACA
GGCGAGGCAGTGCGTATGGTCACCTCCAGCTCTAGTACTGGGCCCGTTGA
CCTCCCCCTCAGCACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGG
CAGACGCCCCCGAAAGCTTTTGTGCACCGCCATCAGATATAGCAGAGGTG
TGTATTTTGTAAGGATTCGGTAGCATACCCTTTTCCAAGTCTCAAAGTAC
CCATCTTCCCTCTCCCAATTTTCCCCCTTTCTTCCCCCCCCCCCCCACCC
AGAGCCTCACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGAAGACT
CAGCCCATCAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGA
TACCGAGACGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGA
AGTTGGTGGTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAG
GGAGGGGCAACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAG
GAAAGAGAACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGG
AGGAAGAGGATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATG
ACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACGAATCTGACAAC
GTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCCAAGGCGAGGAG
GAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTTGAATGACG
GGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATGAAATGGACGAA
GAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGATGATGATGAGGA
GGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCAGGACTTCTGGG
GGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGGAGAAGGGGGGA
GATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAGGGGAAACGGAA
ATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGAAGATG

Coding sequence (CDS) from alignment at scaffold_3:1014840..1016483-

>mRNA_410 ID=mRNA_410|Name=jgi.p|Nanoce1779_2|241947|organism=Nannochloropsis oceanica|type=CDS|length=3411bp|location=Sequence derived from alignment at scaffold_3:1014840..1016483- (Nannochloropsis oceanica)
TAAATCGGGTGCCTTTGTGAAGCCTCACTCAAGTGCTTAAGACCGTCTTC
GACCATGCCCGGAAGACTCAGCCCATCAAACTCGGGCCTCTACAAGAGTT
GTTTGTAGAGGGGTTTGATACCGAGACGCTATGGGAGCAGCTGCAGTTGC
GGAACCCGGCCGTACGGAAGTTGGTGGTGAAAGTGACGAGAAGGCTCATG
GAGAAAGAGAAGGAGGAGGGAGGGGCAACAATGATGTTTGAAAAGGAGGA
AGAGGATATAGAGGAGAGGAAAGAGAACAAGAGTGAGGGTGAGGAAGAGG
AGAGCGATGTGGACGAGGAGGAAGAGGATGCGCGGATGGAGCGGTTGGTG
GAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCC
GCAGACGAATCTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGG
TGTTGCCAAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATA
AGGAAGCGTTGAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTT
GCGGATGAAATGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAG
TGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTC
ATGCTCAGTGCGCATGCGGCAGGAAGGCTCGATGCGGCGTATTTGTGGAG
GGAGGGAGATGCAATAGCATCACATGGACCTGCACGCATGCATGGCCCGA
GAGCAGTATCTAACCACCCCGCCGCCCCATCCCCATCCCATCCCCTTCCC
TCCACAGACCTTACAAACACACGTCAAAGCACCATGACAACAAAGAAGAA
AATACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAG
TGCGTATGGTCACCTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTC
AGCACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCC
CGAAAGCTTTTGTGCACCGCCATCAGATATAGCAGAGTAAATCGGGTGCC
TTTGTGAAGCCTCACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGA
AGACTCAGCCCATCAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGG
TTTGATACCGAGACGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGT
ACGGAAGTTGGTGGTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGG
AGGAGGGAGGGGCAACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAG
GAGAGGAAAGAGAACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGA
CGAGGAGGAAGAGGATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
CGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACGAATCTG
ACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCCAAGGCG
AGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTTGAA
TGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATGAAATGG
ACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGATGATGAT
GAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCATGCTCAGTGCGC
ATGCGGCAGGAAGGCTCGATGCGGCGTATTTGTGGAGGGAGGGAGATGCA
ATAGCATCACATGGACCTGCACGCATGCATGGCCCGAGAGCAGTATCTAA
CCACCCCGCCGCCCCATCCCCATCCCATCCCCTTCCCTCCACAGACCTTA
CAAACACACGTCAAAGCACCATGACAACAAAGAAGAAAATACAAGCAGTA
AATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGCGTATGGTCAC
CTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGCACCATCGAAG
GAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGAAAGCTTTTGT
GCACCGCCATCAGATATAGCAGAGTAAATCGGGTGCCTTTGTGAAGCCTC
ACTCAAGTGCTTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCAT
CAAACTCGGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGA
CGCTATGGGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTG
GTGAAAGTGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGC
AACAATGATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGA
ACAAGAGTGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAG
GATGCGCGGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGATGACGAGGAG
GAAAAAGAGGACGCGGAGGGGTCCGCAGACGAATCTGACAACGTGAAAGA
CAATGACAAGGACGAAGAGGAGGGTGTTGCCAAGGCGAGGAGGAAGAAGG
GCAAAAAGGGCGCACCCTTGGATAAGGAAGCGTTGAATGACGGGTTCTTC
GATTGGGAGGAGATGGAGAAGTTTGCGGATGAAATGGACGAAGAGGAGTT
CAATGACGACGAGGAAGATGAAAGTGATGATGATGATGAGGAGGAGGAGG
AGGAGGAGGATGGAAAGGAGATTCATGCTCAGTGCGCATGCGGCAGGAAG
GCTCGATGCGGCGTATTTGTGGAGGGAGGGAGATGCAATAGCATCACATG
GACCTGCACGCATGCATGGCCCGAGAGCAGTATCTAACCACCCCGCCGCC
CCATCCCCATCCCATCCCCTTCCCTCCACAGACCTTACAAACACACGTCA
AAGCACCATGACAACAAAGAAGAAAATACAAGCAGTAAATAGAGATGACA
GCGGCGACAACACAGGCGAGGCAGTGCGTATGGTCACCTCCAGCTCTAGT
ACTGGGCCCGTTGACCTCCCCCTCAGCACCATCGAAGGAGCCTTGGCGCG
GCTCGAGTACCTGGCAGACGCCCCCGAAAGCTTTTGTGCACCGCCATCAG
ATATAGCAGAG

Synonyms

Publications