jgi.p|Nanoce1779_2|577374, mRNA_459 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577374
Unique Name	mRNA_459
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2849
Alignment location	scaffold_3:1120618..1123466 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577460
Track	FilteredModels2
ProteinId	577374

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1120618..1123466 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577374	gene_459	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577374	mRNA_459-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_459	CDS_459	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1120618..1123466-
coding sequence from alignment at scaffold_3:1120618..1123466-

mRNA sequence

>mRNA_459 ID=mRNA_459|Name=jgi.p|Nanoce1779_2|577374|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp
ACAGGCAGGGCGCTCAGTGTAGAAGCCAATTGTTTTAAGCCGCGCCTTTT
CCGACCCGCAACTGTACCACCAAGGCTCCACCTCGAGGTCAAGACAACAA
AACAACATCACTCCTCCCCTCATCAAGCACGTACGTGTGTCCTCCCCCTC
CCCTCGGAGAGACCAAATACCACCGGTACTTTTCACTGCAGCACCTCTAG
CACCAGCTCAACCACTGCCTGAAAGCATGGCCGAGTGCGTCCAACCCATC
GAGACGGAAGTCCCCTCCCACGCTCCCTCTCCCGCTCTACTCAAAGAGCT
GGAAGAAACCTGCGGCGATGGCCTAAGCAGCCCAGGGCACACCTTTTTCG
CTGCCTCTCCCCCCTCCCGCGTCGCTACTCCAGGCCTTATTCAACCCACT
AGCTGCGCATCGGCCGCTGAACACCCGGCTTTGGACGTGGTGTTGGGACC
CTTCGCCGTTAAGGAAACCTGCGTCGTCCTTGACTGGGATGACACTTTGT
TCCCTTCCTCTTTTGTCGACCGCAAAAAGCTGATTCACGCGCGGGGACTA
GATGACCTGCCCGTAGAGCTTCAACGGGGTTTTGCTGAATTGGAAAAGGC
GGCGACACGCTTGGTCACGACGGCTGTCGGTTTTGGCACCGTCCTCATCA
TCACCAACGCCCAAACAGGTTGGGTCGAGCTGTGCGTGTCCAAGTTCATG
CCTGACATGATGGCTGTGCTTGATGCTTCGGTGCGGGTGGTTTCCGCGCG
TTCATCGTTCGAGAGATATTTTCCCGGCGATCCCCTCTGTTGGAAAGCCG
CCGCTTTTGCCCACGAACTCCACCAGCTCCAAAAAAGCCTCGGCACCCCC
CTTAAGAACATCTTGTCCTTCGGCGACTCCATGGAAGAACGGACCGCAGT
TAAAATTGCAGCCGGTCAACTTCAATCCCGTGCAAAGTCGATTAAGTTTC
TGGATGCTCCCTCCCCGCGGCAGTTGCACCAGCAGATCGAAGTCGTCACG
GACTGTCTGGAGTGGATCTGGCGGCATAATGGCGACTTAGACGTCGTCCT
CACCCTCGAGCAAGAACATCAACAACAGCAGCAGCAGCAGCAGCAGTATC
ATCATCTTGGAGAAAGTCAGCAATCTCCTTTGTCCCAGCACCAGCAGCAA
CCGCAACCGCAGCCAATCTCGACCTTAACCCCCTTATCAGTGGCGACGCC
CTCTATTGAAGTCTTGGAGAAGACAGCCAAGAGAGAGTCGACCGATAGAC
CTGCGATTAAAGGGTCCTTCGAAGGAAATAAAACAATCGCGATGCCTGTT
GTGGTGACGCCGCTGGGAAGCGATAAAGGAGAGGCTGGAGCGCTCCCTGA
GGCAATGCATGTGGTGACCGACGAGGAGGAGAGCGAGGAGGAGAACTAAT
AAGCAGCAGTAGCAGCCGTAGCTTCTCTTCCAACGCGTATTCTTAGTACA
AGAGGGCCGTATATTCCCTCGTTCATGTTCCTTGTCCGTAACCTCCGTGT
CCAATCGCCGTCATGACGTCTAGTCTAACTAGTCTATACCATGCGTGCCC
TTCTCTTGTGGGAGGGACAGTTCCATATTTTATGTAGATGGGGAGATGAG
TAATTATAATCTATGCTGAGTGTACGGGGGGAGGATCAATGGGGAAGATC
GCCTCTCCAAACCATCACCACGAGTCATCAAGTCGAATTTTGTTTTATTT
GACCCATAGAATAGATAGATCCCCCCACCCGTGCGCGAGCTCAAAGGTAG
CCAGAGACAATTGAAAACGATGTGTTATTTATATGTGGCGTACTTAGAGT
TTGTACCGATCGTATTGAAAGGGGCATACATATCCACCCCACTGTATAGA
GAGGGATGATGACAGAGAGGAAAACGACCACCATGAGATGCGAGCGAGTT
TTAACCGAGATTTTGGGCGATAAAGAGATCAACTCTTCCCGAGAGGGCTC
AATCAATCACAAAAGAGACAACACAAAAAGGAGGAAAACCCACATAATTA
TGTGTGTACGATCTTGGCAGAGAGAGTATGGAAATATAAGGTCCGGAAGA
GAAGGGATAGCGAAGAATAGGAGAGAGACAGCAAAAGCAACGGCAAACGT
CGTTTGTGCATGTTTTACTCTCCCTCTGAATCCCTTCCTATTCCCCTCCC
TCCCCTGTCGAAGACCAATCTTTGTGAGTAATTTGTGAGTAAATTAGATT
GACCTGGGAGCGAACGGCAGGAAGGGTATACCAACAGATGCAGCAGCACA
GCAGCAGCGGCAGCAGTTCAGCAGAAGTAAACGTTTTATCATTATGTGTG
TACATACATCAGCACTGACATGCAAGGCAAGCAAGCGAGACGCGAAGTTG
TCGGTAGCCGTAGGAGGAGGTGGCTAGAGTAAAAGAGATCAAAAACACAA
GAATTGAAAAAGCGACGACGACGCAGCAACACCCGGAACAAGAATGGATG
GTAGAGATGATCGATCGAATATAAAGGCGCAGAATTATATCACTAAGCAT
GCAAATTGCAATGAAGGAGGATGAGTACCCATGGACCTGAAGGGAAAGAG
ACTCAGAGAGTTGCGTGTCCTCACCACCAATATTGTTGGAGGGAGGGGGG
GACGCCGTAACCACTACCACCACAGAACACTAGAGAACGCTACCAACGAG
ATGTAATAACTGTCATCGATTCATCGGCAAATAGAACGAAAAGAGATGGA
TGAAGAAACGAGAGAAAACGGATAAAGGAGCAGAGATATAGCGGCGGGTG
TGTAGAAAGGCAAGACACTTACCATACCCGGGACCGTGGAGGTATAACAA
GATGAAACAAAAAGATTTAAAGAAAGATTTAACACATAAGACTTGATAA

protein sequence of jgi.p|Nanoce1779_2|577374

>mRNA_459-protein ID=mRNA_459-protein|Name=jgi.p|Nanoce1779_2|577374|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MAECVQPIETEVPSHAPSPALLKELEETCGDGLSSPGHTFFAASPPSRVA
TPGLIQPTSCASAAEHPALDVVLGPFAVKETCVVLDWDDTLFPSSFVDRK
KLIHARGLDDLPVELQRGFAELEKAATRLVTTAVGFGTVLIITNAQTGWV
ELCVSKFMPDMMAVLDASVRVVSARSSFERYFPGDPLCWKAAAFAHELHQ
LQKSLGTPLKNILSFGDSMEERTAVKIAAGQLQSRAKSIKFLDAPSPRQL
HQQIEVVTDCLEWIWRHNGDLDVVLTLEQEHQQQQQQQQQYHHLGESQQS
PLSQHQQQPQPQPISTLTPLSVATPSIEVLEKTAKRESTDRPAIKGSFEG
NKTIAMPVVVTPLGSDKGEAGALPEAMHVVTDEEESEEEN*

mRNA from alignment at scaffold_3:1120618..1123466-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_459 ID=mRNA_459|Name=jgi.p|Nanoce1779_2|577374|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp|location=Sequence derived from alignment at scaffold_3:1120618..1123466- (Nannochloropsis oceanica)
ACAGGCAGGGCGCTCAGTGTAGAAGCCAATTGTTTTAAGCCGCGCCTTTT
CCGACCCGCAACTGTACCACCAAGGCTCCACCTCGAGGTCAAGACAACAA
AACAACATCACTCCTCCCCTCATCAAGCACGTACGTGTGTCCTCCCCCTC
CCCTCGGAGAGACCAAATACCACCGGTACTTTTCACTGCAGCACCTCTAG
CACCAGCTCAACCACTGCCTGAAAGCATGGCCGAGTGCGTCCAACCCATC
GAGACGGAAGTCCCCTCCCACGCTCCCTCTCCCGCTCTACTCAAAGAGCT
GGAAGAAACCTGCGGCGATGGCCTAAGCAGCCCAGGGCACACCTTTTTCG
CTGCCTCTCCCCCCTCCCGCGTCGCTACTCCAGGCCTTATTCAACCCACT
AGCTGCGCATCGGCCGCTGAACACCCGGCTTTGGACGTGGTGTTGGGACC
CTTCGCCGTTAAGGAAACCTGCGTCGTCCTTGACTGGGATGACACTTTGT
TCCCTTCCTCTTTTGTCGACCGCAAAAAGCTGATTCACGCGCGGGGACTA
GATGACCTGCCCGTAGAGCTTCAACGGGGTTTTGCTGAATTGGAAAAGGC
GGCGACACGCTTGGTCACGACGGCTGTCGGTTTTGGCACCGTCCTCATCA
TCACCAACGCCCAAACAGGTTGGGTCGAGCTGTGCGTGTCCAAGTTCATG
CCTGACATGATGGCTGTGCTTGATGCTTCGGTGCGGGTGGTTTCCGCGCG
TTCATCGTTCGAGAGATATTTTCCCGGCGATCCCCTCTGTTGGAAAGCCG
CCGCTTTTGCCCACGAACTCCACCAGCTCCAAAAAAGCCTCGGCACCCCC
CTTAAGAACATCTTGTCCTTCGGCGACTCCATGGAAGAACGGACCGCAGT
TAAAATTGCAGCCGGTCAACTTCAATCCCGTGCAAAGTCGATTAAGTTTC
TGGATGCTCCCTCCCCGCGGCAGTTGCACCAGCAGATCGAAGTCGTCACG
GACTGTCTGGAGTGGATCTGGCGGCATAATGGCGACTTAGACGTCGTCCT
CACCCTCGAGCAAGAACATCAACAACAGCAGCAGCAGCAGCAGCAGTATC
ATCATCTTGGAGAAAGTCAGCAATCTCCTTTGTCCCAGCACCAGCAGCAA
CCGCAACCGCAGCCAATCTCGACCTTAACCCCCTTATCAGTGGCGACGCC
CTCTATTGAAGTCTTGGAGAAGACAGCCAAGAGAGAGTCGACCGATAGAC
CTGCGATTAAAGGGTCCTTCGAAGGAAATAAAACAATCGCGATGCCTGTT
GTGGTGACGCCGCTGGGAAGCGATAAAGGAGAGGCTGGAGCGCTCCCTGA
GGCAATGCATGTGGTGACCGACGAGGAGGAGAGCGAGGAGGAGAACTAAT
AAGCAGCAGTAGCAGCCGTAGCTTCTCTTCCAACGCGTATTCTTAGTACA
AGAGGGCCGTATATTCCCTCGTTCATGTTCCTTGTCCGTAACCTCCGTGT
CCAATCGCCGTCATGACGTCTAGTCTAACTAGTCTATACCATGCGTGCCC
TTCTCTTGTGGGAGGGACAGTTCCATATTTTATGTAGATGGGGAGATGAG
TAATTATAATCTATGCTGAGTGTACGGGGGGAGGATCAATGGGGAAGATC
GCCTCTCCAAACCATCACCACGAGTCATCAAGTCGAATTTTGTTTTATTT
GACCCATAGAATAGATAGATCCCCCCACCCGTGCGCGAGCTCAAAGGTAG
CCAGAGACAATTGAAAACGATGTGTTATTTATATGTGGCGTACTTAGAGT
TTGTACCGATCGTATTGAAAGGGGCATACATATCCACCCCACTGTATAGA
GAGGGATGATGACAGAGAGGAAAACGACCACCATGAGATGCGAGCGAGTT
TTAACCGAGATTTTGGGCGATAAAGAGATCAACTCTTCCCGAGAGGGCTC
AATCAATCACAAAAGAGACAACACAAAAAGGAGGAAAACCCACATAATTA
TGTGTGTACGATCTTGGCAGAGAGAGTATGGAAATATAAGGTCCGGAAGA
GAAGGGATAGCGAAGAATAGGAGAGAGACAGCAAAAGCAACGGCAAACGT
CGTTTGTGCATGTTTTACTCTCCCTCTGAATCCCTTCCTATTCCCCTCCC
TCCCCTGTCGAAGACCAATCTTTGTGAGTAATTTGTGAGTAAATTAGATT
GACCTGGGAGCGAACGGCAGGAAGGGTATACCAACAGATGCAGCAGCACA
GCAGCAGCGGCAGCAGTTCAGCAGAAGTAAACGTTTTATCATTATGTGTG
TACATACATCAGCACTGACATGCAAGGCAAGCAAGCGAGACGCGAAGTTG
TCGGTAGCCGTAGGAGGAGGTGGCTAGAGTAAAAGAGATCAAAAACACAA
GAATTGAAAAAGCGACGACGACGCAGCAACACCCGGAACAAGAATGGATG
GTAGAGATGATCGATCGAATATAAAGGCGCAGAATTATATCACTAAGCAT
GCAAATTGCAATGAAGGAGGATGAGTACCCATGGACCTGAAGGGAAAGAG
ACTCAGAGAGTTGCGTGTCCTCACCACCAATATTGTTGGAGGGAGGGGGG
GACGCCGTAACCACTACCACCACAGAACACTAGAGAACGCTACCAACGAG
ATGTAATAACTGTCATCGATTCATCGGCAAATAGAACGAAAAGAGATGGA
TGAAGAAACGAGAGAAAACGGATAAAGGAGCAGAGATATAGCGGCGGGTG
TGTAGAAAGGCAAGACACTTACCATACCCGGGACCGTGGAGGTATAACAA
GATGAAACAAAAAGATTTAAAGAAAGATTTAACACATAAGACTTGATAA

Coding sequence (CDS) from alignment at scaffold_3:1120618..1123466-

>mRNA_459 ID=mRNA_459|Name=jgi.p|Nanoce1779_2|577374|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_3:1120618..1123466- (Nannochloropsis oceanica)
ATGGCCGAGTGCGTCCAACCCATCGAGACGGAAGTCCCCTCCCACGCTCC
CTCTCCCGCTCTACTCAAAGAGCTGGAAGAAACCTGCGGCGATGGCCTAA
GCAGCCCAGGGCACACCTTTTTCGCTGCCTCTCCCCCCTCCCGCGTCGCT
ACTCCAGGCCTTATTCAACCCACTAGCTGCGCATCGGCCGCTGAACACCC
GGCTTTGGACGTGGTGTTGGGACCCTTCGCCGTTAAGGAAACCTGCGTCG
TCCTTGACTGGGATGACACTTTGTTCCCTTCCTCTTTTGTCGACCGCAAA
AAGCTGATTCACGCGCGGGGACTAGATGACCTGCCCGTAGAGCTTCAACG
GGGTTTTGCTGAATTGGAAAAGGCGGCGACACGCTTGGTCACGACGGCTG
TCGGTTTTGGCACCGTCCTCATCATCACCAACGCCCAAACAGGTTGGGTC
GAGCTGTGCGTGTCCAAGTTCATGCCTGACATGATGGCTGTGCTTGATGC
TTCGGTGCGGGTGGTTTCCGCGCGTTCATCGTTCGAGAGATATTTTCCCG
GCGATCCCCTCTGTTGGAAAGCCGCCGCTTTTGCCCACGAACTCCACCAG
CTCCAAAAAAGCCTCGGCACCCCCCTTAAGAACATCTTGTCCTTCGGCGA
CTCCATGGAAGAACGGACCGCAGTTAAAATTGCAGCCGGTCAACTTCAAT
CCCGTGCAAAGTCGATTAAGTTTCTGGATGCTCCCTCCCCGCGGCAGTTG
CACCAGCAGATCGAAGTCGTCACGGACTGTCTGGAGTGGATCTGGCGGCA
TAATGGCGACTTAGACGTCGTCCTCACCCTCGAGCAAGAACATCAACAAC
AGCAGCAGCAGCAGCAGCAGTATCATCATCTTGGAGAAAGTCAGCAATCT
CCTTTGTCCCAGCACCAGCAGCAACCGCAACCGCAGCCAATCTCGACCTT
AACCCCCTTATCAGTGGCGACGCCCTCTATTGAAGTCTTGGAGAAGACAG
CCAAGAGAGAGTCGACCGATAGACCTGCGATTAAAGGGTCCTTCGAAGGA
AATAAAACAATCGCGATGCCTGTTGTGGTGACGCCGCTGGGAAGCGATAA
AGGAGAGGCTGGAGCGCTCCCTGAGGCAATGCATGTGGTGACCGACGAGG
AGGAGAGCGAGGAGGAGAACTAA

Synonyms

Publications