jgi.p|Nanoce1779_2|636659, mRNA_288 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636659
Unique Name	mRNA_288
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1722
Alignment location	scaffold_3:711105..713200 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	636745
Track	FilteredModels2
ProteinId	636659

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:711105..713200 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636659	gene_288	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636659	mRNA_288-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_288	CDS_288	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:711105..713200+
coding sequence from alignment at scaffold_3:711105..713200+

mRNA sequence

>mRNA_288 ID=mRNA_288|Name=jgi.p|Nanoce1779_2|636659|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTAGGAGGCGACATCGTCGATCTCGCCCTCG
GCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGTGGCTGT
GTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTATTGCCTC
CCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCGTCCAAG
ACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATGGGCAGG
GACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCGGTATTC
AGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGCTTAGGG
AGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGGGCAGCG
GCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTCGATCCC
GATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGGAGGGGG
GGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTTTACCCC
GTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGCAGCTGA
ATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACGTGAGGG
AGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTCCCGGCG
CTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGATGTGCT
CCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGGCTGGAA
TGACGCCCGCCGAGGGCATCACGCATGCCTGGGCCGCACTCCAGAACACT
GCGGCGTTTGATCTAACCGGCCACCCGGCCTTGAGCGTTAATGCTGGGGT
TTCTTCCCCCGCTTCGTCGTCCTCCGGAAGGGCGGGCAAGAAAGGGAATG
GGGGGTTGCCGATTGGCGTGCAAGTGGTTGGAAGACGATGGGAGGATGCC
ACTGTACTGAATGTGGGGCGGGCTATTGAATTGGGGTCAGGACTCAAGCC
CTTGCAGTCAGGGGGAGGGTGA

protein sequence of jgi.p|Nanoce1779_2|636659

>mRNA_288-protein ID=mRNA_288-protein|Name=jgi.p|Nanoce1779_2|636659|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MPSSNLCFVSSSSSKPPSSSKVKNPARAAYKTPAVRLPSLDRLQGINEDW
GLELNDDEVEGLRGCMKHAVEAYQRVDELANSRNSSTFAPLAQFPRIPGG
SRPSPEENFCNAWYMETDIRGRTSKEDEKQLLLEGKTVAIKDTIAVAGVP
MMNGSRILEGYTPEFEATVVTRVLEAGGIIKGKAVAEDLCCSASSFATAL
APVRNPWNEEYAAGGSSSGCGALVGGDIVDLALGTDQGGSIRVPASWCGC
VGLKPTFGLVPYTGIASHEFTLDHVGPMARTVQDTALLLEATAGLDPMGR
DARQPPTLASLSLPRYSVLATGEVSGVRVGVLREGLENCEEDVKEATWAA
AMGLRKAGAVVEEISIPMHRDSAALWLPLCLEGGHATRMEGERGFKGFYP
VSLTQAYFRGFRLQAAELSCTNKYYVLFGEYVRETYGNQYYQKCQNLLPA
LRQAYDDVLVQQRVDVLLLPTLPIKPQRLPKAGMTPAEGITHAWAALQNT
AAFDLTGHPALSVNAGVSSPASSSSGRAGKKGNGGLPIGVQVVGRRWEDA
TVLNVGRAIELGSGLKPLQSGGG*

mRNA from alignment at scaffold_3:711105..713200+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_288 ID=mRNA_288|Name=jgi.p|Nanoce1779_2|636659|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp|location=Sequence derived from alignment at scaffold_3:711105..713200+ (Nannochloropsis oceanica)
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTACGTTAGGACAAAGGACAGCAGCTGGACG
TGCTTGATTGTATGTTATGGTGCGAGTTGCCGCATCACAGTCCTCTGACC
GACAGAGCTTTCATCCTTCCAAAAATTCTCCTCACATTTCCTCCTTCTCT
ACTTCTCATCTACACCACACCACAGGTAGGAGGCGACATCGTCGATCTCG
CCCTCGGCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGT
GGCTGTGTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTAT
TGCCTCCCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCG
TCCAAGACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATG
GGCAGGGACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCG
GTATTCAGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGC
TTAGGGAGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGG
GCAGCGGCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTC
GATCCCGATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGG
AGGGGGGGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTT
TACCCCGTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGC
AGCTGAATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACG
TGAGGGAGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTC
CCGGCGCTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGA
TGTGCTCCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGG
CTGGAATGACGCCCGCCGAGGTAAGTCTGCTACTTCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCCCTTTCTCATCCCATGCCCGCCCACCAAGCCCAAGC
TCATGCCACCGGCTGGAAGGACCCCACGAGGGTTAAATCCGTCCTTTCCC
CTCTCTCCCTTTCCCTTTCTCCCTGAATTGAAGTCCTTGCACTCATCATC
CCTTATCTTCTTGCGTCTCTCCCGTGCTCCTTTTTTAGGGCATCACGCAT
GCCTGGGCCGCACTCCAGAACACTGCGGCGTTTGATCTAACCGGCCACCC
GGCCTTGAGCGTTAATGCTGGGGTTTCTTCCCCCGCTTCGTCGTCCTCCG
GAAGGGCGGGCAAGAAAGGGAATGGGGGGTTGCCGATTGGCGTGCAAGTG
GTTGGAAGACGATGGGAGGATGCCACTGTACTGAATGTGGGGCGGGCTAT
TGAATTGGGGTCAGGACTCAAGCCCTTGCAGTCAGGGGGAGGGTGA

Coding sequence (CDS) from alignment at scaffold_3:711105..713200+

>mRNA_288 ID=mRNA_288|Name=jgi.p|Nanoce1779_2|636659|organism=Nannochloropsis oceanica|type=CDS|length=5166bp|location=Sequence derived from alignment at scaffold_3:711105..713200+ (Nannochloropsis oceanica)
ATGCCGTCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCC
TTCGTCGTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTG
CAGTGCGGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGG
GGTTTGGAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAA
GCACGCAGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCA
ACAGCTCTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGG
AGCCGCCCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGAC
TGACATCCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAG
AGGGAAAGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCG
ATGATGAATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGC
CACAGTTGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGG
CCGTTGCGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTA
GCACCCGTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAG
CTCAGGCTGTGGAGCTTTGGTAGGAGGCGACATCGTCGATCTCGCCCTCG
GCACCGACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGTGGCTGT
GTGGGTCTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTATTGCCTC
CCACGAGTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCGTCCAAG
ACACAGCCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATGGGCAGG
GACGCTCGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCGGTATTC
AGTGTTGGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGCTTAGGG
AGGGATTGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGGGCAGCG
GCGATGGGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTCGATCCC
GATGCATCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGGAGGGGG
GGCATGCGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTTTACCCC
GTTTCACTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGCAGCTGA
ATTGAGTTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACGTGAGGG
AGACCTATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTCCCGGCG
CTCAGGCAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGATGTGCT
CCTCCTCCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGGCTGGAA
TGACGCCCGCCGAGGGCATCACGCATGCCTGGGCCGCACTCCAGAACACT
GCGGCGTTTGATCTAACCGGCCACCCGGCCTTGAGCGTTAATGCTGGGGT
TTCTTCCCCCGCTTCGTCGTCCTCCGGAAGGGCGGGCAAGAAAGGGAATG
GGGGGTTGCCGATTGGCGTGCAAGTGGTTGGAAGACGATGGGAGGATGCC
ACTGTACTGAATGTGGGGCGGGCTATTGAATTGGGGTCAGGACTCAAGCC
CTTGCAGTCAGGGGGAGGGTGAATGCCGTCCAGCAACCTGTGCTTCGTCT
CGTCGTCCTCTTCCAAGCCCCCTTCGTCGTCCAAGGTCAAGAACCCAGCC
CGGGCAGCGTACAAGACACCTGCAGTGCGGCTGCCCAGTCTTGATCGCTT
ACAAGGAATCAATGAGGATTGGGGTTTGGAGCTGAATGATGACGAGGTGG
AGGGCCTTCGAGGGTGCATGAAGCACGCAGTAGAGGCTTACCAACGCGTC
GATGAACTAGCCAACAGCCGCAACAGCTCTACCTTCGCACCCCTGGCCCA
GTTCCCCCGTATACCGGGTGGGAGCCGCCCAAGTCCTGAGGAAAATTTTT
GTAATGCCTGGTACATGGAGACTGACATCCGCGGCCGGACAAGCAAGGAA
GATGAGAAGCAGCTTTTACTAGAGGGAAAGACGGTCGCAATTAAGGACAC
GATCGCCGTGGCGGGCGTGCCGATGATGAATGGCTCGCGTATTCTAGAAG
GCTACACACCAGAGTTTGAAGCCACAGTTGTGACGCGGGTCCTGGAGGCA
GGCGGGATTATCAAGGGAAAGGCCGTTGCGGAGGACTTGTGTTGTTCTGC
TAGCTCCTTTGCGACAGCTCTAGCACCCGTACGGAACCCTTGGAATGAAG
AGTATGCGGCCGGTGGGTCCAGCTCAGGCTGTGGAGCTTTGGTAGGAGGC
GACATCGTCGATCTCGCCCTCGGCACCGACCAAGGGGGTTCCATCCGGGT
ACCTGCCTCTTGGTGTGGCTGTGTGGGTCTCAAACCCACCTTTGGCCTGG
TGCCTTACACTGGTATTGCCTCCCACGAGTTCACCCTCGACCACGTCGGG
CCTATGGCGAGGACCGTCCAAGACACAGCCCTCCTCCTTGAGGCTACTGC
CGGTCTTGACCCGATGGGCAGGGACGCTCGACAGCCACCCACTCTAGCCT
CTTTGTCGTTGCCGCGGTATTCAGTGTTGGCCACGGGAGAGGTTTCTGGT
GTGAGGGTGGGGGTGCTTAGGGAGGGATTGGAGAACTGCGAGGAGGATGT
GAAGGAGGCGACGTGGGCAGCGGCGATGGGGTTGAGAAAAGCGGGTGCGG
TGGTGGAGGAGATTTCGATCCCGATGCATCGCGATAGTGCTGCTTTGTGG
CTGCCGTTGTGCTTGGAGGGGGGGCATGCGACACGTATGGAGGGGGAGAG
GGGGTTCAAGGGCTTTTACCCCGTTTCACTCACACAGGCTTACTTCCGGG
GCTTCCGGCTTCAGGCAGCTGAATTGAGTTGTACGAATAAATATTACGTC
TTGTTTGGGGAGTACGTGAGGGAGACCTATGGGAATCAGTACTATCAAAA
GTGTCAGAATTTACTCCCGGCGCTCAGGCAGGCCTACGATGACGTCCTGG
TGCAGCAAAGGGTTGATGTGCTCCTCCTCCCCACCTTACCCATCAAGCCC
CAACGTTTACCCAAGGCTGGAATGACGCCCGCCGAGGGCATCACGCATGC
CTGGGCCGCACTCCAGAACACTGCGGCGTTTGATCTAACCGGCCACCCGG
CCTTGAGCGTTAATGCTGGGGTTTCTTCCCCCGCTTCGTCGTCCTCCGGA
AGGGCGGGCAAGAAAGGGAATGGGGGGTTGCCGATTGGCGTGCAAGTGGT
TGGAAGACGATGGGAGGATGCCACTGTACTGAATGTGGGGCGGGCTATTG
AATTGGGGTCAGGACTCAAGCCCTTGCAGTCAGGGGGAGGGTGAATGCCG
TCCAGCAACCTGTGCTTCGTCTCGTCGTCCTCTTCCAAGCCCCCTTCGTC
GTCCAAGGTCAAGAACCCAGCCCGGGCAGCGTACAAGACACCTGCAGTGC
GGCTGCCCAGTCTTGATCGCTTACAAGGAATCAATGAGGATTGGGGTTTG
GAGCTGAATGATGACGAGGTGGAGGGCCTTCGAGGGTGCATGAAGCACGC
AGTAGAGGCTTACCAACGCGTCGATGAACTAGCCAACAGCCGCAACAGCT
CTACCTTCGCACCCCTGGCCCAGTTCCCCCGTATACCGGGTGGGAGCCGC
CCAAGTCCTGAGGAAAATTTTTGTAATGCCTGGTACATGGAGACTGACAT
CCGCGGCCGGACAAGCAAGGAAGATGAGAAGCAGCTTTTACTAGAGGGAA
AGACGGTCGCAATTAAGGACACGATCGCCGTGGCGGGCGTGCCGATGATG
AATGGCTCGCGTATTCTAGAAGGCTACACACCAGAGTTTGAAGCCACAGT
TGTGACGCGGGTCCTGGAGGCAGGCGGGATTATCAAGGGAAAGGCCGTTG
CGGAGGACTTGTGTTGTTCTGCTAGCTCCTTTGCGACAGCTCTAGCACCC
GTACGGAACCCTTGGAATGAAGAGTATGCGGCCGGTGGGTCCAGCTCAGG
CTGTGGAGCTTTGGTAGGAGGCGACATCGTCGATCTCGCCCTCGGCACCG
ACCAAGGGGGTTCCATCCGGGTACCTGCCTCTTGGTGTGGCTGTGTGGGT
CTCAAACCCACCTTTGGCCTGGTGCCTTACACTGGTATTGCCTCCCACGA
GTTCACCCTCGACCACGTCGGGCCTATGGCGAGGACCGTCCAAGACACAG
CCCTCCTCCTTGAGGCTACTGCCGGTCTTGACCCGATGGGCAGGGACGCT
CGACAGCCACCCACTCTAGCCTCTTTGTCGTTGCCGCGGTATTCAGTGTT
GGCCACGGGAGAGGTTTCTGGTGTGAGGGTGGGGGTGCTTAGGGAGGGAT
TGGAGAACTGCGAGGAGGATGTGAAGGAGGCGACGTGGGCAGCGGCGATG
GGGTTGAGAAAAGCGGGTGCGGTGGTGGAGGAGATTTCGATCCCGATGCA
TCGCGATAGTGCTGCTTTGTGGCTGCCGTTGTGCTTGGAGGGGGGGCATG
CGACACGTATGGAGGGGGAGAGGGGGTTCAAGGGCTTTTACCCCGTTTCA
CTCACACAGGCTTACTTCCGGGGCTTCCGGCTTCAGGCAGCTGAATTGAG
TTGTACGAATAAATATTACGTCTTGTTTGGGGAGTACGTGAGGGAGACCT
ATGGGAATCAGTACTATCAAAAGTGTCAGAATTTACTCCCGGCGCTCAGG
CAGGCCTACGATGACGTCCTGGTGCAGCAAAGGGTTGATGTGCTCCTCCT
CCCCACCTTACCCATCAAGCCCCAACGTTTACCCAAGGCTGGAATGACGC
CCGCCGAGGGCATCACGCATGCCTGGGCCGCACTCCAGAACACTGCGGCG
TTTGATCTAACCGGCCACCCGGCCTTGAGCGTTAATGCTGGGGTTTCTTC
CCCCGCTTCGTCGTCCTCCGGAAGGGCGGGCAAGAAAGGGAATGGGGGGT
TGCCGATTGGCGTGCAAGTGGTTGGAAGACGATGGGAGGATGCCACTGTA
CTGAATGTGGGGCGGGCTATTGAATTGGGGTCAGGACTCAAGCCCTTGCA
GTCAGGGGGAGGGTGA

Synonyms

Publications