jgi.p|Nanoce1779_2|633269, mRNA_9016 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633269
Unique Name	mRNA_9016
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2121
Alignment location	scaffold_30:211213..213544 -

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Properties


Property Name	Value
TranscriptId	633355
Track	FilteredModels2
ProteinId	633269

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:211213..213544 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633269	gene_9016	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633269	mRNA_9016-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9016	CDS_9016	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:211213..213544-
coding sequence from alignment at scaffold_30:211213..213544-

mRNA sequence

>mRNA_9016 ID=mRNA_9016|Name=jgi.p|Nanoce1779_2|633269|organism=Nannochloropsis oceanica|type=mRNA|length=2121bp
GGGGAAGAGGGGGAAGGAGGGGAGGGAGGGAAGGATGAAGGGGCAGCTGA
AGGAGCCGTATCGAATGGAGCGCCTCTTCTCTCCTACACCTGCCTGAAGG
AAGTCATTCGCCTTGCCTACCAATGCCACCTCCTATCCTCTCCCGCTCCT
GTTGTCCCTCCTTCGGGCCCTCCTTCCTCAGCGTCCTCCACCTCTACATC
GCCTCGTCCTCCCACTTCTCCTACTCCTCCTACTCCTACTCCTACTCCTC
CTACTCATGTCCTCACTTTCGATACGACTCTCTTCCACCACCCGCTCATC
CGAGACCATAACATTCCCCCTCCCACCTCCTCCTTCCACCCTGCTATGCC
CTCCTTGCCCTCCTTCGCTTCCTCCCTCACTTCCTCGCCCTCTGAATTCT
CCATCACTGAAGAGGAAGAGCCGGCCGTTTCTTTCGACGAATTTTACGTA
TGGGCCACAGAGTCGTTCCCTCTCCTTTATCAACCCTTTGCTGCATTCAT
GTATTCGCGTCTTTTTGCCAACTGTGAGATGGGTGTCCCCCCCCTGCCCC
TCCCCCCCTCCCTCCGCCTCGCCCTTCCCGAGCTCTTGAGCCGTTCCTAC
ATCCTAAGCTCTGAGCACTCCCTGTTTGGACTGGCCCTTGCTTCGCCCTA
TCTGCAAGGGGCATGGACGAGGCTTTACACGAGTGAGGAGAATGGGCTGA
GTTTTAACAGAATCTGTCATCATATTCTTGGCTACCGAGGTCCCACCGTC
CTTCTCCTCCGCGACACCACCGGCGCCGTCTTCGGTTTCTTTACCAACGA
CACGTGGAAGGAGAGCAACTCCTTCTTCGGCTCCTCAGAATGCTTCCTCT
TCCGCCTTTCTCCCTCCTTTGTGGAGATACGCCCCAAGGCTAGCGGGCAC
GGGCAAGGCGGGGCGAAGCACTATATGTACCTTAATCTGAAAGGTTTCTC
GTTGCCGCATGGACTGGGGGTAGGAGGGAGCATCGATGGTGGGTTTAGGC
TGTGGATCCCGGAGAGTTTGGATGGTTGCGTGGCCGGCACTCGGGACGGT
ACGTTCGAGTGGGGGCCTCTGGGAGGAGGGGGGGGAAGGGGGATGGATGG
AGGGAGGGAGGGCGAGTTTGATATGGAGGGATTGGAGGTGTGGGGGGTAG
GGGGGGAGGAGAGGATTGGGGCAGCGGTAAGTGCGCAGGGTCATGCGCGG
GATCTGCGGGCAGAGATCATTGCGAAAGCTCGCAAGGTGGACAAGAGCAA
ATTTCTAGACAACGAATTCGACAAGGAATTTTTGCTGGGCAAAACCTTTG
GACATGGGAAACGGGAGCAAATGGGAAGGGACTGAGGAAGAAGTAAAGGA
AGTCTTGTCCTTCTCTCTCTGTTACACGACAGGCTGCCTGTCATGTGTGT
ATATATACATACGAGTTTTTTTTTTCAACTACATAAACGGGTTGTCGTCC
GCGGGGAGGGCACGAGAAAGTCTCTGCCTGTCGTGTCGTGTACCTTCATC
GTGCCTCTCTTCTCTCTCAACGGTTTAGCCTTCTGATACAGCATCATATC
TGGCGGAAGGGGGAAACATTGTGATACAAGAGCAAATCCTGCGAAACAAG
AGCAAATCATGCACCATAAAAGGTTCCGCGGAGGCGACTCTGGTGGGACC
GACGCAATCGCATGTCTTTTTTTTTCGAATGTACTTGAATTCCCCGTCGA
GAAATGTCAGCATCCAATTCATCACCATCGAAATCTCTGTTTTGGGACAA
GAACCAGCGCCGAATTCCTTTCTATAATACCCCTCTTCGTAGGAGACTCT
TTTTTTGTCTTGATGGCTCGTATTGAGGGGAGGCGAAACGGGAGGCATAG
AGGCATGGAAAAGAGAATAGAGAGTTGGCAGACGAAGAAACGAGAAAGAA
GTAGTCGAGCCTCGAAAAAGTTGCGAAGCACATTCGCCGCCTCGTGTCAC
GTGGAGGGAGAAGGGAAAGAAGAGCGACAGTGCGTAAAGACAGATTTGAC
TTTTTGAAAAGTAAGACCAGCACGCACCAAAATACACGTAGAGCGGGGGA
ATTAAGACCATTGACAGGCTCCTAGAGCCAAAATGTACAAAAGAGAAAGA
AGTGGAAGAATGAGGAAGAAT

protein sequence of jgi.p|Nanoce1779_2|633269

>mRNA_9016-protein ID=mRNA_9016-protein|Name=jgi.p|Nanoce1779_2|633269|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MPSLPSFASSLTSSPSEFSITEEEEPAVSFDEFYVWATESFPLLYQPFAA
FMYSRLFANCEMGVPPLPLPPSLRLALPELLSRSYILSSEHSLFGLALAS
PYLQGAWTRLYTSEENGLSFNRICHHILGYRGPTVLLLRDTTGAVFGFFT
NDTWKESNSFFGSSECFLFRLSPSFVEIRPKASGHGQGGAKHYMYLNLKG
FSLPHGLGVGGSIDGGFRLWIPESLDGCVAGTRDGTFEWGPLGGGGGRGM
DGGREGEFDMEGLEVWGVGGEERIGAAVSAQGHARDLRAEIIAKARKVDK
SKFLDNEFDKEFLLGKTFGHGKREQMGRD*

mRNA from alignment at scaffold_30:211213..213544-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9016 ID=mRNA_9016|Name=jgi.p|Nanoce1779_2|633269|organism=Nannochloropsis oceanica|type=mRNA|length=2332bp|location=Sequence derived from alignment at scaffold_30:211213..213544- (Nannochloropsis oceanica)
GGGGAAGAGGGGGAAGGAGGGGAGGGAGGGAAGGATGAAGGGGCAGCTGA
AGGAGCCGTATCGAATGGAGCGCCTCTTCTCTCCTACACCTGCCTGAAGG
AAGTCATTCGCCTTGCCTACCAATGCCACCTCCTATCCTCTCCCGCTCCT
GTTGTCCCTCCTTCGGGCCCTCCTTCCTCAGCGTCCTCCACCTCTACATC
GCCTCGTCCTCCCACTTCTCCTACTCCTCCTACTCCTACTCCTACTCCTC
CTACTCATGTCCTCACTTTCGATACGACTCTCTTCCACCACCCGCTCATC
CGAGACCATAACATTCCCCCTCCCACCTCCTCCTTCCACCCTGCTATGCC
CTCCTTGCCCTCCTTCGCTTCCTCCCTCACTTCCTCGCCCTCTGAATTCT
CCATCACTGAAGAGGAAGAGCCGGCCGTTTCTTTCGACGAATTTTACGTA
TGGGCCACAGAGTCGTTCCCTCTCCTTTATCAACCCTTTGCTGCATTCAT
GTATTCGCGTCTTTTTGCCAACTGTGAGATGGGTGTCCCCCCCCTGCCCC
TCCCCCCCTCCCTCCGCCTCGCCCTTCCCGAGCTCTTGAGCCGTTCCTAC
ATCCTAAGCTCTGAGCACTCCCTGTTTGGACTGGCCCTTGCTTCGCCCTA
TCTGCAAGGGGCATGGACGAGGCTTTACACGAGTGAGGAGAATGGGCTGA
GTTTTAACAGAATCTGTCATCATATTCTTGGCTACCGAGGTAAGCATTGA
GGGCGGGCATTACACCTTCCTTCCCTCCCTCCCTCCTTCACTCCCTCCTC
GTCTGTCTCCCCCACCTTCCTTCTCTATTTCGTATTTTGCATTCTCTTTC
TTCTTCTTTTCTTTCTTTAGTCAGAGAATGTAACAGAGTCGAGTGTAATC
ATTAATCAGATTCTCTCTCTTTTCTAATCAATCGAAAATACGCTACCCAG
GTCCCACCGTCCTTCTCCTCCGCGACACCACCGGCGCCGTCTTCGGTTTC
TTTACCAACGACACGTGGAAGGAGAGCAACTCCTTCTTCGGCTCCTCAGA
ATGCTTCCTCTTCCGCCTTTCTCCCTCCTTTGTGGAGATACGCCCCAAGG
CTAGCGGGCACGGGCAAGGCGGGGCGAAGCACTATATGTACCTTAATCTG
AAAGGTTTCTCGTTGCCGCATGGACTGGGGGTAGGAGGGAGCATCGATGG
TGGGTTTAGGCTGTGGATCCCGGAGAGTTTGGATGGTTGCGTGGCCGGCA
CTCGGGACGGTACGTTCGAGTGGGGGCCTCTGGGAGGAGGGGGGGGAAGG
GGGATGGATGGAGGGAGGGAGGGCGAGTTTGATATGGAGGGATTGGAGGT
GTGGGGGGTAGGGGGGGAGGAGAGGATTGGGGCAGCGGTAAGTGCGCAGG
GTCATGCGCGGGATCTGCGGGCAGAGATCATTGCGAAAGCTCGCAAGGTG
GACAAGAGCAAATTTCTAGACAACGAATTCGACAAGGAATTTTTGCTGGG
CAAAACCTTTGGACATGGGAAACGGGAGCAAATGGGAAGGGACTGAGGAA
GAAGTAAAGGAAGTCTTGTCCTTCTCTCTCTGTTACACGACAGGCTGCCT
GTCATGTGTGTATATATACATACGAGTTTTTTTTTTCAACTACATAAACG
GGTTGTCGTCCGCGGGGAGGGCACGAGAAAGTCTCTGCCTGTCGTGTCGT
GTACCTTCATCGTGCCTCTCTTCTCTCTCAACGGTTTAGCCTTCTGATAC
AGCATCATATCTGGCGGAAGGGGGAAACATTGTGATACAAGAGCAAATCC
TGCGAAACAAGAGCAAATCATGCACCATAAAAGGTTCCGCGGAGGCGACT
CTGGTGGGACCGACGCAATCGCATGTCTTTTTTTTTCGAATGTACTTGAA
TTCCCCGTCGAGAAATGTCAGCATCCAATTCATCACCATCGAAATCTCTG
TTTTGGGACAAGAACCAGCGCCGAATTCCTTTCTATAATACCCCTCTTCG
TAGGAGACTCTTTTTTTGTCTTGATGGCTCGTATTGAGGGGAGGCGAAAC
GGGAGGCATAGAGGCATGGAAAAGAGAATAGAGAGTTGGCAGACGAAGAA
ACGAGAAAGAAGTAGTCGAGCCTCGAAAAAGTTGCGAAGCACATTCGCCG
CCTCGTGTCACGTGGAGGGAGAAGGGAAAGAAGAGCGACAGTGCGTAAAG
ACAGATTTGACTTTTTGAAAAGTAAGACCAGCACGCACCAAAATACACGT
AGAGCGGGGGAATTAAGACCATTGACAGGCTCCTAGAGCCAAAATGTACA
AAAGAGAAAGAAGTGGAAGAATGAGGAAGAAT

Coding sequence (CDS) from alignment at scaffold_30:211213..213544-

>mRNA_9016 ID=mRNA_9016|Name=jgi.p|Nanoce1779_2|633269|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_30:211213..213544- (Nannochloropsis oceanica)
GTCCCACCGTCCTTCTCCTCCGCGACACCACCGGCGCCGTCTTCGGTTTC
TTTACCAACGACACGTGGAAGGAGAGCAACTCCTTCTTCGGCTCCTCAGA
ATGCTTCCTCTTCCGCCTTTCTCCCTCCTTTGTGGAGATACGCCCCAAGG
CTAGCGGGCACGGGCAAGGCGGGGCGAAGCACTATATGTACCTTAATCTG
AAAGGTTTCTCGTTGCCGCATGGACTGGGGGTAGGAGGGAGCATCGATGG
TGGGTTTAGGCTGTGGATCCCGGAGAGTTTGGATGGTTGCGTGGCCGGCA
CTCGGGACGGTACGTTCGAGTGGGGGCCTCTGGGAGGAGGGGGGGGAAGG
GGGATGGATGGAGGGAGGGAGGGCGAGTTTGATATGGAGGGATTGGAGGT
GTGGGGGGTAGGGGGGGAGGAGAGGATTGGGGCAGCGGTAAGTGCGCAGG
GTCATGCGCGGGATCTGCGGGCAGAGATCATTGCGAAAGCTCGCAAGGTG
GACAAGAGCAAATTTCTAGACAACGAATTCGACAAGGAATTTTTGCTGGG
CAAAACCTTTGGACATGGGAAACGGGAGCAAATGGGAAGGGACTGAATGC
CCTCCTTGCCCTCCTTCGCTTCCTCCCTCACTTCCTCGCCCTCTGAATTC
TCCATCACTGAAGAGGAAGAGCCGGCCGTTTCTTTCGACGAATTTTACGT
ATGGGCCACAGAGTCGTTCCCTCTCCTTTATCAACCCTTTGCTGCATTCA
TGTATTCGCGTCTTTTTGCCAACTGTGAGATGGGTGTCCCCCCCCTGCCC
CTCCCCCCCTCCCTCCGCCTCGCCCTTCCCGAGCTCTTGAGCCGTTCCTA
CATCCTAAGCTCTGAGCACTCCCTGTTTGGACTGGCCCTTGCTTCGCCCT
ATCTGCAAGGGGCATGGACGAGGCTTTACACGAGTGAGGAGAATGGGCTG
AGTTTTAACAGAATCTGTCATCATATTCTTGGCTACCGAGGTCCCACCGT
CCTTCTCCTCCGCGACACCACCGGCGCCGTCTTCGGTTTCTTTACCAACG
ACACGTGGAAGGAGAGCAACTCCTTCTTCGGCTCCTCAGAATGCTTCCTC
TTCCGCCTTTCTCCCTCCTTTGTGGAGATACGCCCCAAGGCTAGCGGGCA
CGGGCAAGGCGGGGCGAAGCACTATATGTACCTTAATCTGAAAGGTTTCT
CGTTGCCGCATGGACTGGGGGTAGGAGGGAGCATCGATGGTGGGTTTAGG
CTGTGGATCCCGGAGAGTTTGGATGGTTGCGTGGCCGGCACTCGGGACGG
TACGTTCGAGTGGGGGCCTCTGGGAGGAGGGGGGGGAAGGGGGATGGATG
GAGGGAGGGAGGGCGAGTTTGATATGGAGGGATTGGAGGTGTGGGGGGTA
GGGGGGGAGGAGAGGATTGGGGCAGCGGTAAGTGCGCAGGGTCATGCGCG
GGATCTGCGGGCAGAGATCATTGCGAAAGCTCGCAAGGTGGACAAGAGCA
AATTTCTAGACAACGAATTCGACAAGGAATTTTTGCTGGGCAAAACCTTT
GGACATGGGAAACGGGAGCAAATGGGAAGGGACTGAATGCCCTCCTTGCC
CTCCTTCGCTTCCTCCCTCACTTCCTCGCCCTCTGAATTCTCCATCACTG
AAGAGGAAGAGCCGGCCGTTTCTTTCGACGAATTTTACGTATGGGCCACA
GAGTCGTTCCCTCTCCTTTATCAACCCTTTGCTGCATTCATGTATTCGCG
TCTTTTTGCCAACTGTGAGATGGGTGTCCCCCCCCTGCCCCTCCCCCCCT
CCCTCCGCCTCGCCCTTCCCGAGCTCTTGAGCCGTTCCTACATCCTAAGC
TCTGAGCACTCCCTGTTTGGACTGGCCCTTGCTTCGCCCTATCTGCAAGG
GGCATGGACGAGGCTTTACACGAGTGAGGAGAATGGGCTGAGTTTTAACA
GAATCTGTCATCATATTCTTGGCTACCGAG

Synonyms

Publications