jgi.p|Nanoce1779_2|605306, mRNA_9641 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605306
Unique Name	mRNA_9641
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2293
Alignment location	scaffold_31:163082..165374 -

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Properties


Property Name	Value
TranscriptId	605392
Track	FilteredModels2
ProteinId	605306

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:163082..165374 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605306	gene_9641	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605306	mRNA_9641-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9641	CDS_9641	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:163082..165374-
coding sequence from alignment at scaffold_31:163082..165374-

mRNA sequence

>mRNA_9641 ID=mRNA_9641|Name=jgi.p|Nanoce1779_2|605306|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
GCGTTGGTGGTTTGTGGAAAGAGAAGAACGCGGAAAATCATCGTTTTAAG
TGCGCGACAGACAGACAGACAAAAATCGATTAATAAATTAGATACTCTAG
GCTTATTATTAAACTTTGAGATTCAGTTGGTCTTCACCAATATGTTGCTG
AATACACCGTGTTCCTCTCCTGCTTATTGGAAGCACATCCAATATGGCAG
AAAATTAATTTTGTCATTGCTCAATCCCAATACACTCACTTTTCAACTGC
AGCAACCAGTATGACACTGAGGACAAGAATTACCAGTGGAGGTATTCTAC
TTGCTCGGCCTTCTTTGACAGCTCTGATTTGTACTCTTATGATTGCAATA
TCCGTGTGGCGCGCGGTCCCCGGAATCGCTAAGGAGTCGAAGACTGCATT
AGCCATTGCAGTTGAAAAGACAGTTCACGAACGGTATTATAATGAGACGT
ACATGGACTGGCAGCTTCCTTTAAATAAAATTGGTGCCATGTATAAGAAA
CGATACTGGCGCGACTATGTCACACATGACATGGCTTGTGCCGAGTTCGG
ATGTTCTACGGGTTTCATTCTTCACTCGATGCCATGTCGTGAGAAGCTGG
GCATTGAGCTAAATGATGCAGCTCGAGATTACGCTCACCAGAAATTTGCA
CTTAACGTAGTGCAAACCACATCGGAGGTCCTGTCTAGCTCACAGGATTT
TATATTGTCAACTTCAGTGTTAGAGCATGCAGAATGTCCCATTTGTGAAC
TTCGACAATTACACAGAATTTTGAAGCCTCATGGCATAATTTCAGTCACT
GTTCCGGGAATGGCTCCTCGCAGTACGGTGTGGAAGCGTGATGATGTGAA
CCTAGAATTCCAAATGTTCGGAGCCTTGGAGCTTGGAAACCTTCTCATCG
CGGCCGGTTTTACTATTCCAGACCCAAATGCCTGCTTTTCAGAGGTTACT
CAGTGGCCACCAGATGCAGAAGATATTTTTATAAAAAATGGATTAGACAC
TTTGATCGAGCGCGCTAAAGAGTATGGACGAACGCACGACAATTTGGTTA
CGACCTGGTGCATCGCATACAAAGAATGATGACCCTATGGGCATCGAGAT
GCCTAAATAAATAGCAACCCCGAATATCAAAGTGAGGGGATATAGCATCC
GTATTTCTGTAAAATAAATGAAACGCAAAAGGTCGAAGCGCTGAGGACAA
TCTCCTCTTTCAGGGACCATCCCTCCATGATTCGCGCCGGAATCGAGTTT
ATTTAAGCCCGATTTACAAAATTAAGGTTGTCCGAGACCGCCTTCAGCTG
ATCACCTTCCTGCTACGCATCACTGCGTATTACTTCATGCAATATCATAG
TTTGTCTCGGCGAGCCCATTCCAGAGTTGTACTGGAAGAATGGCCTGAAC
GACTGTCTAGCATAATTGTAGCCAAAAATCGTCGGTAGTCATGTGAATAT
AATATTCATAGCCGTGCATGTCCATCAGGACGACCTGTAGTCGTCGTAGT
TATGCATGAATGCCTATTTCTTTCCATCGATGTATGGAAGGACAGATGTG
GCTCAAAGAAATTTTATGATATACGAGTGAGGGAAGTAAAGATATGTGGG
AGGCCAATTCTCGGTTACTGGCTCTTCGAGGCTTTGCCCCCTTCGCGGAC
CGCCGCGACAGGAGCCAGATCTCCGCCTTGCTCTTGCTGGGGGTAAGGTC
TTTTCTTAAGGAGTACGACCTTGCTCCCAGAGATTCAATAGGCTCCGTAA
GAGACCATGGCAGGCGATGTGAAGCGGTGCAGCAAGGCTGGGGATTATTT
GGATATGAAACATAAGCGGTGCGGCCCAAATATATAATGAACCGTGCCAT
TGTTGAAGAGGGGGGATATTCAGAGGCAAAGGGGAAAAACACTTTGCTCT
CACCCAGTCCAAAATTCAGTCGTTTCTTCCTTTTTATTCATCCCTGATGG
GTGTTGGCCTCCGAAAGCCCCTAAGGAATGGATAGCAGGGGGGGTATGCC
CCGAAGGCAACACGGAATGCTACACCACTTCCAGATCTCCCTCAACAATT
CTTCAAAAATAGATTTCTCGCGTGCCATTGACGTCTCGATCGCCTTTGCA
CAAACAAGATCATTACTTGAAAAATTTGTTTCCACCCAATTTGGCCGTCA
TAGCCCACCCCCGCTCGAAGGTGGAGCCAAAGGTGATGCGCTTTTCCTGG
ATAGCAGGAACGAATTTCTGCAGGTCTGTCCACTATTCGTTTCCCTCCTC
TATGGTAAGTCCGACGCCACAAGCTCGCACTTATCATATTCCA

protein sequence of jgi.p|Nanoce1779_2|605306

>mRNA_9641-protein ID=mRNA_9641-protein|Name=jgi.p|Nanoce1779_2|605306|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MTLRTRITSGGILLARPSLTALICTLMIAISVWRAVPGIAKESKTALAIA
VEKTVHERYYNETYMDWQLPLNKIGAMYKKRYWRDYVTHDMACAEFGCST
GFILHSMPCREKLGIELNDAARDYAHQKFALNVVQTTSEVLSSSQDFILS
TSVLEHAECPICELRQLHRILKPHGIISVTVPGMAPRSTVWKRDDVNLEF
QMFGALELGNLLIAAGFTIPDPNACFSEVTQWPPDAEDIFIKNGLDTLIE
RAKEYGRTHDNLVTTWCIAYKE*

mRNA from alignment at scaffold_31:163082..165374-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9641 ID=mRNA_9641|Name=jgi.p|Nanoce1779_2|605306|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_31:163082..165374- (Nannochloropsis oceanica)
GCGTTGGTGGTTTGTGGAAAGAGAAGAACGCGGAAAATCATCGTTTTAAG
TGCGCGACAGACAGACAGACAAAAATCGATTAATAAATTAGATACTCTAG
GCTTATTATTAAACTTTGAGATTCAGTTGGTCTTCACCAATATGTTGCTG
AATACACCGTGTTCCTCTCCTGCTTATTGGAAGCACATCCAATATGGCAG
AAAATTAATTTTGTCATTGCTCAATCCCAATACACTCACTTTTCAACTGC
AGCAACCAGTATGACACTGAGGACAAGAATTACCAGTGGAGGTATTCTAC
TTGCTCGGCCTTCTTTGACAGCTCTGATTTGTACTCTTATGATTGCAATA
TCCGTGTGGCGCGCGGTCCCCGGAATCGCTAAGGAGTCGAAGACTGCATT
AGCCATTGCAGTTGAAAAGACAGTTCACGAACGGTATTATAATGAGACGT
ACATGGACTGGCAGCTTCCTTTAAATAAAATTGGTGCCATGTATAAGAAA
CGATACTGGCGCGACTATGTCACACATGACATGGCTTGTGCCGAGTTCGG
ATGTTCTACGGGTTTCATTCTTCACTCGATGCCATGTCGTGAGAAGCTGG
GCATTGAGCTAAATGATGCAGCTCGAGATTACGCTCACCAGAAATTTGCA
CTTAACGTAGTGCAAACCACATCGGAGGTCCTGTCTAGCTCACAGGATTT
TATATTGTCAACTTCAGTGTTAGAGCATGCAGAATGTCCCATTTGTGAAC
TTCGACAATTACACAGAATTTTGAAGCCTCATGGCATAATTTCAGTCACT
GTTCCGGGAATGGCTCCTCGCAGTACGGTGTGGAAGCGTGATGATGTGAA
CCTAGAATTCCAAATGTTCGGAGCCTTGGAGCTTGGAAACCTTCTCATCG
CGGCCGGTTTTACTATTCCAGACCCAAATGCCTGCTTTTCAGAGGTTACT
CAGTGGCCACCAGATGCAGAAGATATTTTTATAAAAAATGGATTAGACAC
TTTGATCGAGCGCGCTAAAGAGTATGGACGAACGCACGACAATTTGGTTA
CGACCTGGTGCATCGCATACAAAGAATGATGACCCTATGGGCATCGAGAT
GCCTAAATAAATAGCAACCCCGAATATCAAAGTGAGGGGATATAGCATCC
GTATTTCTGTAAAATAAATGAAACGCAAAAGGTCGAAGCGCTGAGGACAA
TCTCCTCTTTCAGGGACCATCCCTCCATGATTCGCGCCGGAATCGAGTTT
ATTTAAGCCCGATTTACAAAATTAAGGTTGTCCGAGACCGCCTTCAGCTG
ATCACCTTCCTGCTACGCATCACTGCGTATTACTTCATGCAATATCATAG
TTTGTCTCGGCGAGCCCATTCCAGAGTTGTACTGGAAGAATGGCCTGAAC
GACTGTCTAGCATAATTGTAGCCAAAAATCGTCGGTAGTCATGTGAATAT
AATATTCATAGCCGTGCATGTCCATCAGGACGACCTGTAGTCGTCGTAGT
TATGCATGAATGCCTATTTCTTTCCATCGATGTATGGAAGGACAGATGTG
GCTCAAAGAAATTTTATGATATACGAGTGAGGGAAGTAAAGATATGTGGG
AGGCCAATTCTCGGTTACTGGCTCTTCGAGGCTTTGCCCCCTTCGCGGAC
CGCCGCGACAGGAGCCAGATCTCCGCCTTGCTCTTGCTGGGGGTAAGGTC
TTTTCTTAAGGAGTACGACCTTGCTCCCAGAGATTCAATAGGCTCCGTAA
GAGACCATGGCAGGCGATGTGAAGCGGTGCAGCAAGGCTGGGGATTATTT
GGATATGAAACATAAGCGGTGCGGCCCAAATATATAATGAACCGTGCCAT
TGTTGAAGAGGGGGGATATTCAGAGGCAAAGGGGAAAAACACTTTGCTCT
CACCCAGTCCAAAATTCAGTCGTTTCTTCCTTTTTATTCATCCCTGATGG
GTGTTGGCCTCCGAAAGCCCCTAAGGAATGGATAGCAGGGGGGGTATGCC
CCGAAGGCAACACGGAATGCTACACCACTTCCAGATCTCCCTCAACAATT
CTTCAAAAATAGATTTCTCGCGTGCCATTGACGTCTCGATCGCCTTTGCA
CAAACAAGATCATTACTTGAAAAATTTGTTTCCACCCAATTTGGCCGTCA
TAGCCCACCCCCGCTCGAAGGTGGAGCCAAAGGTGATGCGCTTTTCCTGG
ATAGCAGGAACGAATTTCTGCAGGTCTGTCCACTATTCGTTTCCCTCCTC
TATGGTAAGTCCGACGCCACAAGCTCGCACTTATCATATTCCA

Coding sequence (CDS) from alignment at scaffold_31:163082..165374-

>mRNA_9641 ID=mRNA_9641|Name=jgi.p|Nanoce1779_2|605306|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_31:163082..165374- (Nannochloropsis oceanica)
ATGACACTGAGGACAAGAATTACCAGTGGAGGTATTCTACTTGCTCGGCC
TTCTTTGACAGCTCTGATTTGTACTCTTATGATTGCAATATCCGTGTGGC
GCGCGGTCCCCGGAATCGCTAAGGAGTCGAAGACTGCATTAGCCATTGCA
GTTGAAAAGACAGTTCACGAACGGTATTATAATGAGACGTACATGGACTG
GCAGCTTCCTTTAAATAAAATTGGTGCCATGTATAAGAAACGATACTGGC
GCGACTATGTCACACATGACATGGCTTGTGCCGAGTTCGGATGTTCTACG
GGTTTCATTCTTCACTCGATGCCATGTCGTGAGAAGCTGGGCATTGAGCT
AAATGATGCAGCTCGAGATTACGCTCACCAGAAATTTGCACTTAACGTAG
TGCAAACCACATCGGAGGTCCTGTCTAGCTCACAGGATTTTATATTGTCA
ACTTCAGTGTTAGAGCATGCAGAATGTCCCATTTGTGAACTTCGACAATT
ACACAGAATTTTGAAGCCTCATGGCATAATTTCAGTCACTGTTCCGGGAA
TGGCTCCTCGCAGTACGGTGTGGAAGCGTGATGATGTGAACCTAGAATTC
CAAATGTTCGGAGCCTTGGAGCTTGGAAACCTTCTCATCGCGGCCGGTTT
TACTATTCCAGACCCAAATGCCTGCTTTTCAGAGGTTACTCAGTGGCCAC
CAGATGCAGAAGATATTTTTATAAAAAATGGATTAGACACTTTGATCGAG
CGCGCTAAAGAGTATGGACGAACGCACGACAATTTGGTTACGACCTGGTG
CATCGCATACAAAGAATGA

Synonyms

Publications