jgi.p|Nanoce1779_2|606422, mRNA_9330 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606422
Unique NamemRNA_9330
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length584
Alignment locationscaffold_35:102759..103342 -

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Properties
Property NameValue
TranscriptId606508
TrackFilteredModels2
ProteinId606422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:102759..103342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606422gene_9330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606422mRNA_9330-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9330CDS_9330Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9330 ID=mRNA_9330|Name=jgi.p|Nanoce1779_2|606422|organism=Nannochloropsis oceanica|type=mRNA|length=584bp
AGACACAGCATGGAAAGGGACGACGACGACGACATTGAAGGGCAGCTGAA
CCCCTTCAACAATGTGCCATCCGCCGCTGGCGGGCCTGTCTCCCTCCCTC
TATTGCCTCCCCCGGAGGAGCAGCAACGTGTGCTCCACGACGCAGGCTAC
AGAGACGGGGCATCTGCAGGACATGCCTTGGGCTTGCAAGAAGGATTTGA
CGAAGGATTCGGCGAGGGCATCAAGGCGGGAGAGGCGCTAGGACGGCTGT
TGGGCGCGGCGAGGTAAAGCAGGAAGGATGGAGAGGGTGTAGGGGCAAGT
GAGGGGAGTGTGAATGAAACGCCTCCGTCCCTTCGTTCACGTCATGTACA
TTCCTCCCTCCCTTCTCATTTCGTTATCACATAGTGCCCTGCAGGCCCTT
GGGGACAGGCAGCCGTCGGGCCTACCCTTGGCTACAGAGAAGGAAAGGGA
GGGAGTGAAAAGGGAAGCGATGGCAGTGGCATGTGCATTAACTGAGCGAG
CCAGGCATCCAGAAGTACTCGAGGAAGGGGGGGAGGGAGGGGAAGGGGGA
GTAGAAGCGGTGGGGAAGACGGAGAAGGAGCAAG
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protein sequence of jgi.p|Nanoce1779_2|606422

>mRNA_9330-protein ID=mRNA_9330-protein|Name=jgi.p|Nanoce1779_2|606422|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MERDDDDDIEGQLNPFNNVPSAAGGPVSLPLLPPPEEQQRVLHDAGYRDG
ASAGHALGLQEGFDEGFGEGIKAGEALGRLLGAAR*
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mRNA from alignment at scaffold_35:102759..103342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9330 ID=mRNA_9330|Name=jgi.p|Nanoce1779_2|606422|organism=Nannochloropsis oceanica|type=mRNA|length=584bp|location=Sequence derived from alignment at scaffold_35:102759..103342- (Nannochloropsis oceanica)
AGACACAGCATGGAAAGGGACGACGACGACGACATTGAAGGGCAGCTGAA
CCCCTTCAACAATGTGCCATCCGCCGCTGGCGGGCCTGTCTCCCTCCCTC
TATTGCCTCCCCCGGAGGAGCAGCAACGTGTGCTCCACGACGCAGGCTAC
AGAGACGGGGCATCTGCAGGACATGCCTTGGGCTTGCAAGAAGGATTTGA
CGAAGGATTCGGCGAGGGCATCAAGGCGGGAGAGGCGCTAGGACGGCTGT
TGGGCGCGGCGAGGTAAAGCAGGAAGGATGGAGAGGGTGTAGGGGCAAGT
GAGGGGAGTGTGAATGAAACGCCTCCGTCCCTTCGTTCACGTCATGTACA
TTCCTCCCTCCCTTCTCATTTCGTTATCACATAGTGCCCTGCAGGCCCTT
GGGGACAGGCAGCCGTCGGGCCTACCCTTGGCTACAGAGAAGGAAAGGGA
GGGAGTGAAAAGGGAAGCGATGGCAGTGGCATGTGCATTAACTGAGCGAG
CCAGGCATCCAGAAGTACTCGAGGAAGGGGGGGAGGGAGGGGAAGGGGGA
GTAGAAGCGGTGGGGAAGACGGAGAAGGAGCAAG
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Coding sequence (CDS) from alignment at scaffold_35:102759..103342-

>mRNA_9330 ID=mRNA_9330|Name=jgi.p|Nanoce1779_2|606422|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_35:102759..103342- (Nannochloropsis oceanica)
ATGGAAAGGGACGACGACGACGACATTGAAGGGCAGCTGAACCCCTTCAA
CAATGTGCCATCCGCCGCTGGCGGGCCTGTCTCCCTCCCTCTATTGCCTC
CCCCGGAGGAGCAGCAACGTGTGCTCCACGACGCAGGCTACAGAGACGGG
GCATCTGCAGGACATGCCTTGGGCTTGCAAGAAGGATTTGACGAAGGATT
CGGCGAGGGCATCAAGGCGGGAGAGGCGCTAGGACGGCTGTTGGGCGCGG
CGAGGTAA
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Synonyms
Publications