jgi.p|Nanoce1779_2|606984, mRNA_9738 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606984
Unique NamemRNA_9738
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length769
Alignment locationscaffold_37:68522..69943 +

Link to JBrowse

Properties
Property NameValue
TranscriptId607070
TrackFilteredModels2
ProteinId606984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:68522..69943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606984gene_9738Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606984mRNA_9738-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9738CDS_9738Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9738 ID=mRNA_9738|Name=jgi.p|Nanoce1779_2|606984|organism=Nannochloropsis oceanica|type=mRNA|length=769bp
AACAGGTTGGAAAGAACGAGGGTGAGCCAAATAAAACCTCCCCACTATCT
AGATCTCAGGAGATAAGCACATCCCCCAGTGTCCCCCCCTCGCTCCTAAG
CCTCCGCCTTGAACCAACAAGACGATGCGGCAACTTAAGCACCACGAACA
AAAGCTCCTGAAGAAAGTTGATTTTTTGCAATGGAAGAGCGACCAGAACA
TCCGCGAGGTCAAGGTTTTGCGTCGGTATCACATCCAGGACCGGGAAGAC
TACGTCAAGTATAATAAGATCTGCGGCCACATCACCAAACTGACGTCTAA
GCTAAAAGGCCTCAAGCCCGAGGATGAATTTCGGATCAAGATGACGGACG
ATCTCCTGACCAAGCTCTACAATATGGGCCTGATTCCTACCAAGAAATCT
TTGATTCAATGCGAGACACTTGCTGCGTCTTCCTTCTGTCGGCGTCGGCT
GCCGGTGGTGATGGTACGGGTAAAAATGGCCGAGACGTTGAAGGAGGCGA
TAACCTTTATCGAGCAGGGACAAGTGCGCGTCGGGCCAACAGTCGTCTCC
GACCCGGCCTTCCTAGTCAGCCGGAGCCACGAGGACTTCTTGACGTGGGT
GGACAGTTCGAAGATCAAACGCGCCGTCATGAAGTACAACGACAAGCTCG
ACGATTTTGACCTCCTCGGAAATTAATTAGGCTGCCTCCTTCTTCCTTTT
CCTGTTGTAATGCGGGCGGGGATTTGAAAGACACGTGTACATGAAGTAAC
AAAATGAAAATATTTAAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|606984

>mRNA_9738-protein ID=mRNA_9738-protein|Name=jgi.p|Nanoce1779_2|606984|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MRQLKHHEQKLLKKVDFLQWKSDQNIREVKVLRRYHIQDREDYVKYNKIC
GHITKLTSKLKGLKPEDEFRIKMTDDLLTKLYNMGLIPTKKSLIQCETLA
ASSFCRRRLPVVMVRVKMAETLKEAITFIEQGQVRVGPTVVSDPAFLVSR
SHEDFLTWVDSSKIKRAVMKYNDKLDDFDLLGN*
back to top

mRNA from alignment at scaffold_37:68522..69943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9738 ID=mRNA_9738|Name=jgi.p|Nanoce1779_2|606984|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp|location=Sequence derived from alignment at scaffold_37:68522..69943+ (Nannochloropsis oceanica)
AACAGGTTGGAAAGAACGAGGGTGAGCCAAATAAAACCTCCCCACTATCT
AGATCTCAGGAGATAAGCACATCCCCCAGTGTCCCCCCCTCGCTCCTAAG
CCTCCGCCTTGAACCAACAAGACGATGCGGCAACTTAAGCACCACGAACA
AAAGCTCCTGAAGAAAGTTGATTTTTTGCAATGGAAGAGCGACCAGAACA
TCCGCGAGGTCAAGGTTTTGCGTCGGTATCACATCCAGGACCGGGAAGAC
TACGTCAAGTAAGTGCAGGGGCGAGGAGGGAGGCAAGAAAATAGACAAAG
AGGAGAGGTATATGTTAAATGACTCAGTGGGTGGCTATGTGTAGCTGTGG
ACGTCTGTTTGCTAGGCTCTGTCGTAGTGCGGTTTCCTTCGCAAGTCTCG
TCCTTCCCCGTCACAGTCCCTTACATCCTCCCGCGCTCTCTCCCTTTTTC
CTTTCAGGTATAATAAGATCTGCGGCCACATCACCAAACTGACGTCTAAG
CTAAAAGGCCTCAAGCCCGAGGATGAATTTCGGATCAAGATGACGGACGA
TGTATGAAGGGATGGAGGGAGGGAGGGATGGAAAGAGGGCAACAAAGATT
CCATTGGCAAACGGGGTAGACAAAGGGACTCCCACAGCGGCACAAAGCGT
CGATAGACGTCAGAGGACAGATAATAAAATAGTGAACAACAAAGAAGAGA
ATGAATAATTTACTCTCTCTCACCATACCCACCCATCCACCTTCAAAATC
CAGCTCCTGACCAAGCTCTACAATATGGGCCTGATTCCTACCAAGAAATC
TTTGATTCAATGCGAGACACTTGCTGCGTCTTCCTTCTGTCGGCGTCGGC
TGCCGGTGGTGATGGTACGGGTAAAAATGGCCGAGACGTTGAAGGAGGCG
ATAACCTTTATCGAGCAGGGACAAGTGCGCGTCGGGCCAACAGGTGGGTG
TTGGTAGAGAGGTCTGTCTATGAGAGTTATGGATGTGCCTTAGATGATAT
CGTCTTTCCTTTGCATCATGCTCTTATTAATCTCGCACACTCCTCTTCCC
TACCCTTCCCTTCTCTCGTTTCAAAGGATCTCTTGCTTCTCTCACATCTT
CACAGAGCCATTCACCTCATATTCCTCCTTCCCTACCTTCCTCCCTTCCT
TCCTTCCTTCCTCTCTTTCTCACAACCATCCCTCCCCCTTCCTAGTCGTC
TCCGACCCGGCCTTCCTAGTCAGCCGGAGCCACGAGGACTTCTTGACGTG
GGTGGACAGTTCGAAGATCAAACGCGCCGTCATGAAGTACAACGACAAGC
TCGACGATTTTGACCTCCTCGGAAATTAATTAGGCTGCCTCCTTCTTCCT
TTTCCTGTTGTAATGCGGGCGGGGATTTGAAAGACACGTGTACATGAAGT
AACAAAATGAAAATATTTAAGC
back to top

Coding sequence (CDS) from alignment at scaffold_37:68522..69943+

>mRNA_9738 ID=mRNA_9738|Name=jgi.p|Nanoce1779_2|606984|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_37:68522..69943+ (Nannochloropsis oceanica)
ATGCGGCAACTTAAGCACCACGAACAAAAGCTCCTGAAGAAAGTTGATTT
TTTGCAATGGAAGAGCGACCAGAACATCCGCGAGGTCAAGGTTTTGCGTC
GGTATCACATCCAGGACCGGGAAGACTACGTCAAGTATAATAAGATCTGC
GGCCACATCACCAAACTGACGTCTAAGCTAAAAGGCCTCAAGCCCGAGGA
TGAATTTCGGATCAAGATGACGGACGATCTCCTGACCAAGCTCTACAATA
TGGGCCTGATTCCTACCAAGAAATCTTTGATTCAATGCGAGACACTTGCT
GCGTCTTCCTTCTGTCGGCGTCGGCTGCCGGTGGTGATGGTACGGGTAAA
AATGGCCGAGACGTTGAAGGAGGCGATAACCTTTATCGAGCAGGGACAAG
TGCGCGTCGGGCCAACAGTCGTCTCCGACCCGGCCTTCCTAGTCAGCCGG
AGCCACGAGGACTTCTTGACGTGGGTGGACAGTTCGAAGATCAAACGCGC
CGTCATGAAGTACAACGACAAGCTCGACGATTTTGACCTCCTCGGAAATT
AAATGCGGCAACTTAAGCACCACGAACAAAAGCTCCTGAAGAAAGTTGAT
TTTTTGCAATGGAAGAGCGACCAGAACATCCGCGAGGTCAAGGTTTTGCG
TCGGTATCACATCCAGGACCGGGAAGACTACGTCAAGTATAATAAGATCT
GCGGCCACATCACCAAACTGACGTCTAAGCTAAAAGGCCTCAAGCCCGAG
GATGAATTTCGGATCAAGATGACGGACGATCTCCTGACCAAGCTCTACAA
TATGGGCCTGATTCCTACCAAGAAATCTTTGATTCAATGCGAGACACTTG
CTGCGTCTTCCTTCTGTCGGCGTCGGCTGCCGGTGGTGATGGTACGGGTA
AAAATGGCCGAGACGTTGAAGGAGGCGATAACCTTTATCGAGCAGGGACA
AGTGCGCGTCGGGCCAACAGTCGTCTCCGACCCGGCCTTCCTAGTCAGCC
GGAGCCACGAGGACTTCTTGACGTGGGTGGACAGTTCGAAGATCAAACGC
GCCGTCATGAAGTACAACGACAAGCTCGACGATTTTGACCTCCTCGGAAA
TTAAATGCGGCAACTTAAGCACCACGAACAAAAGCTCCTGAAGAAAGTTG
ATTTTTTGCAATGGAAGAGCGACCAGAACATCCGCGAGGTCAAGGTTTTG
CGTCGGTATCACATCCAGGACCGGGAAGACTACGTCAAGTATAATAAGAT
CTGCGGCCACATCACCAAACTGACGTCTAAGCTAAAAGGCCTCAAGCCCG
AGGATGAATTTCGGATCAAGATGACGGACGATCTCCTGACCAAGCTCTAC
AATATGGGCCTGATTCCTACCAAGAAATCTTTGATTCAATGCGAGACACT
TGCTGCGTCTTCCTTCTGTCGGCGTCGGCTGCCGGTGGTGATGGTACGGG
TAAAAATGGCCGAGACGTTGAAGGAGGCGATAACCTTTATCGAGCAGGGA
CAAGTGCGCGTCGGGCCAACAGTCGTCTCCGACCCGGCCTTCCTAGTCAG
CCGGAGCCACGAGGACTTCTTGACGTGGGTGGACAGTTCGAAGATCAAAC
GCGCCGTCATGAAGTACAACGACAAGCTCGACGATTTTGACCTCCTCGGA
AATTAAATGCGGCAACTTAAGCACCACGAACAAAAGCTCCTGAAGAAAGT
TGATTTTTTGCAATGGAAGAGCGACCAGAACATCCGCGAGGTCAAGGTTT
TGCGTCGGTATCACATCCAGGACCGGGAAGACTACGTCAAGTATAATAAG
ATCTGCGGCCACATCACCAAACTGACGTCTAAGCTAAAAGGCCTCAAGCC
CGAGGATGAATTTCGGATCAAGATGACGGACGATCTCCTGACCAAGCTCT
ACAATATGGGCCTGATTCCTACCAAGAAATCTTTGATTCAATGCGAGACA
CTTGCTGCGTCTTCCTTCTGTCGGCGTCGGCTGCCGGTGGTGATGGTACG
GGTAAAAATGGCCGAGACGTTGAAGGAGGCGATAACCTTTATCGAGCAGG
GACAAGTGCGCGTCGGGCCAACAGTCGTCTCCGACCCGGCCTTCCTAGTC
AGCCGGAGCCACGAGGACTTCTTGACGTGGGTGGACAGTTCGAAGATCAA
ACGCGCCGTCATGAAGTACAACGACAAGCTCGACGATTTTGACCTCCTCG
GAAATTAA
back to top
Synonyms
Publications