jgi.p|Nanoce1779_2|642666, mRNA_9667 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642666
Unique NamemRNA_9667
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length201
Alignment locationscaffold_38:34967..35632 +

Link to JBrowse

Properties
Property NameValue
TranscriptId642752
TrackFilteredModels2
ProteinId642666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:34967..35632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642666gene_9667Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642666mRNA_9667-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9667CDS_9667Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9667 ID=mRNA_9667|Name=jgi.p|Nanoce1779_2|642666|organism=Nannochloropsis oceanica|type=mRNA|length=201bp
ATGTCTATCGTGAACCTGGGCGGGGGCATGAATGGAGCCAATTCACGAAC
GGCGATGATGATACAATACAACCTGAGCCATGTGGAGTCGCAGGCCAGGG
CCGGGGCCGTGACCGAGGCCGAGGCCGGGGCAGGGCCCGCCCGCCATTTG
TTGCAAAAGAGGGTGGGGGAGCCTAAACAGATTGCCGGATACACCACCTA
A
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protein sequence of jgi.p|Nanoce1779_2|642666

>mRNA_9667-protein ID=mRNA_9667-protein|Name=jgi.p|Nanoce1779_2|642666|organism=Nannochloropsis oceanica|type=polypeptide|length=67bp
MSIVNLGGGMNGANSRTAMMIQYNLSHVESQARAGAVTEAEAGAGPARHL
LQKRVGEPKQIAGYTT*
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mRNA from alignment at scaffold_38:34967..35632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9667 ID=mRNA_9667|Name=jgi.p|Nanoce1779_2|642666|organism=Nannochloropsis oceanica|type=mRNA|length=666bp|location=Sequence derived from alignment at scaffold_38:34967..35632+ (Nannochloropsis oceanica)
ATGTCTATCGTGAACCTGGGCGGGGGCATGAATGGAGGTGAAGACGACGC
TAACGGCCATGTTAGTGGTAACGAGCAAAACGAGAACGATGCGCAGCAGT
TGGGTCGTGGTTGCCGTCTTCGACGCACCACATTTTGGCAGCCAATTCAC
GAACGGCGATGATGATACAATACAACCTGAGCCATGTGGAGTCGCAGGCC
AGGGCCGGGGCCGTGACCGAGGCCGAGGCCGGGGCAGGGCCCGCCCGCGT
AACAATTCTGTGCGGAGGCCACGCAACCAAGTCGAACGCGAAGCTGACAG
ACAGGGCTGATTACGCCGGCGCTTGAACCCCGAAGTGCGGGCAGTGGAGC
GCGCATCTGACCAAACAAGCCCGTCGAGAGCGGCGCAAACAGCCAGAGGT
CCAGGCAGCCGAGCACGCAGCTGACCAGCAAGCCCGTCGAGAGCGGCGCG
AACAGCACCTAACGCGCGAGCACCGTGCCCACGAACAAACTCATATTCCT
GGAGGCTAACAACCAAATCGCTCGGATGCACGAGTGGCTTGCCAGCACTG
CAGCTCCTTGAGTTGGCCTGATGAGGCCGTGGATCGTAACCCCGCCGGCT
TTCTTTTAGCATTTGTTGCAAAAGAGGGTGGGGGAGCCTAAACAGATTGC
CGGATACACCACCTAA
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Coding sequence (CDS) from alignment at scaffold_38:34967..35632+

>mRNA_9667 ID=mRNA_9667|Name=jgi.p|Nanoce1779_2|642666|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_38:34967..35632+ (Nannochloropsis oceanica)
ATGTCTATCGTGAACCTGGGCGGGGGCATGAATGGAGCCAATTCACGAAC
GGCGATGATGATACAATACAACCTGAGCCATGTGGAGTCGCAGGCCAGGG
CCGGGGCCGTGACCGAGGCCGAGGCCGGGGCAGGGCCCGCCCGCCATTTG
TTGCAAAAGAGGGTGGGGGAGCCTAAACAGATTGCCGGATACACCACCTA
AATGTCTATCGTGAACCTGGGCGGGGGCATGAATGGAGCCAATTCACGAA
CGGCGATGATGATACAATACAACCTGAGCCATGTGGAGTCGCAGGCCAGG
GCCGGGGCCGTGACCGAGGCCGAGGCCGGGGCAGGGCCCGCCCGCCATTT
GTTGCAAAAGAGGGTGGGGGAGCCTAAACAGATTGCCGGATACACCACCT
AAATGTCTATCGTGAACCTGGGCGGGGGCATGAATGGAGCCAATTCACGA
ACGGCGATGATGATACAATACAACCTGAGCCATGTGGAGTCGCAGGCCAG
GGCCGGGGCCGTGACCGAGGCCGAGGCCGGGGCAGGGCCCGCCCGCCATT
TGTTGCAAAAGAGGGTGGGGGAGCCTAAACAGATTGCCGGATACACCACC
TAA
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Synonyms
Publications