jgi.p|Nanoce1779_2|281191, mRNA_9708 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|281191
Unique Name	mRNA_9708
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	857
Alignment location	scaffold_38:190343..191199 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	281277
Track	FilteredModels2
ProteinId	281191

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:190343..191199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|281191	gene_9708	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|281191	mRNA_9708-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9708	CDS_9708	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:190343..191199+
coding sequence from alignment at scaffold_38:190343..191199+

mRNA sequence

>mRNA_9708 ID=mRNA_9708|Name=jgi.p|Nanoce1779_2|281191|organism=Nannochloropsis oceanica|type=mRNA|length=857bp
GGCACCACAATAGCACACTCGCTTGTTCATTAATGCATGATAGTTATGTA
CATCCATCCATGGTCCAATTACACCCCCACGCATAAATGCGTACATTAGA
TATCATATATTCCTAATGTGGCGTTACTATCGTTTTATTTGTTCTAATTG
TTATTGTATTACCATTAAGGTGTGGCGTGCTCTTGCCCGGTGCGACAACC
TATGCGGGCGCCTGCTGGGCCAGGCCGTGTCGGGGGAGGGGGGTGGGTGT
CAGAGAGTGGCTGTGCTGCCTCGTCACCTTCGGACCTGGACAGGAGGTAC
AGAGGAAGGGAGGGGGGAAGGGAGGGAGGGGCAGCGAGACACAGAGAGGG
CTATTTGCGTTTTCGAAGGGAGAGGAGGGCAGCAGGAGATAAATTTTCCC
TTCATCTCCTTCATTCTTATTCTACTCCTATACATCTGTGTGTGCATGTG
TGTGTGGGTCTCTCTCTCTCTCTCTCTCTTTCTATATATATATATATATA
TATATATATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGACTATACACATATTTTTATCTATTTCTATT
TACGTCTGTATGTAAAGGGGTACATGCAAGCATAAGCAGGATTTACGTAC
TAACACCATCTAATTCAATGGACTTACACCTAATGTAATGGACTTACACC
TTATGTAAAGGACTCACACCTAATCCAATGGACTCACGCCTTATCGGTCT
CACGACT

protein sequence of jgi.p|Nanoce1779_2|281191

>mRNA_9708-protein ID=mRNA_9708-protein|Name=jgi.p|Nanoce1779_2|281191|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MWRYYRFICSNCYCITIKVWRALARCDNLCGRLLGQAVSGEGGGCQRVAV
LPRHLRTWTGGTEEGRGEGREGQRDTERAICVFEGRGGQQEINFPFISFI
LILLLYICVCMCVWVSLSLSLFLYIYIYIYICICVCVCVCVCVCVCVCVC
VCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVCVTIHIFLSISIYVCM*

mRNA from alignment at scaffold_38:190343..191199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9708 ID=mRNA_9708|Name=jgi.p|Nanoce1779_2|281191|organism=Nannochloropsis oceanica|type=mRNA|length=857bp|location=Sequence derived from alignment at scaffold_38:190343..191199+ (Nannochloropsis oceanica)
GGCACCACAATAGCACACTCGCTTGTTCATTAATGCATGATAGTTATGTA
CATCCATCCATGGTCCAATTACACCCCCACGCATAAATGCGTACATTAGA
TATCATATATTCCTAATGTGGCGTTACTATCGTTTTATTTGTTCTAATTG
TTATTGTATTACCATTAAGGTGTGGCGTGCTCTTGCCCGGTGCGACAACC
TATGCGGGCGCCTGCTGGGCCAGGCCGTGTCGGGGGAGGGGGGTGGGTGT
CAGAGAGTGGCTGTGCTGCCTCGTCACCTTCGGACCTGGACAGGAGGTAC
AGAGGAAGGGAGGGGGGAAGGGAGGGAGGGGCAGCGAGACACAGAGAGGG
CTATTTGCGTTTTCGAAGGGAGAGGAGGGCAGCAGGAGATAAATTTTCCC
TTCATCTCCTTCATTCTTATTCTACTCCTATACATCTGTGTGTGCATGTG
TGTGTGGGTCTCTCTCTCTCTCTCTCTCTTTCTATATATATATATATATA
TATATATATGTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGACTATACACATATTTTTATCTATTTCTATT
TACGTCTGTATGTAAAGGGGTACATGCAAGCATAAGCAGGATTTACGTAC
TAACACCATCTAATTCAATGGACTTACACCTAATGTAATGGACTTACACC
TTATGTAAAGGACTCACACCTAATCCAATGGACTCACGCCTTATCGGTCT
CACGACT

Coding sequence (CDS) from alignment at scaffold_38:190343..191199+

>mRNA_9708 ID=mRNA_9708|Name=jgi.p|Nanoce1779_2|281191|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_38:190343..191199+ (Nannochloropsis oceanica)
ATGTGGCGTTACTATCGTTTTATTTGTTCTAATTGTTATTGTATTACCAT
TAAGGTGTGGCGTGCTCTTGCCCGGTGCGACAACCTATGCGGGCGCCTGC
TGGGCCAGGCCGTGTCGGGGGAGGGGGGTGGGTGTCAGAGAGTGGCTGTG
CTGCCTCGTCACCTTCGGACCTGGACAGGAGGTACAGAGGAAGGGAGGGG
GGAAGGGAGGGAGGGGCAGCGAGACACAGAGAGGGCTATTTGCGTTTTCG
AAGGGAGAGGAGGGCAGCAGGAGATAAATTTTCCCTTCATCTCCTTCATT
CTTATTCTACTCCTATACATCTGTGTGTGCATGTGTGTGTGGGTCTCTCT
CTCTCTCTCTCTCTTTCTATATATATATATATATATATATATATGTATAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGACTATACACATATTTTTATCTATTTCTATTTACGTCTGTATGTAA

Synonyms

Publications