jgi.p|Nanoce1779_2|524309, mRNA_2016 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524309
Unique Name	mRNA_2016
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1842
Alignment location	scaffold_4:570516..572357 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524395
Track	FilteredModels2
ProteinId	524309

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:570516..572357 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524309	gene_2016	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524309	mRNA_2016-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2016	CDS_2016	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:570516..572357+
coding sequence from alignment at scaffold_4:570516..572357+

mRNA sequence

>mRNA_2016 ID=mRNA_2016|Name=jgi.p|Nanoce1779_2|524309|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
ATGGCAACCCGCACCGCATCACCATCGCCTGCGGCAGCTGCTGCCAAGGC
ATATACTGCTTCTCGCTCCAACAATACCACTGCGCCTCCTCGCGCTGTGC
TTGCCAACCCTGCTCTTCTGGCCCTCCCACGCCACATTCCACCAGCTGGC
CAGGTCGGTCTAGGGCACAAAGGTGTCCCCATTAACCAGCTGCCGGAGGA
GGCATGGGGCCACGTGCCTTTGTGTCGAACGCGGGGCCAAGTCTGCGTGG
CAGGCCTGAAACGCAAATTAGCAGAGGGCGGTCCCAAGCTGTGGCAAGAG
GAAGAAGCCCGAAAGAGTAACGTGGGCGTGATCCGCCCCAGCCACGACGC
CTGGGGAATAGGAAAGATTGTCTTTGTCTACTGCGATGATTTTCTACGAC
GGTGCTTCGAGATGCCATGGATGCACGATCCTGAGTGGCGCGCGCTCCTA
CTCCCCATCTTCGATGCCCTCGGCGTGCCCCCCCACAAAATCGTCCGTTG
CCTCCTTGCGTCCATGCCTCCCGGGATCGCCATTCCTCCACATCATGACA
CGGGCTACTGGGTGCATTACACCCATCGGATTCACCTTCCCGTTATCACC
GACCCTGCCCACATCGCCTTTCGTGTCGGCCCCTCCGATGCGCATCTTCA
ACGCTTCGACCTGGCTGAAGGCCACCTCATCGAGCTTAACAACCAGGCGA
AACACAGCGTGGACAACTGCTGGGGGCAACACCGGGTACACTTAATAATG
GACTACATCGAAGGAAATTCGGTAAGTATCGAACGTACCCTCCTTTCGCC
CGGCACTAAGATCAACCAAACCCGCCGCTCAATCGACCTGGAGTCGGAAC
GAGGAATACGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGT
GGAACCACGTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAG
GGCAAGGCGGAGGGAGACTCATTACCTGGATTGGCGGTGGCGGAGGGAGG
AAGGGTTGACTTGGCGGGAGCACCGGGACACGTATCACAAGTTCTTCCAC
AAGGCCATATTGGATGAAAACCCGTCGTGTCTTACTGGAGAATCGACGCC
AAGCTATATGCTGCATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGG
CGCCCGAGGCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCC
TACAGTCAGTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAA
AAAAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCG
AGAAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACG
TACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGG
CAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGT
GGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACC
GAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTT
TGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGA
ATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCA
GCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACC
GAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCA
ATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACA
AATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA

protein sequence of jgi.p|Nanoce1779_2|524309

>mRNA_2016-protein ID=mRNA_2016-protein|Name=jgi.p|Nanoce1779_2|524309|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp
MATRTASPSPAAAAAKAYTASRSNNTTAPPRAVLANPALLALPRHIPPAG
QVGLGHKGVPINQLPEEAWGHVPLCRTRGQVCVAGLKRKLAEGGPKLWQE
EEARKSNVGVIRPSHDAWGIGKIVFVYCDDFLRRCFEMPWMHDPEWRALL
LPIFDALGVPPHKIVRCLLASMPPGIAIPPHHDTGYWVHYTHRIHLPVIT
DPAHIAFRVGPSDAHLQRFDLAEGHLIELNNQAKHSVDNCWGQHRVHLIM
DYIEGNSVSIERTLLSPGTKINQTRRSIDLESERGIRPCPSYIIIGAQKC
GTTSLYEYLCQHPLVLRARRRETHYLDWRWRREEGLTWREHRDTYHKFFH
KAILDENPSCLTGESTPSYMLHSDVVVPRVRELAPEAKMLVMLRCPVARA
YSQYQMVIDPDGTPEQKKARGTLWKGKSFEEVVEKELEELEACGVTPDMT
YEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFT
EEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKNTRQYEQLDEKMQARLA
AFYAPFNDKLFEMLARPRGMAGWAGMKEEGGVRNGQVLSVDEAKSEQLRT
NVRTEQNMRRKRE*

mRNA from alignment at scaffold_4:570516..572357+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2016 ID=mRNA_2016|Name=jgi.p|Nanoce1779_2|524309|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp|location=Sequence derived from alignment at scaffold_4:570516..572357+ (Nannochloropsis oceanica)
ATGGCAACCCGCACCGCATCACCATCGCCTGCGGCAGCTGCTGCCAAGGC
ATATACTGCTTCTCGCTCCAACAATACCACTGCGCCTCCTCGCGCTGTGC
TTGCCAACCCTGCTCTTCTGGCCCTCCCACGCCACATTCCACCAGCTGGC
CAGGTCGGTCTAGGGCACAAAGGTGTCCCCATTAACCAGCTGCCGGAGGA
GGCATGGGGCCACGTGCCTTTGTGTCGAACGCGGGGCCAAGTCTGCGTGG
CAGGCCTGAAACGCAAATTAGCAGAGGGCGGTCCCAAGCTGTGGCAAGAG
GAAGAAGCCCGAAAGAGTAACGTGGGCGTGATCCGCCCCAGCCACGACGC
CTGGGGAATAGGAAAGATTGTCTTTGTCTACTGCGATGATTTTCTACGAC
GGTGCTTCGAGATGCCATGGATGCACGATCCTGAGTGGCGCGCGCTCCTA
CTCCCCATCTTCGATGCCCTCGGCGTGCCCCCCCACAAAATCGTCCGTTG
CCTCCTTGCGTCCATGCCTCCCGGGATCGCCATTCCTCCACATCATGACA
CGGGCTACTGGGTGCATTACACCCATCGGATTCACCTTCCCGTTATCACC
GACCCTGCCCACATCGCCTTTCGTGTCGGCCCCTCCGATGCGCATCTTCA
ACGCTTCGACCTGGCTGAAGGCCACCTCATCGAGCTTAACAACCAGGCGA
AACACAGCGTGGACAACTGCTGGGGGCAACACCGGGTACACTTAATAATG
GACTACATCGAAGGAAATTCGGTAAGTATCGAACGTACCCTCCTTTCGCC
CGGCACTAAGATCAACCAAACCCGCCGCTCAATCGACCTGGAGTCGGAAC
GAGGAATACGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGT
GGAACCACGTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAG
GGCAAGGCGGAGGGAGACTCATTACCTGGATTGGCGGTGGCGGAGGGAGG
AAGGGTTGACTTGGCGGGAGCACCGGGACACGTATCACAAGTTCTTCCAC
AAGGCCATATTGGATGAAAACCCGTCGTGTCTTACTGGAGAATCGACGCC
AAGCTATATGCTGCATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGG
CGCCCGAGGCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCC
TACAGTCAGTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAA
AAAAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCG
AGAAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACG
TACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGG
CAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGT
GGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACC
GAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTT
TGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGA
ATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCA
GCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACC
GAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCA
ATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACA
AATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA

Coding sequence (CDS) from alignment at scaffold_4:570516..572357+

>mRNA_2016 ID=mRNA_2016|Name=jgi.p|Nanoce1779_2|524309|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_4:570516..572357+ (Nannochloropsis oceanica)
ATGGCAACCCGCACCGCATCACCATCGCCTGCGGCAGCTGCTGCCAAGGC
ATATACTGCTTCTCGCTCCAACAATACCACTGCGCCTCCTCGCGCTGTGC
TTGCCAACCCTGCTCTTCTGGCCCTCCCACGCCACATTCCACCAGCTGGC
CAGGTCGGTCTAGGGCACAAAGGTGTCCCCATTAACCAGCTGCCGGAGGA
GGCATGGGGCCACGTGCCTTTGTGTCGAACGCGGGGCCAAGTCTGCGTGG
CAGGCCTGAAACGCAAATTAGCAGAGGGCGGTCCCAAGCTGTGGCAAGAG
GAAGAAGCCCGAAAGAGTAACGTGGGCGTGATCCGCCCCAGCCACGACGC
CTGGGGAATAGGAAAGATTGTCTTTGTCTACTGCGATGATTTTCTACGAC
GGTGCTTCGAGATGCCATGGATGCACGATCCTGAGTGGCGCGCGCTCCTA
CTCCCCATCTTCGATGCCCTCGGCGTGCCCCCCCACAAAATCGTCCGTTG
CCTCCTTGCGTCCATGCCTCCCGGGATCGCCATTCCTCCACATCATGACA
CGGGCTACTGGGTGCATTACACCCATCGGATTCACCTTCCCGTTATCACC
GACCCTGCCCACATCGCCTTTCGTGTCGGCCCCTCCGATGCGCATCTTCA
ACGCTTCGACCTGGCTGAAGGCCACCTCATCGAGCTTAACAACCAGGCGA
AACACAGCGTGGACAACTGCTGGGGGCAACACCGGGTACACTTAATAATG
GACTACATCGAAGGAAATTCGGTAAGTATCGAACGTACCCTCCTTTCGCC
CGGCACTAAGATCAACCAAACCCGCCGCTCAATCGACCTGGAGTCGGAAC
GAGGAATACGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGT
GGAACCACGTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAG
GGCAAGGCGGAGGGAGACTCATTACCTGGATTGGCGGTGGCGGAGGGAGG
AAGGGTTGACTTGGCGGGAGCACCGGGACACGTATCACAAGTTCTTCCAC
AAGGCCATATTGGATGAAAACCCGTCGTGTCTTACTGGAGAATCGACGCC
AAGCTATATGCTGCATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGG
CGCCCGAGGCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCC
TACAGTCAGTACCAAATGGTGATTGACCCGGATGGCACCCCAGAGCAGAA
AAAAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCG
AGAAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACG
TACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGG
CAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGT
GGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACC
GAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTT
TGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGA
ATACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCA
GCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACC
GAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCA
ATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACA
AATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA

Synonyms

Publications