jgi.p|Nanoce1779_2|524354, mRNA_2177 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524354
Unique NamemRNA_2177
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1473
Alignment locationscaffold_4:971296..973194 +

Link to JBrowse

Properties
Property NameValue
TranscriptId524440
TrackFilteredModels2
ProteinId524354
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:971296..973194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524354gene_2177Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524354mRNA_2177-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2177CDS_2177Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC
AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC
CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC
CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA
CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT
TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC
TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA
TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA
ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG
GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG
GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA
ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG
TATGGCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCC
TCCTTCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTG
GCAACCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACC
CTTCACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGC
CCTGTGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCG
TGGAAGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTAC
AGCATGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAG
CACACGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTG
CTACGTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAG
TGGGTCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCG
TAGTGATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGG
AGGGAAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGAT
GCGGTTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATG
GACTATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGA
AGGGAGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATG
AAGAAAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGG
ACACGCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGG
ACTTTTTGGAGGGGCGGTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|524354

>mRNA_2177-protein ID=mRNA_2177-protein|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAIAPAPAAEGLTPPQPVPVASLVPTINNTSTQPPQPPPPPFDGSYTPEA
LADEIILGLPGLTTPLNFRQFSGYLPITDTKNIFYWYVEAEETPDEAPLV
FWTNGGPGCSGLFGLMNENGPFRPTADGKAVHLNPYSWNKVANMLFVEQP
VTVGFSYTDNPEDLVFGDDQAALDNYLVILMFLNRYPHMRHRDLYLSGES
YGGHYLPFLAQETAALPPSLAPHQSLNLRGFLVGNPSTDPVLQLIGQVDT
LHSRHLLPPYLYERWTALCASTPTVPHLGSTACVEVQREVLEAVSEYDVY
SMGYPPCPLLAAGEEHSTRPSSSSPSPCQALYGATYLNRLDVKGAIHANK
WVTWEDCSSLILETFERSDWSLFDFNSLVEGRTEGRREPLRVLLYSGEDD
AVCSSKGTELWLETLGWTIADEWAPWSVREGGRKGESEGKAGGAQVVAGM
KKKYENGVVYATVNGAGHAVPSFKPREALQLFTDFLEGRL*
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mRNA from alignment at scaffold_4:971296..973194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at scaffold_4:971296..973194+ (Nannochloropsis oceanica)
ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG TATGGCGGGCATTATCTCCCATTCCTCGCCCGTTTCATCCTGGACAAAAA CCAAGAGATACAGGCATCCGCTGCAGCTGCACCATCAGCAACAGCAACAG CAGAGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCTC AACCTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCCA ACTCATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCCT ACCTCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCCC CACCTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGGC AGTGAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTGC TGGCCGCAGGGGAAGAAGTGACGAGTATCAGCAGCAGAAATCGCAGTAGC AGCACGAGAAGTAGCATTGAACAGAGGAGTAAAAATACGACTGCGCTAAC CGGGGATAAGACGAAGAGAGGAGTGGAGGGAGGGATGGGGGGAGGAAGGT TTAATTTACTGGGGAATGACGAGTACTGGGCGGAGTTATTTGAAATGGAG CAGAGCAACTCTGGAGTAGTAGCAGCAACAGCACCAGCACCAGCACCAGC ACCAGCAGCACCAATACCAGCACCAGCGCCAGCAAGCATACCTGCAGGCA ATCGTAGCACAGCACACGGCCCTCATCATCATCGCCATCTCCGTTCCCCT ACCCGTCGCTCCGTCCTTCCCTCTTTGCCTACATCGCCTCCTTTACCCTA TGAGAGCTGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATG TCAAGGGGGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCT TCTTTGATTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTT TAATAGTCTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGG TGTTGTTGTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACA GAACTGTGGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCC TTGGTCCGTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAG GTGGAGCCCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTG GTTTATGCGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCC GCGCGAGGCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAA
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Coding sequence (CDS) from alignment at scaffold_4:971296..973194+

>mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=CDS|length=5892bp|location=Sequence derived from alignment at scaffold_4:971296..973194+ (Nannochloropsis oceanica)
ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC
AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC
CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC
CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA
CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT
TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC
TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA
TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA
ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG
GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG
GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA
ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG
TATGGCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCC
TCCTTCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTG
GCAACCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACC
CTTCACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGC
CCTGTGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCG
TGGAAGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTAC
AGCATGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAG
CACACGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTG
CTACGTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAG
TGGGTCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCG
TAGTGATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGG
AGGGAAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGAT
GCGGTTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATG
GACTATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGA
AGGGAGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATG
AAGAAAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGG
ACACGCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGG
ACTTTTTGGAGGGGCGGTTGTAAATGGCCATTGCACCCGCTCCCGCTGCC
GAGGGCCTAACTCCGCCACAACCAGTACCAGTAGCTTCGCTCGTGCCAAC
TATCAACAATACGTCCACCCAACCACCACAACCACCACCACCACCTTTTG
ATGGCAGTTACACGCCTGAAGCCCTCGCTGACGAAATAATTTTAGGCCTG
CCCGGCCTCACGACGCCTCTTAACTTCCGTCAATTTTCCGGATACCTTCC
CATCACTGATACCAAAAACATCTTCTACTGGTATGTTGAGGCGGAGGAGA
CGCCCGACGAGGCACCCCTCGTCTTCTGGACCAATGGCGGCCCCGGGTGT
TCTGGGCTGTTCGGCTTGATGAATGAAAACGGGCCTTTCCGTCCGACTGC
CGACGGCAAGGCCGTGCATCTCAACCCTTACAGCTGGAACAAGGTTGCCA
ACATGCTCTTCGTCGAGCAGCCGGTAACGGTCGGTTTCAGCTACACCGAT
AACCCGGAGGACCTCGTCTTTGGGGATGACCAAGCCGCTCTGGACAACTA
CCTGGTGATTTTAATGTTTCTGAATCGTTATCCGCACATGCGTCATCGTG
ACTTGTACTTGTCTGGGGAGTCGTATGGCGGGCATTATCTCCCATTCCTC
GCCCAGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCT
CAACCTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCC
AACTCATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCC
TACCTCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCC
CCACCTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGG
CAGTGAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTG
CTGGCCGCAGGGGAAGAACACAGCACACGGCCCTCATCATCATCGCCATC
TCCCTGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATGTCA
AGGGGGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCTTCT
TTGATTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTTTAA
TAGTCTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGGTGT
TGTTGTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACAGAA
CTGTGGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCCTTG
GTCCGTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAGGTG
GAGCCCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTGGTT
TATGCGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCCGCG
CGAGGCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAAATGG
CCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACCAGTA
CCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAACCACC
ACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCCCTCG
CTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAACTTC
CGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCTTCTA
CTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTCTTCT
GGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAATGAA
AACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCAACCC
TTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCGGTAA
CGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGGGGAT
GACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGAATCG
TTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCGTATG
GCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCCTCCT
TCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTGGCAA
CCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACCCTTC
ACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGCCCTG
TGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCGTGGA
AGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTACAGCA
TGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAGCACA
CGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTGCTAC
GTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAGTGGG
TCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCGTAGT
GATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGGAGGG
AAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGATGCGG
TTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATGGACT
ATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGAAGGG
AGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATGAAGA
AAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGGACAC
GCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGGACTT
TTTGGAGGGGCGGTTGTAAATGGCCATTGCACCCGCTCCCGCTGCCGAGG
GCCTAACTCCGCCACAACCAGTACCAGTAGCTTCGCTCGTGCCAACTATC
AACAATACGTCCACCCAACCACCACAACCACCACCACCACCTTTTGATGG
CAGTTACACGCCTGAAGCCCTCGCTGACGAAATAATTTTAGGCCTGCCCG
GCCTCACGACGCCTCTTAACTTCCGTCAATTTTCCGGATACCTTCCCATC
ACTGATACCAAAAACATCTTCTACTGGTATGTTGAGGCGGAGGAGACGCC
CGACGAGGCACCCCTCGTCTTCTGGACCAATGGCGGCCCCGGGTGTTCTG
GGCTGTTCGGCTTGATGAATGAAAACGGGCCTTTCCGTCCGACTGCCGAC
GGCAAGGCCGTGCATCTCAACCCTTACAGCTGGAACAAGGTTGCCAACAT
GCTCTTCGTCGAGCAGCCGGTAACGGTCGGTTTCAGCTACACCGATAACC
CGGAGGACCTCGTCTTTGGGGATGACCAAGCCGCTCTGGACAACTACCTG
GTGATTTTAATGTTTCTGAATCGTTATCCGCACATGCGTCATCGTGACTT
GTACTTGTCTGGGGAGTCGTATGGCGGGCATTATCTCCCATTCCTCGCCC
AGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCTCAAC
CTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCCAACT
CATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCCTACC
TCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCCCCAC
CTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGGCAGT
GAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTGCTGG
CCGCAGGGGAAGAACACAGCACACGGCCCTCATCATCATCGCCATCTCCC
TGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATGTCAAGGG
GGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCTTCTTTGA
TTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTTTAATAGT
CTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGGTGTTGTT
GTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACAGAACTGT
GGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCCTTGGTCC
GTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAGGTGGAGC
CCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTGGTTTATG
CGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCCGCGCGAG
GCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAA
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Synonyms
Publications