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Properties
Property Name | Value |
TranscriptId | 524440 |
Track | FilteredModels2 |
ProteinId | 524354 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:971296..973194 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG TATGGCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCC TCCTTCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTG GCAACCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACC CTTCACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGC CCTGTGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCG TGGAAGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTAC AGCATGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAG CACACGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTG CTACGTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAG TGGGTCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCG TAGTGATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGG AGGGAAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGAT GCGGTTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATG GACTATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGA AGGGAGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATG AAGAAAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGG ACACGCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGG ACTTTTTGGAGGGGCGGTTGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|524354 >mRNA_2177-protein ID=mRNA_2177-protein|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MAIAPAPAAEGLTPPQPVPVASLVPTINNTSTQPPQPPPPPFDGSYTPEA LADEIILGLPGLTTPLNFRQFSGYLPITDTKNIFYWYVEAEETPDEAPLV FWTNGGPGCSGLFGLMNENGPFRPTADGKAVHLNPYSWNKVANMLFVEQP VTVGFSYTDNPEDLVFGDDQAALDNYLVILMFLNRYPHMRHRDLYLSGES YGGHYLPFLAQETAALPPSLAPHQSLNLRGFLVGNPSTDPVLQLIGQVDT LHSRHLLPPYLYERWTALCASTPTVPHLGSTACVEVQREVLEAVSEYDVY SMGYPPCPLLAAGEEHSTRPSSSSPSPCQALYGATYLNRLDVKGAIHANK WVTWEDCSSLILETFERSDWSLFDFNSLVEGRTEGRREPLRVLLYSGEDD AVCSSKGTELWLETLGWTIADEWAPWSVREGGRKGESEGKAGGAQVVAGM KKKYENGVVYATVNGAGHAVPSFKPREALQLFTDFLEGRL* back to topmRNA from alignment at scaffold_4:971296..973194+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at scaffold_4:971296..973194+ (Nannochloropsis oceanica) ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC
AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC
CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC
CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA
CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT
TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC
TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA
TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA
ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG
GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG
GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA
ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG
TATGGCGGGCATTATCTCCCATTCCTCGCCCGTTTCATCCTGGACAAAAA
CCAAGAGATACAGGCATCCGCTGCAGCTGCACCATCAGCAACAGCAACAG
CAGAGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCTC
AACCTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCCA
ACTCATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCCT
ACCTCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCCC
CACCTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGGC
AGTGAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTGC
TGGCCGCAGGGGAAGAAGTGACGAGTATCAGCAGCAGAAATCGCAGTAGC
AGCACGAGAAGTAGCATTGAACAGAGGAGTAAAAATACGACTGCGCTAAC
CGGGGATAAGACGAAGAGAGGAGTGGAGGGAGGGATGGGGGGAGGAAGGT
TTAATTTACTGGGGAATGACGAGTACTGGGCGGAGTTATTTGAAATGGAG
CAGAGCAACTCTGGAGTAGTAGCAGCAACAGCACCAGCACCAGCACCAGC
ACCAGCAGCACCAATACCAGCACCAGCGCCAGCAAGCATACCTGCAGGCA
ATCGTAGCACAGCACACGGCCCTCATCATCATCGCCATCTCCGTTCCCCT
ACCCGTCGCTCCGTCCTTCCCTCTTTGCCTACATCGCCTCCTTTACCCTA
TGAGAGCTGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATG
TCAAGGGGGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCT
TCTTTGATTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTT
TAATAGTCTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGG
TGTTGTTGTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACA
GAACTGTGGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCC
TTGGTCCGTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAG
GTGGAGCCCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTG
GTTTATGCGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCC
GCGCGAGGCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAA back to topCoding sequence (CDS) from alignment at scaffold_4:971296..973194+ >mRNA_2177 ID=mRNA_2177|Name=jgi.p|Nanoce1779_2|524354|organism=Nannochloropsis oceanica|type=CDS|length=5892bp|location=Sequence derived from alignment at scaffold_4:971296..973194+ (Nannochloropsis oceanica) ATGGCCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACC AGTACCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAAC CACCACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCC CTCGCTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAA CTTCCGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCT TCTACTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTC TTCTGGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAA TGAAAACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCA ACCCTTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCG GTAACGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGG GGATGACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGA ATCGTTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCG TATGGCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCC TCCTTCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTG GCAACCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACC CTTCACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGC CCTGTGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCG TGGAAGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTAC AGCATGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAG CACACGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTG CTACGTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAG TGGGTCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCG TAGTGATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGG AGGGAAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGAT GCGGTTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATG GACTATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGA AGGGAGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATG AAGAAAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGG ACACGCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGG ACTTTTTGGAGGGGCGGTTGTAAATGGCCATTGCACCCGCTCCCGCTGCC GAGGGCCTAACTCCGCCACAACCAGTACCAGTAGCTTCGCTCGTGCCAAC TATCAACAATACGTCCACCCAACCACCACAACCACCACCACCACCTTTTG ATGGCAGTTACACGCCTGAAGCCCTCGCTGACGAAATAATTTTAGGCCTG CCCGGCCTCACGACGCCTCTTAACTTCCGTCAATTTTCCGGATACCTTCC CATCACTGATACCAAAAACATCTTCTACTGGTATGTTGAGGCGGAGGAGA CGCCCGACGAGGCACCCCTCGTCTTCTGGACCAATGGCGGCCCCGGGTGT TCTGGGCTGTTCGGCTTGATGAATGAAAACGGGCCTTTCCGTCCGACTGC CGACGGCAAGGCCGTGCATCTCAACCCTTACAGCTGGAACAAGGTTGCCA ACATGCTCTTCGTCGAGCAGCCGGTAACGGTCGGTTTCAGCTACACCGAT AACCCGGAGGACCTCGTCTTTGGGGATGACCAAGCCGCTCTGGACAACTA CCTGGTGATTTTAATGTTTCTGAATCGTTATCCGCACATGCGTCATCGTG ACTTGTACTTGTCTGGGGAGTCGTATGGCGGGCATTATCTCCCATTCCTC GCCCAGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCT CAACCTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCC AACTCATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCC TACCTCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCC CCACCTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGG CAGTGAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTG CTGGCCGCAGGGGAAGAACACAGCACACGGCCCTCATCATCATCGCCATC TCCCTGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATGTCA AGGGGGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCTTCT TTGATTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTTTAA TAGTCTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGGTGT TGTTGTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACAGAA CTGTGGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCCTTG GTCCGTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAGGTG GAGCCCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTGGTT TATGCGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCCGCG CGAGGCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAAATGG CCATTGCACCCGCTCCCGCTGCCGAGGGCCTAACTCCGCCACAACCAGTA CCAGTAGCTTCGCTCGTGCCAACTATCAACAATACGTCCACCCAACCACC ACAACCACCACCACCACCTTTTGATGGCAGTTACACGCCTGAAGCCCTCG CTGACGAAATAATTTTAGGCCTGCCCGGCCTCACGACGCCTCTTAACTTC CGTCAATTTTCCGGATACCTTCCCATCACTGATACCAAAAACATCTTCTA CTGGTATGTTGAGGCGGAGGAGACGCCCGACGAGGCACCCCTCGTCTTCT GGACCAATGGCGGCCCCGGGTGTTCTGGGCTGTTCGGCTTGATGAATGAA AACGGGCCTTTCCGTCCGACTGCCGACGGCAAGGCCGTGCATCTCAACCC TTACAGCTGGAACAAGGTTGCCAACATGCTCTTCGTCGAGCAGCCGGTAA CGGTCGGTTTCAGCTACACCGATAACCCGGAGGACCTCGTCTTTGGGGAT GACCAAGCCGCTCTGGACAACTACCTGGTGATTTTAATGTTTCTGAATCG TTATCCGCACATGCGTCATCGTGACTTGTACTTGTCTGGGGAGTCGTATG GCGGGCATTATCTCCCATTCCTCGCCCAGGAAACCGCGGCCCTTCCTCCT TCCCTTGCTCCTCATCAAAGCCTCAACCTGCGCGGCTTCCTGGTTGGCAA CCCCTCCACGGATCCCGTGCTCCAACTCATCGGCCAAGTCGACACCCTTC ACTCTCGGCATCTTCTCCCGCCCTACCTCTATGAGCGATGGACTGCCCTG TGTGCAAGCACGCCGACAGTCCCCCACCTGGGGTCCACCGCCTGCGTGGA AGTACAGAGGGAGGTGCTCGAGGCAGTGAGTGAATATGACGTGTACAGCA TGGGTTACCCTCCCTGTCCTTTGCTGGCCGCAGGGGAAGAACACAGCACA CGGCCCTCATCATCATCGCCATCTCCCTGCCAGGCGTTGTACGGTGCTAC GTATTTGAATCGGTTGGATGTCAAGGGGGCTATCCACGCGAATAAGTGGG TCACCTGGGAAGACTGCTCTTCTTTGATTCTGGAAACGTTTGAGCGTAGT GATTGGTCTTTGTTCGATTTTAATAGTCTAGTGGAAGGAAGGACGGAGGG AAGGAGGGAGCCGTTGAGGGTGTTGTTGTATTCTGGCGAGGACGATGCGG TTTGCTCGTCGAAGGGGACAGAACTGTGGCTTGAGACGTTGGGATGGACT ATTGCGGATGAGTGGGCGCCTTGGTCCGTGAGGGAAGGAGGGAGGAAGGG AGAAAGTGAGGGGAAGGCAGGTGGAGCCCAGGTCGTGGCGGGGATGAAGA AAAAGTATGAGAATGGGGTGGTTTATGCGACGGTCAATGGGGCTGGACAC GCAGTGCCGAGTTTTAAGCCGCGCGAGGCATTACAGTTGTTTACGGACTT TTTGGAGGGGCGGTTGTAAATGGCCATTGCACCCGCTCCCGCTGCCGAGG GCCTAACTCCGCCACAACCAGTACCAGTAGCTTCGCTCGTGCCAACTATC AACAATACGTCCACCCAACCACCACAACCACCACCACCACCTTTTGATGG CAGTTACACGCCTGAAGCCCTCGCTGACGAAATAATTTTAGGCCTGCCCG GCCTCACGACGCCTCTTAACTTCCGTCAATTTTCCGGATACCTTCCCATC ACTGATACCAAAAACATCTTCTACTGGTATGTTGAGGCGGAGGAGACGCC CGACGAGGCACCCCTCGTCTTCTGGACCAATGGCGGCCCCGGGTGTTCTG GGCTGTTCGGCTTGATGAATGAAAACGGGCCTTTCCGTCCGACTGCCGAC GGCAAGGCCGTGCATCTCAACCCTTACAGCTGGAACAAGGTTGCCAACAT GCTCTTCGTCGAGCAGCCGGTAACGGTCGGTTTCAGCTACACCGATAACC CGGAGGACCTCGTCTTTGGGGATGACCAAGCCGCTCTGGACAACTACCTG GTGATTTTAATGTTTCTGAATCGTTATCCGCACATGCGTCATCGTGACTT GTACTTGTCTGGGGAGTCGTATGGCGGGCATTATCTCCCATTCCTCGCCC AGGAAACCGCGGCCCTTCCTCCTTCCCTTGCTCCTCATCAAAGCCTCAAC CTGCGCGGCTTCCTGGTTGGCAACCCCTCCACGGATCCCGTGCTCCAACT CATCGGCCAAGTCGACACCCTTCACTCTCGGCATCTTCTCCCGCCCTACC TCTATGAGCGATGGACTGCCCTGTGTGCAAGCACGCCGACAGTCCCCCAC CTGGGGTCCACCGCCTGCGTGGAAGTACAGAGGGAGGTGCTCGAGGCAGT GAGTGAATATGACGTGTACAGCATGGGTTACCCTCCCTGTCCTTTGCTGG CCGCAGGGGAAGAACACAGCACACGGCCCTCATCATCATCGCCATCTCCC TGCCAGGCGTTGTACGGTGCTACGTATTTGAATCGGTTGGATGTCAAGGG GGCTATCCACGCGAATAAGTGGGTCACCTGGGAAGACTGCTCTTCTTTGA TTCTGGAAACGTTTGAGCGTAGTGATTGGTCTTTGTTCGATTTTAATAGT CTAGTGGAAGGAAGGACGGAGGGAAGGAGGGAGCCGTTGAGGGTGTTGTT GTATTCTGGCGAGGACGATGCGGTTTGCTCGTCGAAGGGGACAGAACTGT GGCTTGAGACGTTGGGATGGACTATTGCGGATGAGTGGGCGCCTTGGTCC GTGAGGGAAGGAGGGAGGAAGGGAGAAAGTGAGGGGAAGGCAGGTGGAGC CCAGGTCGTGGCGGGGATGAAGAAAAAGTATGAGAATGGGGTGGTTTATG CGACGGTCAATGGGGCTGGACACGCAGTGCCGAGTTTTAAGCCGCGCGAG GCATTACAGTTGTTTACGGACTTTTTGGAGGGGCGGTTGTAA back to top
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