jgi.p|Nanoce1779_2|578517, mRNA_1952 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578517
Unique Name	mRNA_1952
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2056
Alignment location	scaffold_4:426746..428995 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578603
Track	FilteredModels2
ProteinId	578517

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:426746..428995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578517	gene_1952	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578517	mRNA_1952-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1952	CDS_1952	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:426746..428995+
coding sequence from alignment at scaffold_4:426746..428995+

mRNA sequence

>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Nanoce1779_2|578517|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp
GTGGACCGCGGTTGTGAAGGAGGACATTCTTGTACGTTGCTGGTAGAGGG
GATATCACTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGCTGCTTGTGCTT
CAGCTCCCCCTCGTCCAAATAGGTCAGGGTGAAATTTCGGGGGTTCGTTG
CGCTGAAACGCACCAAAAAACTTCCTGGCCTTTTTCCCGCTCCCCCCCCG
AGCACAATCTCTTTGGCTTTTTGCCTTGTGATATTCCCGTGAAACCAAGG
CACCATCTCTCCCCATCCCTCCGTCCCTCCCTCCGTCACCACAAAAAATG
ACCGCGCCGCTTTTCCGATACAGCACTCCAGCGGACCGAATCGATGTAAA
AACACAGCCCATTCCTCTAAGGCGATCAGATTCCGTGCACGGTTCCCCTC
GCTTCGATCGATCAAATAACGAAGCACATCTTCCAATTCCACAAAACCTT
GCAGCTCCCCCGGGTAAGTCGTCCGCATCATTTCTCCCACCGCCTCGACA
AATCGAGGCCATGCCACCAAACGTCCACGACCAAATGCCTCCTTCCAGAA
GGCTAAACCGTCCTGCGTGTAGTCCTCCCCTCCCGTGACGGGATTGATGA
AGCTGCAACTACCACCGCCAATGCTGCGTGACGAATTGCATCCGCCCAGG
GTGGGTAATGTGGGTGGAGAGGCGAGTCTGGAATGTGTGCCGCATGTGCG
CCCAGGGGGCATCGCTAGCAGTTGCTTTCGAAAGGGCGGGACAGTGAAGC
GGAGCCGGGGAGGATACCTATGTCGAACAAGCGGCGGGACGTGCGTGCGA
TGACGGATGACCCAGAGAATTAATGCTAGGCGTTTGCGTGGGTTACCGCT
ATCTCTGCGGCGAGGGCTCTCGAGCCTGACTCCAGGTGGACTCACCCTGT
GTTATGAAGAGGGTTCGGATTGTTGTCGTGCACTTGTTTGGGTGTGAGCG
TGTGCTAGTTGTCGGTGAGCATGGCCTCCTTGAATATTGAAGCGCGGCCC
GTTGCAGCGCGTTCTCGGACCCACCCTCACCCCACACGAAACAACAAACA
CACACATGGACGCGTCACCCTACGCTCTACAGATATTCCCTCATCGGACA
GTTGTGGTGCATGGGCGAGCTCTTATCGGCTTGAACTTCCGCGTGCCCAG
TGTCGTCGACCGTGTCCTAGCTACCTGGGTAGGACAGCCCCTCTCCCCTT
CCTTCACTTCGCAACTGCTGCTGGCCACCTAACACCCCTGCTATTTCCAC
ATTTCATCCCCTCGACAGCTCTCACAGGACACCACCTAGCAGCAGCTCGG
CGGGTCACGCAGTATGTTCAGGGCTTGAGAGGAGGCTGCAAGCGTACATG
GGTCCCTTCAAGTCTCGAGCAGTGCCAGCACCAGCACCATCATCACCAGC
TCTAGTCCCTTTCTCGTTCTACTCCCTCGTCTCTCAAACGCTTACAAAAG
CGGTGTCTACACGCCACTTCGCCCTCATCCTCGTCCTTCTCATGAGTACT
TCACCCACAGATGGGGCGACTGGGATTCCCGCAGGGCCAACTGCACGCGG
CAAGCAAAACAATAATCCAATGCTCTTCTTACGACACATTCCGCAGACTT
CTAGTGAGTCTTTGGAGGCTGCTTCGTCCTCCTTGTCCACCTCGCAGCAT
GCGTATTATCGCTCTGCGGGCGCTGCAGCTGCCACGGGGAGTCGATACAA
TAATAATGGTATCGGTGGAGGAGGGGTAGGTCATCACAGCGTAGGTCATC
ACAGCCTCAATCATCTTTGCCATGACGAGGATGGGGAGGACGTGAGTAAA
ATTAGGTCCATGCATGGGAGAGCTGCTTTTATTAGTGCTACCAAGGCTTG
GCTTCGACGGGCTGTCGACGCGGTGTGGATCCCAGGGGGCAGTCCTGCAG
CAGCTGCAGTACCGCTACCATCACCCTAATCCTGGTTACAAGGTTGGACC
CCTTCTACTAGCGGCTCATCAAAATATAGGGGATGCTGTTCGTGGCGGGT
CTGGGGATGGAGGAGGAGGGGATGATAATGAGCAGCAGCAGCAGCAGCAG
CAGCAG

protein sequence of jgi.p|Nanoce1779_2|578517

>mRNA_1952-protein ID=mRNA_1952-protein|Name=jgi.p|Nanoce1779_2|578517|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MGPFKSRAVPAPAPSSPALVPFSFYSLVSQTLTKAVSTRHFALILVLLMS
TSPTDGATGIPAGPTARGKQNNNPMLFLRHIPQTSSESLEAASSSLSTSQ
HAYYRSAGAAAATGSRYNNNGIGGGGVGHHSVGHHSLNHLCHDEDGEDVS
KIRSMHGRAAFISATKAWLRRAVDAVWIPGGSPAAAAVPLPSP*

mRNA from alignment at scaffold_4:426746..428995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Nanoce1779_2|578517|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at scaffold_4:426746..428995+ (Nannochloropsis oceanica)
GTGGACCGCGGTTGTGAAGGAGGACATTCTTGTACGTTGCTGGTAGAGGG
GATATCACTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGCTGCTTGTGCTT
CAGCTCCCCCTCGTCCAAATAGGTCAGGGTGAAATTTCGGGGGTTCGTTG
CGCTGAAACGCACCAAAAAACTTCCTGGCCTTTTTCCCGCTCCCCCCCCG
AGCACAATCTCTTTGGCTTTTTGCCTTGTGATATTCCCGTGAAACCAAGG
CACCATCTCTCCCCATCCCTCCGTCCCTCCCTCCGTCACCACAAAAAATG
ACCGCGCCGCTTTTCCGATACAGCACTCCAGCGGACCGAATCGATGTAAA
AACACAGCCCATTCCTCTAAGGCGATCAGATTCCGTGCACGGTTCCCCTC
GCTTCGATCGATCAAATAACGAAGCACATCTTCCAATTCCACAAAACCTT
GCAGCTCCCCCGGGTAAGTCGTCCGCATCATTTCTCCCACCGCCTCGACA
AATCGAGGCCATGCCACCAAACGTCCACGACCAAATGCCTCCTTCCAGAA
GGCTAAACCGTCCTGCGTGTAGTCCTCCCCTCCCGTGACGGGATTGATGA
AGCTGCAACTACCACCGCCAATGCTGCGTGACGAATTGCATCCGCCCAGG
GTGGGTAATGTGGGTGGAGAGGCGAGTCTGGAATGTGTGCCGCATGTGCG
CCCAGGGGGCATCGCTAGCAGTTGCTTTCGAAAGGGCGGGACAGTGAAGC
GGAGCCGGGGAGGATACCTATGTCGAACAAGCGGCGGGACGTGCGTGCGA
TGACGGATGACCCAGAGAATTAATGCTAGGCGTTTGCGTGGGTTACCGCT
ATCTCTGCGGCGAGGGCTCTCGAGCCTGACTCCAGGTGGACTCACCCTGT
GTTATGAAGAGGGTTCGGATTGTTGTCGTGCACTTGTTTGGGTGTGAGCG
TGTGCTAGTTGTCGGTGAGCATGGCCTCCTTGAATATTGAAGCGCGGCCC
GTTGCAGCGCGTTCTCGGACCCACCCTCACCCCACACGAAACAACAAACA
CACACATGGACGCGTCACCCTACGCTCTACAGATATTCCCTCATCGGACA
GTTGTGGTGCATGGGCGAGCTCTTATCGGCTTGAACTTCCGCGTGCCCAG
TGTCGTCGACCGTGTCCTAGCTACCTGGGTAGGACAGCCCCTCTCCCCTT
CCTTCACTTCGCAACTGCTGCTGGCCACCTAACACCCCTGCTATTTCCAC
ATTTCATCCCCTCGACAGCTCTCACAGGACACCACCTAGCAGCAGCTCGG
CGGGTCACGCAGTATGTTCAGGGCTTGAGAGGAGGCTGCAAGCGTACATG
GGTCCCTTCAAGTCTCGAGCAGTGCCAGCACCAGCACCATCATCACCAGC
TCTAGTCCCTTTCTCGTTCTACTCCCTCGTCTCTCAAACGCTTACAAAAG
CGGTGTCTACACGCCACTTCGCCCTCATCCTCGTCCTTCTCATGAGTACT
TCACCCACAGATGGGGCGACTGGGATTCCCGCAGGGCCAACTGCACGCGG
CAAGCAAAACAATAATCCAATGCTCTTCTTACGACACATTCCGCAGACTT
CTAGTGAGTCTTTGGAGGCTGCTTCGTCCTCCTTGTCCACCTCGCAGCAT
GCGTATTATCGCTCTGCGGGCGCTGCAGCTGCCACGGGGAGTCGATACAA
TAATAATGGTATCGGTGGAGGAGGGGTAGGTCATCACAGCGTAGGTCATC
ACAGCCTCAATCATCTTTGCCATGACGAGGATGGGGAGGACGTGAGTAAA
ATTAGGTCCATGCATGGGAGAGCTGCTTTTATTAGTGCTACCAAGGCTTG
GCTTCGACGGGCTGTCGACGCGGTGTGGATCCCAGGGGGCAGTCCTGCTG
CTGCGGCTGCTGCCGCTGGAGGGATGGGTAGGGGTAGTAGTCCCAGCAGT
TACATGAAGTGGCGGGCAGCAAGTCAGGATATTTTGGGTTTGAGTGGAAG
TGCGGGCGGAGCGAATGGAGCGGGGGATGGGTTACGCTATTATAAGTCCC
CACCTTCTCACTATGCCTCGTTTCAGCAGCGGCAGCAGCTGCAGCAGCTG
CAGTACCGCTACCATCACCCTAATCCTGGTTACAAGGTTGGACCCCTTCT
ACTAGCGGCTCATCAAAATATAGGGGATGCTGTTCGTGGCGGGTCTGGGG
ATGGAGGAGGAGGGGATGATAATGAGCAGCAGCAGCAGCAGCAGCAGCAG

Coding sequence (CDS) from alignment at scaffold_4:426746..428995+

>mRNA_1952 ID=mRNA_1952|Name=jgi.p|Nanoce1779_2|578517|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at scaffold_4:426746..428995+ (Nannochloropsis oceanica)
ATGGGTCCCTTCAAGTCTCGAGCAGTGCCAGCACCAGCACCATCATCACC
AGCTCTAGTCCCTTTCTCGTTCTACTCCCTCGTCTCTCAAACGCTTACAA
AAGCGGTGTCTACACGCCACTTCGCCCTCATCCTCGTCCTTCTCATGAGT
ACTTCACCCACAGATGGGGCGACTGGGATTCCCGCAGGGCCAACTGCACG
CGGCAAGCAAAACAATAATCCAATGCTCTTCTTACGACACATTCCGCAGA
CTTCTAGTGAGTCTTTGGAGGCTGCTTCGTCCTCCTTGTCCACCTCGCAG
CATGCGTATTATCGCTCTGCGGGCGCTGCAGCTGCCACGGGGAGTCGATA
CAATAATAATGGTATCGGTGGAGGAGGGGTAGGTCATCACAGCGTAGGTC
ATCACAGCCTCAATCATCTTTGCCATGACGAGGATGGGGAGGACGTGAGT
AAAATTAGGTCCATGCATGGGAGAGCTGCTTTTATTAGTGCTACCAAGGC
TTGGCTTCGACGGGCTGTCGACGCGGTGTGGATCCCAGGGGGCAGTCCTG
CAGCAGCTGCAGTACCGCTACCATCACCCTAAATGGGTCCCTTCAAGTCT
CGAGCAGTGCCAGCACCAGCACCATCATCACCAGCTCTAGTCCCTTTCTC
GTTCTACTCCCTCGTCTCTCAAACGCTTACAAAAGCGGTGTCTACACGCC
ACTTCGCCCTCATCCTCGTCCTTCTCATGAGTACTTCACCCACAGATGGG
GCGACTGGGATTCCCGCAGGGCCAACTGCACGCGGCAAGCAAAACAATAA
TCCAATGCTCTTCTTACGACACATTCCGCAGACTTCTAGTGAGTCTTTGG
AGGCTGCTTCGTCCTCCTTGTCCACCTCGCAGCATGCGTATTATCGCTCT
GCGGGCGCTGCAGCTGCCACGGGGAGTCGATACAATAATAATGGTATCGG
TGGAGGAGGGGTAGGTCATCACAGCGTAGGTCATCACAGCCTCAATCATC
TTTGCCATGACGAGGATGGGGAGGACGTGAGTAAAATTAGGTCCATGCAT
GGGAGAGCTGCTTTTATTAGTGCTACCAAGGCTTGGCTTCGACGGGCTGT
CGACGCGGTGTGGATCCCAGGGGGCAGTCCTGCAGCAGCTGCAGTACCGC
TACCATCACCCTAA

Synonyms

Publications