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Properties
Property Name | Value |
TranscriptId | 578756 |
Track | FilteredModels2 |
ProteinId | 578670 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:509484..511702 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp GCCCCGTAGCCTTTCGTCCTCATCCTCTTTTTCGTGCTATCGTTCGCTTT TCCTCCCCCCTTCTCCTCCGGGGGCAGCATCATGGCTAGCTCCACAGGAA TCGCTTCGTCATCCTGACTCTCATCTTGAGTATCAAGTCTCCTGCCCCTT TTCTTAATCGCCAACGCCTCCGATGCTCGCGCGGTCGCGTCAGCCGCTGC AGCTGCTGCTGCTTTATTGGCAGCTGCGCGGGAGCCACGGATAGCAGCTG CGGCACCAGCGCTGGTCAGAGCTTCAGGGGAGGGCGTGAGAAGATCGAAG GGAACGACACGGACGAGGTAGTGAGAGGTGATCATTTTGTGGATTAGTGC TTGGAGCTTGGCACCGGTCATTAGGTAAGCTTTTCTGTTGCTGCTACTGC TGCTGTTGCTGCTCATGTTGTTGCCGCTGTTGGGCTTATTGACGTTGTCC TCGCCCTTGTCCTCACTATTATTGACTAGGCCTGCAGCAATGGCAGCTTG TCGACGTGTTTGCATTGTGGATTCCACCTGGGAATGGAGCTGGGAGAAGG GCAAACGCCCATGCAGCATGACACTTTCTAGCACTGCCTGTCCCTCTTCA CCGTAAAGCTGTCGGGCGCGGAGGAGGAACTTGGGGAAGCGTAGACGGAC GGTCACCCCGTCAAGGTCCATCTGGTAGTAGAAAAAGACGCGGGGATGCA CGCGTTGAATTTCCTCAGCTGTAGGCATAGCGACAATGAGGAGATTGTGT TGTATCAGAACGACGAGGGCGTCTTTGATTTGGCTGAGCTTGTGGCGGTG TCCCTCTTCGTCCACGATGTCCCGTCGGGCCTCGGCTAGGGTACATCGGC CGCGACGCAAGACGTAGGCGCCTACATCGCGGACGACGGAACCAAAATGC TCGTTTAAAATATTCAGGGCCAGCTTATACTGCTGGTTTGAGGAGGAGGC TCCGCCGTAGAGTGGTGAAACGGACATGGTGGTGTATTGGCACAAGAGCT ACAGGGAGGGGACGCAAGCTAGCCTGTGCGGCTGCTGAAGCAGATGATGC GCGGCTTAGGCTTGTGATTTGCGTTTGTTCCAGAGCTCCCACGTCCTCCT CCACCGCCTTTCTCGAGCCTTGAGGGTAATCCCTCTCCTTCTTTGCCCTG TGCTTGTGTTATGAAGATAGCAGGGGGTGGATAAGATGGATGGTATAGAA GGAGGACAGCGATGATTGATCACTAGCTGAGGCTCAGACTCTACCTTATG CACTTGCGCACCACAAACCTCAATGCGTATCACACATAGGGTTATCGTTT GTACAATTCGATCTGCACTGCGCTGCGCCTTGGGTCCTCCCAAAAGTTGA ACGCACTCCTTCGCAGCCGCCGACCTCCCCACCCTCCACACCAGCACACC ACCATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCT AGCTTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCA CCTCCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCA CCCCGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAA GGTGGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTG TCTCCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTC CAGCTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTC CTGCCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACAT TTATGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCA ACTTTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGA TGGGGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAA CGAATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAA TTTTTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGA GACATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGG AGGACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCT GCCCTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATA GTGCGAGAGTGCTTGGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|578670 >mRNA_1988-protein ID=mRNA_1988-protein|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp MLGSSRSPLLVPTFVLAFIILTQAFLLPIPDTTSALTFRQAIASSTPAPP RPPLPDNFYAETLLDKVALALFRRLVQQQIGFVSTKPGYDGLIEEARHFQ LQPGVTAEDQQRMVKSCLTTIAGPLVPPIYRTFMAPWFWAPFLTAIFTPT FFKFLVGPNKYDVRDDGAPGGVYAERCRFLEETNCKGLCLHMCKLPTQQF FKETLGLDMMMSPNYETYECRLSFGMVPKPVEEDESIPKGCLQGCGAVAA LQQQKLDRVTVCDGK* back to topmRNA from alignment at scaffold_4:509484..511702- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at scaffold_4:509484..511702- (Nannochloropsis oceanica) GCCCCGTAGCCTTTCGTCCTCATCCTCTTTTTCGTGCTATCGTTCGCTTT
TCCTCCCCCCTTCTCCTCCGGGGGCAGCATCATGGCTAGCTCCACAGGAA
TCGCTTCGTCATCCTGACTCTCATCTTGAGTATCAAGTCTCCTGCCCCTT
TTCTTAATCGCCAACGCCTCCGATGCTCGCGCGGTCGCGTCAGCCGCTGC
AGCTGCTGCTGCTTTATTGGCAGCTGCGCGGGAGCCACGGATAGCAGCTG
CGGCACCAGCGCTGGTCAGAGCTTCAGGGGAGGGCGTGAGAAGATCGAAG
GGAACGACACGGACGAGGTAGTGAGAGGTGATCATTTTGTGGATTAGTGC
TTGGAGCTTGGCACCGGTCATTAGGTAAGCTTTTCTGTTGCTGCTACTGC
TGCTGTTGCTGCTCATGTTGTTGCCGCTGTTGGGCTTATTGACGTTGTCC
TCGCCCTTGTCCTCACTATTATTGACTAGGCCTGCAGCAATGGCAGCTTG
TCGACGTGTTTGCATTGTGGATTCCACCTGGGAATGGAGCTGGGAGAAGG
GCAAACGCCCATGCAGCATGACACTTTCTAGCACTGCCTGTCCCTCTTCA
CCGTAAAGCTGTCGGGCGCGGAGGAGGAACTTGGGGAAGCGTAGACGGAC
GGTCACCCCGTCAAGGTCCATCTGGTAGTAGAAAAAGACGCGGGGATGCA
CGCGTTGAATTTCCTCAGCTGTAGGCATAGCGACAATGAGGAGATTGTGT
TGTATCAGAACGACGAGGGCGTCTTTGATTTGGCTGAGCTTGTGGCGGTG
TCCCTCTTCGTCCACGATGTCCCGTCGGGCCTCGGCTAGGGTACATCGGC
CGCGACGCAAGACGTAGGCGCCTACATCGCGGACGACGGAACCAAAATGC
TCGTTTAAAATATTCAGGGCCAGCTTATACTGCTGGTTTGAGGAGGAGGC
TCCGCCGTAGAGTGGTGAAACGGACATGGTGGTGTATTGGCACAAGAGCT
ACAGGGAGGGGACGCAAGCTAGCCTGTGCGGCTGCTGAAGCAGATGATGC
GCGGCTTAGGCTTGTGATTTGCGTTTGTTCCAGAGCTCCCACGTCCTCCT
CCACCGCCTTTCTCGAGCCTTGAGGGTAATCCCTCTCCTTCTTTGCCCTG
TGCTTGTGTTATGAAGATAGCAGGGGGTGGATAAGATGGATGGTATAGAA
GGAGGACAGCGATGATTGATCACTAGCTGAGGCTCAGACTCTACCTTATG
CACTTGCGCACCACAAACCTCAATGCGTATCACACATAGGGTTATCGTTT
GTACAATTCGATCTGCACTGCGCTGCGCCTTGGGTCCTCCCAAAAGTTGA
ACGCACTCCTTCGCAGCCGCCGACCTCCCCACCCTCCACACCAGCACACC
ACCATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCT
AGCTTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCA
CCTCCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCA
CCCCGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAA
GGTGGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTG
TCTCCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTC
CAGCTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTC
CTGCCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACAT
TTATGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCA
ACTTTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGA
TGGGGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAA
CGAATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAA
TTTTTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGA
GACATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGG
AGGACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCT
GCCCTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATA
GTGCGAGAGTGCTTGGAGA back to topCoding sequence (CDS) from alignment at scaffold_4:509484..511702- >mRNA_1988 ID=mRNA_1988|Name=jgi.p|Nanoce1779_2|578670|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_4:509484..511702- (Nannochloropsis oceanica) ATGTTGGGGAGCAGCCGGTCACCGCTTTTAGTACCGACCTTCGTCCTAGC TTTCATCATATTGACCCAAGCCTTTCTACTCCCTATTCCTGACACCACCT CCGCCCTCACTTTCCGACAAGCCATCGCGTCTTCCACCCCCGCTCCACCC CGTCCTCCCCTCCCCGACAATTTCTACGCCGAGACCCTCCTAGACAAGGT GGCTCTAGCCCTCTTCCGTCGCCTTGTGCAACAACAAATAGGTTTTGTCT CCACCAAACCAGGCTACGACGGCCTGATCGAAGAAGCACGGCACTTCCAG CTCCAACCGGGCGTGACAGCCGAGGATCAGCAACGCATGGTCAAGTCCTG CCTCACCACCATCGCTGGTCCGTTGGTGCCCCCCATCTACCGCACATTTA TGGCGCCTTGGTTCTGGGCCCCCTTTTTGACAGCTATTTTTACACCAACT TTCTTTAAATTCTTGGTGGGACCCAATAAATATGATGTGCGGGACGATGG GGCACCGGGGGGGGTGTATGCGGAACGGTGTCGATTTTTGGAGGAAACGA ATTGTAAGGGATTATGTCTGCATATGTGCAAGTTGCCCACACAGCAATTT TTTAAGGAAACCCTGGGTTTGGATATGATGATGAGTCCGAATTACGAGAC ATACGAGTGTCGGTTGTCGTTTGGGATGGTCCCGAAGCCGGTGGAGGAGG ACGAGAGCATTCCGAAGGGATGTCTGCAGGGGTGCGGTGCTGTCGCTGCC CTTCAACAGCAAAAGTTGGACCGGGTAACGGTTTGTGATGGGAAATAG back to top
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