jgi.p|Nanoce1779_2|578914, mRNA_2064 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578914
Unique NamemRNA_2064
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3049
Alignment locationscaffold_4:685586..688634 -

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Properties
Property NameValue
TranscriptId579000
TrackFilteredModels2
ProteinId578914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:685586..688634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578914gene_2064Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578914mRNA_2064-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2064CDS_2064Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp
ACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCCAGGAAA
TCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGAAAATGC
AGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATGTGTACC
GCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTATGGCGGC
ACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGGTGAGCC
GGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGTGCAGGA
CGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGAATGGGA
GAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGGGTCGAG
AAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCGATGGAC
ACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCAAGAATT
GTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTACAGAACC
TGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCACATGCCGTTT
CCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGAGAAGGC
TGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGGTGTTGG
TCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTATAGCCGC
CCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAAGCTGTC
CGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCCTGGCAA
GTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCTGCACTG
GTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTCTGCAGC
GGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGGGAGGAC
GGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCGAACAGG
GTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGCGTCGAT
GGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAGTGCAGG
AGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAGGGGTAT
GTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGATCCGTAA
CGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGGTGCGGT
CTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTAGTGGGG
GGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCATGTCGAC
GGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACCGGTTGA
TCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTAGACCAG
GGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGCGTGCGA
TGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTGTGTGGG
ATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTCGATGGG
GATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTACGATGG
CACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCCCTCCTC
GCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGCCTCGGT
GGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGGTGCAAG
GGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCCCTTCGT
CTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCTCATCAG
CGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGGCGGGCC
TCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATGGTCCTA
CTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCATAAGCAG
CAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGATCAAGG
GGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGAAGGGCC
AAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTGTAACAT
GTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCTCTTTCT
CCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTACATTTGT
GTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCCCCACTA
CCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGGTTGGTG
GCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAGGAACAA
GAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCAATGACA
CACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGGGAAGCG
AGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTATCTATC
CAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAGAGACAG
ACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCGTGTTTT
TGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAATAATCTA
TACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAGGAAACA
AAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGACATAAT
GCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAAGATAGA
CGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTTAGCGAA
GCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGGTGAGA
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protein sequence of jgi.p|Nanoce1779_2|578914

>mRNA_2064-protein ID=mRNA_2064-protein|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MKMQGTRKGGGGAKTHVMCTAATFILLAGSAQSFMAAPASLMHSFLQESS
AVSRQTLGARVTTGTAAGAGRKRRSLTLAARGSEEWENASGGNSGSSGND
VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAAD
LQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQ
EVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMV
GLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVFRDLGG
EGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGA
LVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRT
PVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFD
DRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSV
IVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIG
SPPRKASGSSAGGAAASGLGGLGNDGKSRRSSSPGARGSRGSGGGQHRRS
RPSSPSSSSFPSRKDGAPHQRQGGPPSPSDDSASGGPRQNSPFLGGWILG
HGPTDLEGVGGVGMGGVHKQQEPAADFSSADGVVDQGEDSNNAAASEESK
EKGQEGEGSA*
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mRNA from alignment at scaffold_4:685586..688634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp|location=Sequence derived from alignment at scaffold_4:685586..688634- (Nannochloropsis oceanica)
ACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCCAGGAAA TCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGAAAATGC AGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATGTGTACC GCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTATGGCGGC ACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGGTGAGCC GGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGTGCAGGA CGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGAATGGGA GAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGGGTCGAG AAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCGATGGAC ACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCAAGAATT GTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTACAGAACC TGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCACATGCCGTTT CCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGAGAAGGC TGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGGTGTTGG TCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTATAGCCGC CCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAAGCTGTC CGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCCTGGCAA GTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCTGCACTG GTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTCTGCAGC GGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGGGAGGAC GGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCGAACAGG GTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGCGTCGAT GGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAGTGCAGG AGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAGGGGTAT GTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGATCCGTAA CGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGGTGCGGT CTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTAGTGGGG GGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCATGTCGAC GGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACCGGTTGA TCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTAGACCAG GGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGCGTGCGA TGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTGTGTGGG ATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTCGATGGG GATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTACGATGG CACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCCCTCCTC GCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGCCTCGGT GGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGGTGCAAG GGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCCCTTCGT CTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCTCATCAG CGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGGCGGGCC TCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATGGTCCTA CTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCATAAGCAG CAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGATCAAGG GGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGAAGGGCC AAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTGTAACAT GTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCTCTTTCT CCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTACATTTGT GTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCCCCACTA CCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGGTTGGTG GCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAGGAACAA GAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCAATGACA CACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGGGAAGCG AGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTATCTATC CAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAGAGACAG ACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCGTGTTTT TGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAATAATCTA TACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAGGAAACA AAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGACATAAT GCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAAGATAGA CGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTTAGCGAA GCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGGTGAGA
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Coding sequence (CDS) from alignment at scaffold_4:685586..688634-

>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_4:685586..688634- (Nannochloropsis oceanica)
ATGAAAATGCAGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGT
CATGTGTACCGCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTT
TTATGGCGGCACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCA
GCGGTGAGCCGGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGC
AGGTGCAGGACGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCG
AGGAATGGGAGAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGAC
GTGGGTCGAGAAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTG
GTCGATGGACACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAG
GGCAAGAATTGTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGAC
TTACAGAACCTGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCA
CATGCCGTTTCCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAAC
ACGAGAAGGCTGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAA
GAGGTGTTGGTCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTT
TTATAGCCGCCCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGG
TGAAGCTGTCCGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTG
GGCCTGGCAAGTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCA
TGCTGCACTGGTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGA
TTTCTGCAGCGGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGG
GAGGGAGGACGGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCA
TTCGAACAGGGTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAA
CGGCGTCGATGGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCA
CTAGTGCAGGAGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTG
CAAGGGGTATGTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTT
CGATCCGTAACGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACG
CCGGTGCGGTCTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGT
GGTAGTGGGGGGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGG
TCATGTCGACGGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGAT
GACCGGTTGATCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGA
AGTAGACCAGGGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAG
TGGCGTGCGATGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTC
ATTGTGTGGGATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCA
TGTCGATGGGGATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGG
TGTACGATGGCACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGA
TCCCCTCCTCGCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTC
TGGCCTCGGTGGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTC
CTGGTGCAAGGGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCT
CGCCCTTCGTCTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGC
CCCTCATCAGCGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGA
GTGGCGGGCCTCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGC
CATGGTCCTACTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGT
GCATAAGCAGCAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCG
TTGATCAAGGGGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAA
GAGAAGGGCCAAGAAGGGGAAGGGTCCGCGTAA
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Synonyms
Publications