jgi.p|Nanoce1779_2|579079, mRNA_2104 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579079
Unique NamemRNA_2104
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length642
Alignment locationscaffold_4:821656..822665 -

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Properties
Property NameValue
TranscriptId579165
TrackFilteredModels2
ProteinId579079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:821656..822665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579079gene_2104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579079mRNA_2104-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2104CDS_2104Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Nanoce1779_2|579079|organism=Nannochloropsis oceanica|type=mRNA|length=642bp
ACAGCCAGCCGCATCGCCTTAATCGGCTTCCTCCAGCCGTCATGCCTGCG
CATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCGCT
GGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTGCAAGAGG
CGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACGTGCGCTG
AAGCAGCGGATGGCCATGGGTATCGCCCAGTCACCGGCCAAGACGCTTGC
TATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGAGCATCATCT
CAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAATCTCTGCTC
GCCACAAATCAATGTTTCGAAAAGCTTGCCGACGGACAGACAAGCCTCCT
CCTTCCCAAGCTCCTCTATATTGCTCTCAATCTAGTCTTTTTGGGCATGG
GACTTTACAAGTGCAGCTCACTAGGCTTGCTTCCCAGCACGGCTGCGGAT
TTCGTCTCGCGTCTACCGGCTTCTATCGCCACTCGGGCAGAAGTTTCAGG
CGTTCCCCTCTAATAAACAGAAGCATAAGAAATATAAAGTAAGGAGAGAA
TGCATCTTCCACTTCACAGAATGCATCTTCTACTTCATGCCA
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protein sequence of jgi.p|Nanoce1779_2|579079

>mRNA_2104-protein ID=mRNA_2104-protein|Name=jgi.p|Nanoce1779_2|579079|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MPAHRGFASKLVSIEVEKPLGYYRESGAAQQRQVQEARAGKASIEEVNKE
RALKQRMAMGIAQSPAKTLAMQGFMMYMTGSSVSIISIMVVGMSLLNSFK
SLLATNQCFEKLADGQTSLLLPKLLYIALNLVFLGMGLYKCSSLGLLPST
AADFVSRLPASIATRAEVSGVPL*
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mRNA from alignment at scaffold_4:821656..822665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Nanoce1779_2|579079|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp|location=Sequence derived from alignment at scaffold_4:821656..822665- (Nannochloropsis oceanica)
ACAGCCAGCCGCATCGCCTTAATCGGCTTCCTCCAGCCGTCATGCCTGCG
CATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCGCT
GGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTGCAAGAGG
CGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACGTGCGCTG
AAGCAGCGGGTGAGTACAGGAGTCACAACGTCGTGAACTCCCCGCTTCTT
GAACCTAGCCTCCCTTTCAGTCTTCTCTCAAATGGGAAGAGTAAACTCCT
CTAAAAGACTTCGGGCTCCTATTCGACTGGGCTGCGAAACCTTTTTTGAT
CTCGATGCGACCAGTAAAAAATTAAGAAGCGGCCCTCCTTTCTCCCTCCC
ATATCTCCACTCAAGTCCCTTTCCTTATCCCCGTGAACTCGTTTCAACAA
TCATACCATCATAGATGGCCATGGGTATCGCCCAGTCACCGGCCAAGACG
CTTGCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGCGTGAGCAT
CATCTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTTTAAATCTC
TGCTCGCCACAAATCAATGTGAGTACGTGTAGACATGCCTTTTCAGTAGG
AGATTTGATAATGATGGCGTGTCTTTGACACGAAAAAATGACAGGTCTGA
CCACAAGGATGTAACGACTATCTCCACTCAGGTTTCGAAAAGCTTGCCGA
CGGACAGACAAGCCTCCTCCTTCCCAAGCTCCTCTATATTGCTCTCAATC
TAGTCTTTTTGGGCATGGGACTTTACAAGTGCAGCTCACTAGGCTTGCTT
CCCAGCACGGCTGCGGATTTCGTCTCGCGTCTACCGGCTTCTATCGCCAC
TCGGGCAGAAGTTTCAGGCGTTCCCCTCTAATAAACAGAAGCATAAGAAA
TATAAAGTAAGGAGAGAATGCATCTTCCACTTCACAGAATGCATCTTCTA
CTTCATGCCA
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Coding sequence (CDS) from alignment at scaffold_4:821656..822665-

>mRNA_2104 ID=mRNA_2104|Name=jgi.p|Nanoce1779_2|579079|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_4:821656..822665- (Nannochloropsis oceanica)
GTTTCGAAAAGCTTGCCGACGGACAGACAAGCCTCCTCCTTCCCAAGCTC
CTCTATATTGCTCTCAATCTAGTCTTTTTGGGCATGGGACTTTACAAGTG
CAGCTCACTAGGCTTGCTTCCCAGCACGGCTGCGGATTTCGTCTCGCGTC
TACCGGCTTCTATCGCCACTCGGGCAGAAGTTTCAGGCGTTCCCCTCTAA
ATGGCCATGGGTATCGCCCAGTCACCGGCCAAGACGCTTGCTATGCAGGG
CTTCATGATGTACATGACGGGGTCGAGCGTGAGCATCATCTCAATCATGG
TCGTGGGCATGAGCCTTCTCAACTCGTTTAAATCTCTGCTCGCCACAAAT
CAATATGCCTGCGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAG
TGGAGAAGCCGCTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGA
CAAGTGCAAGAGGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAA
GGAACGTGCGCTGAAGCAGCGGGTTTCGAAAAGCTTGCCGACGGACAGAC
AAGCCTCCTCCTTCCCAAGCTCCTCTATATTGCTCTCAATCTAGTCTTTT
TGGGCATGGGACTTTACAAGTGCAGCTCACTAGGCTTGCTTCCCAGCACG
GCTGCGGATTTCGTCTCGCGTCTACCGGCTTCTATCGCCACTCGGGCAGA
AGTTTCAGGCGTTCCCCTCTAAATGGCCATGGGTATCGCCCAGTCACCGG
CCAAGACGCTTGCTATGCAGGGCTTCATGATGTACATGACGGGGTCGAGC
GTGAGCATCATCTCAATCATGGTCGTGGGCATGAGCCTTCTCAACTCGTT
TAAATCTCTGCTCGCCACAAATCAATATGCCTGCGCATAGGGGTTTCGCC
AGCAAGCTCGTCTCAATAGAAGTGGAGAAGCCGCTGGGGTACTATCGTGA
GAGTGGGGCGGCGCAGCAACGACAAGTGCAAGAGGCGCGCGCAGGCAAGG
CATCAATTGAGGAGGTGAACAAGGAACGTGCGCTGAAGCAGCGGGTTTCG
AAAAGCTTGCCGACGGACAGACAAGCCTCCTCCTTCCCAAGCTCCTCTAT
ATTGCTCTCAATCTAGTCTTTTTGGGCATGGGACTTTACAAGTGCAGCTC
ACTAGGCTTGCTTCCCAGCACGGCTGCGGATTTCGTCTCGCGTCTACCGG
CTTCTATCGCCACTCGGGCAGAAGTTTCAGGCGTTCCCCTCTAAATGGCC
ATGGGTATCGCCCAGTCACCGGCCAAGACGCTTGCTATGCAGGGCTTCAT
GATGTACATGACGGGGTCGAGCGTGAGCATCATCTCAATCATGGTCGTGG
GCATGAGCCTTCTCAACTCGTTTAAATCTCTGCTCGCCACAAATCAATAT
GCCTGCGCATAGGGGTTTCGCCAGCAAGCTCGTCTCAATAGAAGTGGAGA
AGCCGCTGGGGTACTATCGTGAGAGTGGGGCGGCGCAGCAACGACAAGTG
CAAGAGGCGCGCGCAGGCAAGGCATCAATTGAGGAGGTGAACAAGGAACG
TGCGCTGAAGCAGCGG
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Synonyms
Publications