jgi.p|Nanoce1779_2|579168, mRNA_2120 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579168
Unique NamemRNA_2120
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length511
Alignment locationscaffold_4:853322..854151 -

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Properties
Property NameValue
TranscriptId579254
TrackFilteredModels2
ProteinId579168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:853322..854151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579168gene_2120Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579168mRNA_2120-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2120CDS_2120Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2120 ID=mRNA_2120|Name=jgi.p|Nanoce1779_2|579168|organism=Nannochloropsis oceanica|type=mRNA|length=511bp
ACAGGAACCATAACAGCACCAGTATAACAAGCATGATATCTTCAATTACG
GCCGTGGACGTCAAGGGCGTGGGCAAGAGCTTGATGGCCGAATACAAGAA
GAGTGCCACGACCCAAACCAAAATTGTGGACCTTTTCCTGGCCTTCATTC
TTGTGACGGGCATTCTCCAGTTCCTCTACTGTGTCATTGTAGGCTCCTTC
CCATTTAATTCCTTTCTTTCTGGCTTTTTGAGCTGCGTCGGCATGTTCGC
CTTGACAGTGTCATTGCGGCTGCAGGTGAGCTCGGAGAAGGTGGTGGAGA
AGGCCTTCGGGGAATACGCGTTTTGCTGCCTCTTGCTCTTCTTCGTCGTC
TTCAACTTTATCGGGTAGATTGTCGAATACGAAAACTGAAAGACGGGAGA
GTGGAGGAGGGAACCCCTACCAGAAAGCATACAGAGGGATTTCTGATCAA
CACTTTAACGATCAACCACGGGGGGCGGTGAAAAAGAACAAAGAAGTGAA
GTAGCAGCATA
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protein sequence of jgi.p|Nanoce1779_2|579168

>mRNA_2120-protein ID=mRNA_2120-protein|Name=jgi.p|Nanoce1779_2|579168|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MISSITAVDVKGVGKSLMAEYKKSATTQTKIVDLFLAFILVTGILQFLYC
VIVGSFPFNSFLSGFLSCVGMFALTVSLRLQVSSEKVVEKAFGEYAFCCL
LLFFVVFNFIG*
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mRNA from alignment at scaffold_4:853322..854151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2120 ID=mRNA_2120|Name=jgi.p|Nanoce1779_2|579168|organism=Nannochloropsis oceanica|type=mRNA|length=830bp|location=Sequence derived from alignment at scaffold_4:853322..854151- (Nannochloropsis oceanica)
ACAGGAACCATAACAGCACCAGTATAACAAGCATGATATCTTCAATTACG
GCCGTGGACGTCAAGGGCGTGGGCAAGAGCTTGATGGCCGAATACAAGAA
GAGTGCCACGACCCAAACCAAAATTGTGGACCTTTTCCTGGCCTTCATTC
TTGTGACGGGCATTCTCCAGTTCCTCTACTGTGTCATTGTAGGCTCCTTC
CCATTTAATTCCTTTCTTTCTGGCTTTTTGAGCTGCGTCGGCATGTTCGC
CTTGACAGGTACGTTTGTTGGAAGTCAAGAGATGGTGGTTGGAGAGGGCC
TGGGAAGGGAGGGCGAGCGAGGCATGAGGGTAGAGAGGGGAAGGATTCAA
GGGCATGTGTTCTGCCGCTAGTCTGCATATTCTTGCCTGCGCTTGCTACA
ACGCTTGCATGACCATCATGTGAGGTAGCGGGTGGGAAAGAGCAAGGAGA
AGGATCAAGCTGTATCGGCGCTCTCTCATTATTCATCATTGCCAATTTTT
ATTTACGCATTTTTTTTCCTACGACACATACACTCATGTACACACTCGCA
CTGTCACGTTCTTCATGATGTACGTAGTGTCATTGCGGCTGCAGGTGAGC
TCGGAGAAGGTGGTGGAGAAGGCCTTCGGGGAATACGCGTTTTGCTGCCT
CTTGCTCTTCTTCGTCGTCTTCAACTTTATCGGGTAGATTGTCGAATACG
AAAACTGAAAGACGGGAGAGTGGAGGAGGGAACCCCTACCAGAAAGCATA
CAGAGGGATTTCTGATCAACACTTTAACGATCAACCACGGGGGGCGGTGA
AAAAGAACAAAGAAGTGAAGTAGCAGCATA
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Coding sequence (CDS) from alignment at scaffold_4:853322..854151-

>mRNA_2120 ID=mRNA_2120|Name=jgi.p|Nanoce1779_2|579168|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_4:853322..854151- (Nannochloropsis oceanica)
TGTCATTGCGGCTGCAGGTGAGCTCGGAGAAGGTGGTGGAGAAGGCCTTC
GGGGAATACGCGTTTTGCTGCCTCTTGCTCTTCTTCGTCGTCTTCAACTT
TATCGGGTAGATGATATCTTCAATTACGGCCGTGGACGTCAAGGGCGTGG
GCAAGAGCTTGATGGCCGAATACAAGAAGAGTGCCACGACCCAAACCAAA
ATTGTGGACCTTTTCCTGGCCTTCATTCTTGTGACGGGCATTCTCCAGTT
CCTCTACTGTGTCATTGTAGGCTCCTTCCCATTTAATTCCTTTCTTTCTG
GCTTTTTGAGCTGCGTCGGCATGTTCGCCTTGACAGTGTCATTGCGGCTG
CAGGTGAGCTCGGAGAAGGTGGTGGAGAAGGCCTTCGGGGAATACGCGTT
TTGCTGCCTCTTGCTCTTCTTCGTCGTCTTCAACTTTATCGGGTAGATGA
TATCTTCAATTACGGCCGTGGACGTCAAGGGCGTGGGCAAGAGCTTGATG
GCCGAATACAAGAAGAGTGCCACGACCCAAACCAAAATTGTGGACCTTTT
CCTGGCCTTCATTCTTGTGACGGGCATTCTCCAGTTCCTCTACTGTGTCA
TTGTAGGCTCCTTCCCATTTAATTCCTTTCTTTCTGGCTTTTTGAGCTGC
GTCGGCATGTTCGCCTTGACAG
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Synonyms
Publications