jgi.p|Nanoce1779_2|659579, mRNA_1812 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|659579
Unique Name	mRNA_1812
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2056
Alignment location	scaffold_4:65482..67888 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	659665
Track	FilteredModels2
ProteinId	659579

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:65482..67888 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659579	gene_1812	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659579	mRNA_1812-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1812	CDS_1812	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:65482..67888+
coding sequence from alignment at scaffold_4:65482..67888+

mRNA sequence

>mRNA_1812 ID=mRNA_1812|Name=jgi.p|Nanoce1779_2|659579|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp
ATGCTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGT
CGAACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTAT
CGGAGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCT
CTGCCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCC
CCTGGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACA
GTAGAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCA
CCCCTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTC
AGCTCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTT
TCCTCCTCTTCCTCGTCACGACCTTCTTGGTTATTGGAACATATGCGATG
GCCCGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCA
GGCGCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCG
TGCTCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTAC
ACGTGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAA
TAACTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGG
AGGTGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGG
GGAGCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGG
AGAGATCGAGGGAGGGGCCTTGGAAGTAGGTGCGGATAAGGAGAACGAGG
AATCCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGG
AGCAGTCACAACAACGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGCC
CTTCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTGG
AAGCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGATA
TTGTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTGAT
GAGGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAGA
AAGAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGCA
GCAGCAGCAGCAGCAGGAGGAGGGATAGGAGACGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAAGGAGAGGGGCTAT
AGAGGAAGGGATTAGAGAGTGGTTACCGCTCCTGGATGGTAGCTGATTGT
GGAGAGTCGCAGGGGATGCGAGAACGGCAACAACACAAAGCAAGTAATAA
GCAGGTTTGTAGAAATATATAGAAGAGAGGAAGAGAGACGGCAGGGAAAG
CTCGCGTGGAACTCGCCTGCATGCACCGCGTCTTTTTCGCACGCGGCCGG
GACGAGGAGGTAATAATAAGTCTATAGCAGTAGCAGAGTAGCAGTGTGTG
GTGGTTGTGCACCCCCGCGCGTGTATGTGTTTTAAGAGCAGCAATTTCCA
GCAAGAGTGGCAGTAGCAACAGGAGTGGTACCAGTAGCGGCAGCAGTAGC
AGCAGCAGCGGCAGTAGAAATAGCAGCAGTAGCTGCAGCAGCAGAAATGA
CGTAAGTACACATTACAGAGGACAAATGCAATAACACTATTAAGGCCGAG
AAAATAAGCAGTAGCACCAGCAACAATGTTTTAAGGACACTGAATAGTGT
GTGGGATGATAAAGATGAGTATGAGGACGAGAAACACCATACGGACGGGT
CCAGGCGAGACACATAAGTCATAGAAGAAAACAAAGTATTTTCTCCCGCG
CCTCTTCGCCTTCTCTAGTGCTCCAGTTACTTTCTGCTCTGGCCCATCAG
AAGCCCCTTCATACTTTTGTGCGTTCTGCTCTTGTTCTTTCACTTCACTG
CATGCGATAGAAAGACAACGCCGGAACTCAAACCGAGGAAACAGCGTGGC
AGTTTT

protein sequence of jgi.p|Nanoce1779_2|659579

>mRNA_1812-protein ID=mRNA_1812-protein|Name=jgi.p|Nanoce1779_2|659579|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MLDAAAIPTDPHDDTRVEQPTHVVDPAHSLPDLSELHHVDVEAKNSRSLP
LPLLPLNTPDPTTPSLPLVHADIHSATTSTSNNSREGCDGSRQPPAEPMS
PLRSRGISTSSTLGPSSAPRTWRLYFHNHRRFFFLLFLVTTFLVIGTYAM
ARYKDEFLQVAQYIQDQAPLSAVYMSLLLVLWIVLCLPATLLEIIAGMIY
TWPVAVVSITVGKQIGNNLGFWLGQCITTGSFKEVFLGRLAQRKQEAEAR
GAAIGESSSETEGMERGEIEGGALEVGADKENEESDIENSRTALQRVTSG
SSHNNVYTLCCFVAELPFTILWVHIGQSTRSLLEAMEGRQRGKSHLLHEI
LLLVLSVVLLVALGFLMRRYTAKYAKHLEEEREKEEAEEEAEEERRRVAA
AAAAAGGGIGDGGGGGGGGGGPVARPSTEGEGL*

mRNA from alignment at scaffold_4:65482..67888+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1812 ID=mRNA_1812|Name=jgi.p|Nanoce1779_2|659579|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_4:65482..67888+ (Nannochloropsis oceanica)
ATGCTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGT
CGAACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTAT
CGGAGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCT
CTGCCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCC
CCTGGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACA
GTAGAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCA
CCCCTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTC
AGCTCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTT
TCCTCCTCTTCCTCGTCACGACCTTCTTGGTTATTGGAACATATGCGATG
GCCCGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCA
GGCGCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCG
TGCTCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTAC
ACGTGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAA
TAACTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGG
AGGTGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGG
GGAGCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGG
AGAGATCGAGGGAGGGGCCTTGGAAGTAGGTGCGGATAAGGAGAACGAGG
AATCCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGG
AGCAGTCACAACAACGGTAGCAGCACGTCAATAGACTCCGCTTTGAACTT
ACCACATACGAACACCACCATTTACGCCCCTACTGCTGTAGAGCCAGTAG
CAGAACCCCTTCCCTTATCCCTCCCCCCCTCATCTGAACTCCCCGTTCCT
GTTCCCCCGGCTACTTCGCCCCCCTCCCCACCCAGAGTCCTTTCTCAGCC
TCCTCCTTCCCCTCTTCGTCGCCGCCGACGCAAAACGACCCCCATTGAGG
CCTTGACGTGGGCTGTCAAAACACACCCCTGGCAAATATGCTTCCTCCTT
CGACTCCTCCCACTCCCGATTGCTGTCAAAAACTATGGCATGTCGTGCTT
ACCCTTCCCTCTCTTAGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGC
CCTTCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTG
GAAGCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGAT
ATTGTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTGA
TGAGGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAG
AAAGAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGC
AGCAGCAGCAGCAGCAGGAGGAGGGATAGGAGACGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAAGGAGAGGGGCTA
TAGAGGAAGGGATTAGAGAGTGGTTACCGCTCCTGGATGGTAGCTGATTG
TGGAGAGTCGCAGGGGATGCGAGAACGGCAACAACACAAAGCAAGTAATA
AGCAGGTTTGTAGAAATATATAGAAGAGAGGAAGAGAGACGGCAGGGAAA
GCTCGCGTGGAACTCGCCTGCATGCACCGCGTCTTTTTCGCACGCGGCCG
GGACGAGGAGGTAATAATAAGTCTATAGCAGTAGCAGAGTAGCAGTGTGT
GGTGGTTGTGCACCCCCGCGCGTGTATGTGTTTTAAGAGCAGCAATTTCC
AGCAAGAGTGGCAGTAGCAACAGGAGTGGTACCAGTAGCGGCAGCAGTAG
CAGCAGCAGCGGCAGTAGAAATAGCAGCAGTAGCTGCAGCAGCAGAAATG
ACGTAAGTACACATTACAGAGGACAAATGCAATAACACTATTAAGGCCGA
GAAAATAAGCAGTAGCACCAGCAACAATGTTTTAAGGACACTGAATAGTG
TGTGGGATGATAAAGATGAGTATGAGGACGAGAAACACCATACGGACGGG
TCCAGGCGAGACACATAAGTCATAGAAGAAAACAAAGTATTTTCTCCCGC
GCCTCTTCGCCTTCTCTAGTGCTCCAGTTACTTTCTGCTCTGGCCCATCA
GAAGCCCCTTCATACTTTTGTGCGTTCTGCTCTTGTTCTTTCACTTCACT
GCATGCGATAGAAAGACAACGCCGGAACTCAAACCGAGGAAACAGCGTGG
CAGTTTT

Coding sequence (CDS) from alignment at scaffold_4:65482..67888+

>mRNA_1812 ID=mRNA_1812|Name=jgi.p|Nanoce1779_2|659579|organism=Nannochloropsis oceanica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_4:65482..67888+ (Nannochloropsis oceanica)
ATGCTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGGGT
CGAACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTTAT
CGGAGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGCCT
CTGCCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTTCC
CCTGGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAACA
GTAGAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGTCA
CCCCTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCCTC
AGCTCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTTTT
TCCTCCTCTTCCTCGTCACGACCTTCTTGGTTATTGGAACATATGCGATG
GCCCGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGACCA
GGCGCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGATCG
TGCTCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCTAC
ACGTGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGCAA
TAACTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAAGG
AGGTGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCACGG
GGAGCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGAGG
AGAGATCGAGGGAGGGGCCTTGGAAGTAGGTGCGGATAAGGAGAACGAGG
AATCCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTGGG
AGCAGTCACAACAACGTATATACCTTGTGTTGCTTTGTGGCGGAGCTGCC
CTTCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTTGG
AAGCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGATA
TTGTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTGAT
GAGGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGAGA
AAGAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGGCA
GCAGCAGCAGCAGCAGGAGGAGGGATAGGAGACGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAAGGAGAGGGGCTAT
AGATGCTGGATGCTGCTGCCATTCCCACCGACCCACACGACGACACCCGG
GTCGAACAGCCTACCCATGTGGTCGATCCGGCACATTCATTGCCAGACTT
ATCGGAGCTACACCACGTGGACGTGGAAGCGAAAAACAGTCGCTCTCTGC
CTCTGCCGCTGCTGCCGTTGAACACTCCTGACCCGACCACCCCATCTCTT
CCCCTGGTGCATGCCGACATACACAGCGCGACCACTAGCACCAGCAATAA
CAGTAGAGAGGGTTGCGATGGCAGCAGACAGCCTCCTGCCGAACCCATGT
CACCCCTCCGATCCCGCGGCATCTCCACATCCTCCACCCTCGGTCCCTCC
TCAGCTCCCCGTACATGGCGCCTATATTTCCACAACCACCGTCGCTTCTT
TTTCCTCCTCTTCCTCGTCACGACCTTCTTGGTTATTGGAACATATGCGA
TGGCCCGGTACAAAGATGAGTTCTTGCAAGTCGCCCAGTACATCCAAGAC
CAGGCGCCGCTCTCGGCCGTTTACATGTCCCTTTTGCTCGTCCTGTGGAT
CGTGCTCTGTCTCCCTGCCACCTTATTGGAGATAATTGCTGGGATGATCT
ACACGTGGCCCGTGGCTGTCGTTTCCATTACGGTCGGAAAGCAGATAGGC
AATAACTTGGGATTCTGGTTGGGACAGTGTATTACTACGGGCTCGTTTAA
GGAGGTGTTTCTGGGGAGGCTGGCGCAGAGGAAGCAGGAGGCGGAGGCAC
GGGGAGCAGCAATAGGTGAAAGCAGTAGTGAAACGGAGGGGATGGAAAGA
GGAGAGATCGAGGGAGGGGCCTTGGAAGTAGGTGCGGATAAGGAGAACGA
GGAATCCGATATTGAGAACTCGCGGACCGCCCTCCAGCGGGTTACAAGTG
GGAGCAGTCACAACAACGTATATACCTTGTGTTGCTTTGTGGCGGAGCTG
CCCTTCACGATTCTGTGGGTCCACATCGGGCAGAGCACTAGGTCGTTGTT
GGAAGCGATGGAGGGACGGCAGAGGGGAAAGTCACACTTGTTGCATGAGA
TATTGTTGCTGGTTCTGTCGGTGGTGTTGCTGGTGGCTTTGGGGTTTCTG
ATGAGGAGGTACACGGCGAAGTACGCCAAGCATTTGGAGGAGGAGAGGGA
GAAAGAGGAGGCCGAGGAGGAGGCCGAGGAGGAAAGGCGGAGGGTTGCGG
CAGCAGCAGCAGCAGCAGGAGGAGGGATAGGAGACGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGACCGGTGGCGAGACCAAGTACAGAAGGAGAGGGGCT
ATAG

Synonyms

Publications