jgi.p|Nanoce1779_2|609080, mRNA_9536 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|609080
Unique Name	mRNA_9536
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1800
Alignment location	scaffold_44:38973..40772 -

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Properties


Property Name	Value
TranscriptId	609166
Track	FilteredModels2
ProteinId	609080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:38973..40772 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609080	gene_9536	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|609080	mRNA_9536-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9536	CDS_9536	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:38973..40772-
coding sequence from alignment at scaffold_44:38973..40772-

mRNA sequence

>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Nanoce1779_2|609080|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
GAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGA
GCAGGAGCGGCAGTATTAATAATTGGTGGGGGTGTGCAGTCCTTTGCGTT
TAGCCCTTTCTTCGCGCCGCCCTTGGTAATTCTCCCTCCTTCCTGGTCAA
CTTTCAAATCCAAAAAAAAGGAGAGAAACGCAGCAATACGGGAGACTACC
GCAGCAGGAACAGCACCAATGGCGTTTAAAAAGGTAGCCCTCCCTTCTCC
TCCTCCTTGTCCTTGCCTTCTAACCGATGCCTCTCATACGAAGCTCCTCA
AAACGGCCTTGGAACGTGCAGGTCTCTTTGATCGACAACGACGCATCGCT
CAATCCACCTCCATTCCTGGCTGTATGGCCATACCCATCCTACATCTCGA
GGACGAAAGTGACACAAATACAACCAAGCCCCTCCTAGCCGAGCTCCAGG
CGTGGTGCACCTCAACATCCGCCTCCGCACCTGCATCCCTACCCCACTCG
CGTGCTCTGCGTCTCTTTGTTGAAACCCTGAAAGGACAGCCACCATTCGA
ACTAATTAAAGGTTGGGGCGAAGAATGCCTGCCCTACGGTGCCGCAACAC
TCAACAATCAACTCCTTCGCCTCCAGACAGCCGTCCAAACTGCCCTCGAG
CAAGCCTCCCTCCCTCCCTCCCTCCTCACCCCCCAACTGCTCGCCGCTTT
GCACGTCGAGCGTCTCGGGGACGTGTTACTCTTGGAAGATAATCACCCAT
TTCGCGATTCCCAAGCGTGGGGGAAAGCCTACCCCTTTCTCTGGCCCGCC
TTGCTGACCGTCTTTCCCGGGGCCACCCGGCTGGCGCGCATGGCACCCAT
CCAAGGAGGTACTAAGCGTCGGTCCCAGGTGCAGCTTCTTTACCCTCCCC
TCCCACCATCACCAGAAGCAGCAGAAGCAGCAGCCGCGTCTGCTGTTCCG
GGGCCAGGGTGCCCGGGTTGGGTGATGGTGCGTGAGAATGGGCTGAAGTA
CGGCTTCGACATGACCAAGTCGATGTTTTCCTCAGGCAACGTGTCAGAGA
AAGCACGGATAGCGCGGATGGATTGTCGGGGGGAGACAGTTGTGGATCTG
TACGCTGGAATTGGGTATTACACTTTGCCGCTGGCGGTGCATGGGAAGGC
GGAGAGGGTTCTGGCGTGTGAGTGGAACACGGACGCGATTGCGGCCTTGA
GGTTCAATCTCAGGGAAAATGGGGTGGAGGGGGTAGTGGAGGTGATAGAA
GGGGACAACCGGGTGACTACTCTTGGCTTGCCTGATATGATAGCACACCG
CGTACACCTGGGTTTGATCCCTAGTAGTGAAGAGGGGTGGCCCATTGCAG
TGCGTTTGTTAAGAGAGGAAGGAGGGATGCTGCATGTGCATGGGAATATG
TTGGAGGAAGCCGTTGAGGCGTGGGTTGAAAGGGTTAAGAGAGAGGTGGC
AGAAATAGGGAATGGATTGGGGAGGACCTGGGCGGGGAAGGGGGTGAAGT
GCGTGCATGTGGAGAGGGTCAAAAGCTATGCGCCGTCGGTGTGGCATTTT
GTGGCGGATGTGCAGTGTGGGGATGGGGGGGGGAAAGAGGACTGGAGGAA
GGGAACAGGATTAAACTGCTCTCGCTTGGTCAGAGAAAATGAGAAAAAAT
ACGCTTTAACGGAGGCTGGAATTAGGAGGCCTTGCTGAATGTGGGGAAGC
TGAGGGGATGGGTGGTAGGGATAGCAGAGGGCCATTTACTGAGGTGTCAA
TTTTGACAACAAAAGAAAAGATGAAAGAAAGAAGAAAGTTTGCATATAAA

protein sequence of jgi.p|Nanoce1779_2|609080

>mRNA_9536-protein ID=mRNA_9536-protein|Name=jgi.p|Nanoce1779_2|609080|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MAFKKVALPSPPPCPCLLTDASHTKLLKTALERAGLFDRQRRIAQSTSIP
GCMAIPILHLEDESDTNTTKPLLAELQAWCTSTSASAPASLPHSRALRLF
VETLKGQPPFELIKGWGEECLPYGAATLNNQLLRLQTAVQTALEQASLPP
SLLTPQLLAALHVERLGDVLLLEDNHPFRDSQAWGKAYPFLWPALLTVFP
GATRLARMAPIQGGTKRRSQVQLLYPPLPPSPEAAEAAAASAVPGPGCPG
WVMVRENGLKYGFDMTKSMFSSGNVSEKARIARMDCRGETVVDLYAGIGY
YTLPLAVHGKAERVLACEWNTDAIAALRFNLRENGVEGVVEVIEGDNRVT
TLGLPDMIAHRVHLGLIPSSEEGWPIAVRLLREEGGMLHVHGNMLEEAVE
AWVERVKREVAEIGNGLGRTWAGKGVKCVHVERVKSYAPSVWHFVADVQC
GDGGGKEDWRKGTGLNCSRLVRENEKKYALTEAGIRRPC*

mRNA from alignment at scaffold_44:38973..40772-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Nanoce1779_2|609080|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at scaffold_44:38973..40772- (Nannochloropsis oceanica)
GAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGA
GCAGGAGCGGCAGTATTAATAATTGGTGGGGGTGTGCAGTCCTTTGCGTT
TAGCCCTTTCTTCGCGCCGCCCTTGGTAATTCTCCCTCCTTCCTGGTCAA
CTTTCAAATCCAAAAAAAAGGAGAGAAACGCAGCAATACGGGAGACTACC
GCAGCAGGAACAGCACCAATGGCGTTTAAAAAGGTAGCCCTCCCTTCTCC
TCCTCCTTGTCCTTGCCTTCTAACCGATGCCTCTCATACGAAGCTCCTCA
AAACGGCCTTGGAACGTGCAGGTCTCTTTGATCGACAACGACGCATCGCT
CAATCCACCTCCATTCCTGGCTGTATGGCCATACCCATCCTACATCTCGA
GGACGAAAGTGACACAAATACAACCAAGCCCCTCCTAGCCGAGCTCCAGG
CGTGGTGCACCTCAACATCCGCCTCCGCACCTGCATCCCTACCCCACTCG
CGTGCTCTGCGTCTCTTTGTTGAAACCCTGAAAGGACAGCCACCATTCGA
ACTAATTAAAGGTTGGGGCGAAGAATGCCTGCCCTACGGTGCCGCAACAC
TCAACAATCAACTCCTTCGCCTCCAGACAGCCGTCCAAACTGCCCTCGAG
CAAGCCTCCCTCCCTCCCTCCCTCCTCACCCCCCAACTGCTCGCCGCTTT
GCACGTCGAGCGTCTCGGGGACGTGTTACTCTTGGAAGATAATCACCCAT
TTCGCGATTCCCAAGCGTGGGGGAAAGCCTACCCCTTTCTCTGGCCCGCC
TTGCTGACCGTCTTTCCCGGGGCCACCCGGCTGGCGCGCATGGCACCCAT
CCAAGGAGGTACTAAGCGTCGGTCCCAGGTGCAGCTTCTTTACCCTCCCC
TCCCACCATCACCAGAAGCAGCAGAAGCAGCAGCCGCGTCTGCTGTTCCG
GGGCCAGGGTGCCCGGGTTGGGTGATGGTGCGTGAGAATGGGCTGAAGTA
CGGCTTCGACATGACCAAGTCGATGTTTTCCTCAGGCAACGTGTCAGAGA
AAGCACGGATAGCGCGGATGGATTGTCGGGGGGAGACAGTTGTGGATCTG
TACGCTGGAATTGGGTATTACACTTTGCCGCTGGCGGTGCATGGGAAGGC
GGAGAGGGTTCTGGCGTGTGAGTGGAACACGGACGCGATTGCGGCCTTGA
GGTTCAATCTCAGGGAAAATGGGGTGGAGGGGGTAGTGGAGGTGATAGAA
GGGGACAACCGGGTGACTACTCTTGGCTTGCCTGATATGATAGCACACCG
CGTACACCTGGGTTTGATCCCTAGTAGTGAAGAGGGGTGGCCCATTGCAG
TGCGTTTGTTAAGAGAGGAAGGAGGGATGCTGCATGTGCATGGGAATATG
TTGGAGGAAGCCGTTGAGGCGTGGGTTGAAAGGGTTAAGAGAGAGGTGGC
AGAAATAGGGAATGGATTGGGGAGGACCTGGGCGGGGAAGGGGGTGAAGT
GCGTGCATGTGGAGAGGGTCAAAAGCTATGCGCCGTCGGTGTGGCATTTT
GTGGCGGATGTGCAGTGTGGGGATGGGGGGGGGAAAGAGGACTGGAGGAA
GGGAACAGGATTAAACTGCTCTCGCTTGGTCAGAGAAAATGAGAAAAAAT
ACGCTTTAACGGAGGCTGGAATTAGGAGGCCTTGCTGAATGTGGGGAAGC
TGAGGGGATGGGTGGTAGGGATAGCAGAGGGCCATTTACTGAGGTGTCAA
TTTTGACAACAAAAGAAAAGATGAAAGAAAGAAGAAAGTTTGCATATAAA

Coding sequence (CDS) from alignment at scaffold_44:38973..40772-

>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Nanoce1779_2|609080|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_44:38973..40772- (Nannochloropsis oceanica)
ATGGCGTTTAAAAAGGTAGCCCTCCCTTCTCCTCCTCCTTGTCCTTGCCT
TCTAACCGATGCCTCTCATACGAAGCTCCTCAAAACGGCCTTGGAACGTG
CAGGTCTCTTTGATCGACAACGACGCATCGCTCAATCCACCTCCATTCCT
GGCTGTATGGCCATACCCATCCTACATCTCGAGGACGAAAGTGACACAAA
TACAACCAAGCCCCTCCTAGCCGAGCTCCAGGCGTGGTGCACCTCAACAT
CCGCCTCCGCACCTGCATCCCTACCCCACTCGCGTGCTCTGCGTCTCTTT
GTTGAAACCCTGAAAGGACAGCCACCATTCGAACTAATTAAAGGTTGGGG
CGAAGAATGCCTGCCCTACGGTGCCGCAACACTCAACAATCAACTCCTTC
GCCTCCAGACAGCCGTCCAAACTGCCCTCGAGCAAGCCTCCCTCCCTCCC
TCCCTCCTCACCCCCCAACTGCTCGCCGCTTTGCACGTCGAGCGTCTCGG
GGACGTGTTACTCTTGGAAGATAATCACCCATTTCGCGATTCCCAAGCGT
GGGGGAAAGCCTACCCCTTTCTCTGGCCCGCCTTGCTGACCGTCTTTCCC
GGGGCCACCCGGCTGGCGCGCATGGCACCCATCCAAGGAGGTACTAAGCG
TCGGTCCCAGGTGCAGCTTCTTTACCCTCCCCTCCCACCATCACCAGAAG
CAGCAGAAGCAGCAGCCGCGTCTGCTGTTCCGGGGCCAGGGTGCCCGGGT
TGGGTGATGGTGCGTGAGAATGGGCTGAAGTACGGCTTCGACATGACCAA
GTCGATGTTTTCCTCAGGCAACGTGTCAGAGAAAGCACGGATAGCGCGGA
TGGATTGTCGGGGGGAGACAGTTGTGGATCTGTACGCTGGAATTGGGTAT
TACACTTTGCCGCTGGCGGTGCATGGGAAGGCGGAGAGGGTTCTGGCGTG
TGAGTGGAACACGGACGCGATTGCGGCCTTGAGGTTCAATCTCAGGGAAA
ATGGGGTGGAGGGGGTAGTGGAGGTGATAGAAGGGGACAACCGGGTGACT
ACTCTTGGCTTGCCTGATATGATAGCACACCGCGTACACCTGGGTTTGAT
CCCTAGTAGTGAAGAGGGGTGGCCCATTGCAGTGCGTTTGTTAAGAGAGG
AAGGAGGGATGCTGCATGTGCATGGGAATATGTTGGAGGAAGCCGTTGAG
GCGTGGGTTGAAAGGGTTAAGAGAGAGGTGGCAGAAATAGGGAATGGATT
GGGGAGGACCTGGGCGGGGAAGGGGGTGAAGTGCGTGCATGTGGAGAGGG
TCAAAAGCTATGCGCCGTCGGTGTGGCATTTTGTGGCGGATGTGCAGTGT
GGGGATGGGGGGGGGAAAGAGGACTGGAGGAAGGGAACAGGATTAAACTG
CTCTCGCTTGGTCAGAGAAAATGAGAAAAAATACGCTTTAACGGAGGCTG
GAATTAGGAGGCCTTGCTGA

Synonyms

Publications