jgi.p|Nanoce1779_2|326528, mRNA_2338 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|326528
Unique Name	mRNA_2338
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1123
Alignment location	scaffold_5:90144..92146 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	326614
Track	FilteredModels2
ProteinId	326528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:90144..92146 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|326528	gene_2338	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|326528	mRNA_2338-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2338	CDS_2338	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:90144..92146+
coding sequence from alignment at scaffold_5:90144..92146+

mRNA sequence

>mRNA_2338 ID=mRNA_2338|Name=jgi.p|Nanoce1779_2|326528|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
CCTGCCTTCGCCACCGGACCGGACAGCGAGTGGGAAGAGTATGGCTTTCT
TACCTACGCTCACAATATGGCGTGTGCGGAAGGTGTTCTTTTCTGTACTC
CTGTTGGTCGAATGGGTGGACGGAAGGAGGACATAGCGCTCTTGTCGGAT
TCGACGGGGCAGGTATGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGG
AGGGCGTCGTTCTTAGTGATGTAATCAATGAATCAGTCAATCACTCACCA
TGCAACCTCACAAAAAAAGCAAGGAGGTGTCCCCCTCGTCCTCTTTCCTC
CCCCTTCTCCTCCTCCCCCTCCCCCCCCTCCCCTTCCATCCACCTCTCAC
CAGACGAGGGAAGGAGGGAAGGAGGGACGGAGGAAGGGACAGCCCCCGCT
GGTGATACTTTCTCCCCTGGACAATTTTATGGCCATGAATGTGTTCTTTG
AGAATAGAAGCCAGGTGCTGCAGTACGGAGTGCAGGGAAAGGTAAATTCC
CTTCCTCCCGGCTTCAGCAGCACCACCCTCCTCTCCCTCCATCTGCACTC
GAGCCCGACCCTGGCCGTAGAGGAGTGGGGCGGTGTTCTACGGTCGTACT
ACGGGACAAGGAAAGAGGGCGGGAGGGAGGGCGGAAGGGAGGAAGTGACG
AAGGATTATTTGAGCTACTACACCGACAACGGCGCCTATTACTACTACCT
GACTGAAGAGAACAAGACCTACGAGGAGACTCTCTTGGACCTTATCTCCT
ACTCTCAAGCCCAGAGCATCTCTTACAGCTCCCTGCAGATCGACTCCTGG
TGGTACTTCAAGGGCAGGGACAATGGGACCTCGACCTGGGAGGCGAAGCC
GGACGTGTTTCCCTCCGGACTCGAGGGCTTTCAGAGCGAGCTCCAGCTTC
CTCTGATCGCCCACAACAGGTGGTGGTCCGTCGAGACGCCCTATGCCTGC
CAGGTAGAAGGGGAGGGAGGGAGGGAGGGAGAGGGGGAGGGAGGGGAAAG
AAAGCTGCTTCTGTGCAGCCCGATTTGAATTCAACAGGTATAAGTACCAG
TATACACACGTATCCGTATACATACATACCTGTATACGCACGTAACTCCA
TGCACCCTTGTACTCATACACAC

protein sequence of jgi.p|Nanoce1779_2|326528

>mRNA_2338-protein ID=mRNA_2338-protein|Name=jgi.p|Nanoce1779_2|326528|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MNQSITHHATSQKKQGGVPLVLFPPPSPPPPPPPPLPSTSHQTREGGKEG
RRKGQPPLVILSPLDNFMAMNVFFENRSQVLQYGVQGKVNSLPPGFSSTT
LLSLHLHSSPTLAVEEWGGVLRSYYGTRKEGGREGGREEVTKDYLSYYTD
NGAYYYYLTEENKTYEETLLDLISYSQAQSISYSSLQIDSWWYFKGRDNG
TSTWEAKPDVFPSGLEGFQSELQLPLIAHNRWWSVETPYACQVEGEGGRE
GEGEGGERKLLLCSPI*

mRNA from alignment at scaffold_5:90144..92146+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2338 ID=mRNA_2338|Name=jgi.p|Nanoce1779_2|326528|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_5:90144..92146+ (Nannochloropsis oceanica)
CCTGCCTTCGCCACCGGACCGGACAGCGAGTGGGAAGAGTATGGCTTTCT
TACCTACGCTCACAATATGTAAGGAGGGAGGGAGGGAGGGAAGAAGGGAG
GGAAGGAAGGAGGGAGGGAAGGACGATCTCTTTCGGAGACACACGAATCA
TTCACTCATGCTCTCCCTCCTCCACCCCTCCTTTTATCCTTCTCTCCCTC
CCTCCACCTGTGTTTCCGAAGGGCGTGTGCGGAAGGTGTTCTTTTCTGTA
CTCCTGTTGGTCGAATGGGTGGACGGAAGGAGGACATAGCGCTCTTGTCG
GATTCGACGGGGCAGGTATGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGA
GGGAGGGCGTCGTTCTTAGTGATGTAATCAATGAATCAGTCAATCACTCA
CCATGCAACCTCACAAAAAAAGCAAGGAGGTGTCCCCCTCGTCCTCTTTC
CTCCCCCTTCTCCTCCTCCCCCTCCCCCCCCTCCCCTTCCATCCACCTCT
CACCAGACGAGGGAAGGAGGGAAGGAGGGACGGAGGAAGGGACAGCCCCC
GCTGGTGATACTTTCTCCCCTGGACAATTTTATGGCCATGAATGTGTTCT
TTGAGAATAGAAGCCAGGTGCTGCAGTACGGAGTGCAGGGAAAGGTAGGG
ACGAGGGGGGAAGGAGAGAGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGA
ATCGATTATTGTTATATATTCATTCCTCAGCATCTTGCCTTCACCCCTCC
TTCCCTCCCTCCCGCCCTTCCCCCCTCTTCAGGTAAATTCCCTTCCTCCC
GGCTTCAGCAGCACCACCCTCCTCTCCCTCCATCTGCACTCGAGCCCGAC
CCTGGCCGTAGAGGAGTGGGGCGGTGTTCTACGGTCGTACTACGGGACAA
GGAAAGAGGGCGGGAGGGAGGGCGGAAGGGAGGAAGTGACGAAGGATTAT
TTGAGCTACTACACCGACAACGGCGCCTATTACTACTACCTGACTGAAGA
GAACAAGGTGAGGAAGGAGGGGAGGGAGGGAGGGAAAGGAGGAGAGTCGG
TTGGGGACGCCCAATTCACACTGTACCCCTCCCTCCCTCCCTCTAGACCT
ACGAGGAGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATC
TCTTACAATTCACACTGTACCCCTCCCTCCCTCCCTCTAGACCTACGAGG
AGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCTTAC
AGCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGTAGGGAAGGAGGG
AGGGAAGGAGGGAGGGAGGGAGAAGCCATTCGTGACACACACATACCCCT
CTAAAAATTAACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACCCACACACACAC
ACCTCTGAAGGAAAGAGGGAAGAGGGGCGTACACAACATACATTTATACA
CACGCACATCCACCTTTCCTCCCTCCCTCCCTCCCTCTTTCAAACGACAC
GACAGGGCAGGGACAATGGGACCTCGACCTGGGAGGCGAAGCCGGACGTG
TTTCCCTCCGGACTCGAGGTAGGTCTTGTTCCCTCCCTCCCTCCCTTCCT
CCTTCCCTCCCTTCCTCCCCGTCTCTCCGAATTTCTCAATCTCCCTCCTT
CCCTCCCACTCCATCTTCTTCCCTTCTTCCCTCGCCCCCTGTTTTTGCAT
TGTAGGGCTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGG
TGGTGGTCCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGG
GAGGGAGGGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCC
CGATTTGAATTCAACAGGTATAAGTACCAGTATACACACGTATCCGTATA
CATACATACCTGTATACGCACGTAACTCCATGCACCCTTGTACTCATACA
CAC

Coding sequence (CDS) from alignment at scaffold_5:90144..92146+

>mRNA_2338 ID=mRNA_2338|Name=jgi.p|Nanoce1779_2|326528|organism=Nannochloropsis oceanica|type=CDS|length=4005bp|location=Sequence derived from alignment at scaffold_5:90144..92146+ (Nannochloropsis oceanica)
ATGAATCAGTCAATCACTCACCATGCAACCTCACAAAAAAAGCAAGGAGG
TGTCCCCCTCGTCCTCTTTCCTCCCCCTTCTCCTCCTCCCCCTCCCCCCC
CTCCCCTTCCATCCACCTCTCACCAGACGAGGGAAGGAGGGAAGGAGGGA
CGGAGGAAGGGACAGCCCCCGCTGGTGATACTTTCTCCCCTGGACAATTT
TATGGCCATGAATGTGTTCTTTGAGAATAGAAGCCAGGTGCTGCAGTACG
GAGTGCAGGGAAAGGTAAATTCCCTTCCTCCCGGCTTCAGCAGCACCACC
CTCCTCTCCCTCCATCTGCACTCGAGCCCGACCCTGGCCGTAGAGGAGTG
GGGCGGTGTTCTACGGTCGTACTACGGGACAAGGAAAGAGGGCGGGAGGG
AGGGCGGAAGGGAGGAAGTGACGAAGGATTATTTGAGCTACTACACCGAC
AACGGCGCCTATTACTACTACCTGACTGAAGAGAACAAGACCTACGAGGA
GACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCTTACA
GCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGGCAGGGACAATGGG
ACCTCGACCTGGGAGGCGAAGCCGGACGTGTTTCCCTCCGGACTCGAGGG
CTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGGTGGTGGT
CCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGGGAGGGAG
GGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCCCGATTTG
AATGAATCAGTCAATCACTCACCATGCAACCTCACAAAAAAAGCAAGGAG
GTGTCCCCCTCGTCCTCTTTCCTCCCCCTTCTCCTCCTCCCCCTCCCCCC
CCTCCCCTTCCATCCACCTCTCACCAGACGAGGGAAGGAGGGAAGGAGGG
ACGGAGGAAGGGACAGCCCCCGCTGGTGATACTTTCTCCCCTGGACAATT
TTATGGCCATGAATGTGTTCTTTGAGAATAGAAGCCAGGTGCTGCAGTAC
GGAGTGCAGGGAAAGGTAAATTCCCTTCCTCCCGGCTTCAGCAGCACCAC
CCTCCTCTCCCTCCATCTGCACTCGAGCCCGACCCTGGCCGTAGAGGAGT
GGGGCGGTGTTCTACGGTCGTACTACGGGACAAGGAAAGAGGGCGGGAGG
GAGGGCGGAAGGGAGGAAGTGACGAAGGATTATTTGAGCTACTACACCGA
CAACGGCGCCTATTACTACTACCTGACTGAAGAGAACAAGACCTACGAGG
AGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCTTAC
AGCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGGCAGGGACAATGG
GACCTCGACCTGGGAGGCGAAGCCGGACGTGTTTCCCTCCGGACTCGAGG
GCTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGGTGGTGG
TCCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGGGAGGGA
GGGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCCCGATTT
GAATGAATCAGTCAATCACTCACCATGCAACCTCACAAAAAAAGCAAGGA
GGTGTCCCCCTCGTCCTCTTTCCTCCCCCTTCTCCTCCTCCCCCTCCCCC
CCCTCCCCTTCCATCCACCTCTCACCAGACGAGGGAAGGAGGGAAGGAGG
GACGGAGGAAGGGACAGCCCCCGCTGGTGATACTTTCTCCCCTGGACAAT
TTTATGGCCATGAATGTGTTCTTTGAGAATAGAAGCCAGGTGCTGCAGTA
CGGAGTGCAGGGAAAGGTAAATTCCCTTCCTCCCGGCTTCAGCAGCACCA
CCCTCCTCTCCCTCCATCTGCACTCGAGCCCGACCCTGGCCGTAGAGGAG
TGGGGCGGTGTTCTACGGTCGTACTACGGGACAAGGAAAGAGGGCGGGAG
GGAGGGCGGAAGGGAGGAAGTGACGAAGGATTATTTGAGCTACTACACCG
ACAACGGCGCCTATTACTACTACCTGACTGAAGAGAACAAGACCTACGAG
GAGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCTTA
CAGCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGGCAGGGACAATG
GGACCTCGACCTGGGAGGCGAAGCCGGACGTGTTTCCCTCCGGACTCGAG
GGCTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGGTGGTG
GTCCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGGGAGGG
AGGGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCCCGATT
TGAATGAATCAGTCAATCACTCACCATGCAACCTCACAAAAAAAGCAAGG
AGGTGTCCCCCTCGTCCTCTTTCCTCCCCCTTCTCCTCCTCCCCCTCCCC
CCCCTCCCCTTCCATCCACCTCTCACCAGACGAGGGAAGGAGGGAAGGAG
GGACGGAGGAAGGGACAGCCCCCGCTGGTGATACTTTCTCCCCTGGACAA
TTTTATGGCCATGAATGTGTTCTTTGAGAATAGAAGCCAGGTGCTGCAGT
ACGGAGTGCAGGGAAAGGTAAATTCCCTTCCTCCCGGCTTCAGCAGCACC
ACCCTCCTCTCCCTCCATCTGCACTCGAGCCCGACCCTGGCCGTAGAGGA
GTGGGGCGGTGTTCTACGGTCGTACTACGGGACAAGGAAAGAGGGCGGGA
GGGAGGGCGGAAGGGAGGAAGTGACGAAGGATTATTTGAGCTACTACACC
GACAACGGCGCCTATTACTACTACCTGACTGAAGAGAACAAGACCTACGA
GGAGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCTT
ACAGCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGGCAGGGACAAT
GGGACCTCGACCTGGGAGGCGAAGCCGGACGTGTTTCCCTCCGGACTCGA
GGGCTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGGTGGT
GGTCCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGGGAGG
GAGGGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCCCGAT
TTGAATGAATCAGTCAATCACTCACCATGCAACCTCACAAAAAAAGCAAG
GAGGTGTCCCCCTCGTCCTCTTTCCTCCCCCTTCTCCTCCTCCCCCTCCC
CCCCCTCCCCTTCCATCCACCTCTCACCAGACGAGGGAAGGAGGGAAGGA
GGGACGGAGGAAGGGACAGCCCCCGCTGGTGATACTTTCTCCCCTGGACA
ATTTTATGGCCATGAATGTGTTCTTTGAGAATAGAAGCCAGGTGCTGCAG
TACGGAGTGCAGGGAAAGGTAAATTCCCTTCCTCCCGGCTTCAGCAGCAC
CACCCTCCTCTCCCTCCATCTGCACTCGAGCCCGACCCTGGCCGTAGAGG
AGTGGGGCGGTGTTCTACGGTCGTACTACGGGACAAGGAAAGAGGGCGGG
AGGGAGGGCGGAAGGGAGGAAGTGACGAAGGATTATTTGAGCTACTACAC
CGACAACGGCGCCTATTACTACTACCTGACTGAAGAGAACAAGACCTACG
AGGAGACTCTCTTGGACCTTATCTCCTACTCTCAAGCCCAGAGCATCTCT
TACAGCTCCCTGCAGATCGACTCCTGGTGGTACTTCAAGGGCAGGGACAA
TGGGACCTCGACCTGGGAGGCGAAGCCGGACGTGTTTCCCTCCGGACTCG
AGGGCTTTCAGAGCGAGCTCCAGCTTCCTCTGATCGCCCACAACAGGTGG
TGGTCCGTCGAGACGCCCTATGCCTGCCAGGTAGAAGGGGAGGGAGGGAG
GGAGGGAGAGGGGGAGGGAGGGGAAAGAAAGCTGCTTCTGTGCAGCCCGA
TTTGA

Synonyms

Publications