jgi.p|Nanoce1779_2|611757, mRNA_10718 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611757
Unique Name	mRNA_10718
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2833
Alignment location	scaffold_58:82337..85596 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	611843
Track	FilteredModels2
ProteinId	611757

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:82337..85596 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611757	gene_10718	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611757	mRNA_10718-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10718	CDS_10718	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_58:82337..85596+
coding sequence from alignment at scaffold_58:82337..85596+

mRNA sequence

>mRNA_10718 ID=mRNA_10718|Name=jgi.p|Nanoce1779_2|611757|organism=Nannochloropsis oceanica|type=mRNA|length=2833bp
ATAAAGATTAGTGCTGCGGAGCTGGCGGCTGCGTCGGAGGAGGAAGGCGA
GGGTATGGAGTCAGTCCTGGCCATACTCTGCGACGGCTGTGACGGTGAAT
TCGTCCTGGACGAGGTCGGGCTTGAGGAAGTGCCCGAGGGCGATTGGTTT
TGTCGAGTCTGCCGCCCTCTCTCCCTGCCTCCTGCTGCAGCTGCTGCGGC
CCCGCCGGCGGCAGCTGCTGCTGGTGGTGGTGGTGGTAGAGGGCGGAGGA
GAGCCCCAGCCATTGCTGTGTCGATGCCGGTGCCTGTGTCCACGCGTGGA
GGAAAGGGGAGGAAGAAGAATGACGAGATGGAGAAGGAAGAGAAGAAGGA
AGCTGTGCCGAAGGTGGGAGGAAGGGGGAGAGGGAGGAAGAAGAAGGAGG
CGGTGGAAAATGAGAAAAAGGAAGAGAAAGAGGAGGAGCAGCAGCAGCCG
AAGAAGCGGGCGGTCACCCGAGCGACCCGTGGAAAGGCGGCTGTACCGGC
ACCAGCGACGGCAGCCAAGGCTGATAAAAGCAGCAGCACCAGCAGCAAGA
CGATGAAGACTACAATCGCCAGAACGGTGCGCGGTAAGGCTGCGTCAGTC
GAGGTCCCTTCCTCCACTGATTCCTCTGCCCCTACTACCAGGGCGACGCG
CAGCACACGTAGCTCGTCTCGGCGGTAAAAGAGGGAAAAGAGAAAGAAGA
GGGAGGGATGGAGGGACGGGAGTGATTACGAGCGGAGGCCTCGAGCAAGG
CCAGGATTTGTGACTGTGGAAGATGGCCAGATTGCCCAGTACAAAATTAT
AAGTTAAATTGAAGAGAGACAGCAAAAAGAAGTAGAGAGGTATGACCCAG
CGGAAGAATAGAAAAGAAACGGGAAAAAGAAAGAAGCGCTGTATGTCTGA
CGGGAGAAAGGCTGCCGAAGAGGAGAAGGGGAAAATAGTTATCCAACTGA
AACAAAACGAAAGGGAGCGGAGCGAGGTGGAGGCAAGATGATTGTCCGAC
ATATATTTGGGTTTCAAATAAAAAAGAGAAAAGGGGGGAAAATGTTGATC
GAACAACGTCGATGTCGTAGATGGCTAAGAGGAGATGACATTCAAGCAAG
AACAGTTTATCAGAGGCATAGGTGTCGGTGTGGATGTTGGTGTGTGTCTC
GCTTGCAGGCGCATGTTGCCAGATGTCTCACGACGTGAGGAGGCTTTTAA
ATGAGATTCTTGAGCATCAAGGAGGAGGAAAAAACCAAAAAAGTGGCTCA
TACTGGAGGGGTTCAAGGGGCAGAGAAAGAGAAGAAGGGCCGAGGGAAAG
TGCCATCGTAAGATGACGGGATATGTATCACTTGAAACAAATCAAAAACG
GAAAAACTGGACCAAGAAATTAAAAAATTGCTCGTGCTACTTAAACGATC
CGATCCCTCATTCCTCTTATGCGTGCATAAGCCAATTTCGTTGTCCTCAC
CTCTTTTCCCCAAGAGCATGAGGTGTGGAAAAACATGGTGATGCTGGGAA
AGGGACGGGGGGAAGAATGGAAGGAGCAAATGTGGCAGAAATGGAACACA
AAACTAAAAATAATCTGTACACATACACACGTATAACACAACTACACATA
AAATGAATGACATGGGGAAATGGAGATAGCACTTCGCCTCCCTAACCCTT
ACCCCCCCACTGGAAGCTCAACACAGGAGAAAGCCAAGGAAAGGAGGGAT
CACACACAAACACGCACACACACAATGAAGATGACAAAAAGACTCTTACT
AGCCCTTTTGGCTTCCTCTTCCCCCGCTCTAGGTTTTTTTTAGAAAACCT
TTCGCCTTTGATGTCATTCTCCCTGTGTACGTGTGGTGGTGGCCCATGCT
CAAACATTTTGAAGTCAACCGCCGGAGAAAGCAATCCCGTCATTTCTTCC
GAATTGTGTTTCCAGACATACAAGCCCACACCCGAATCTTCGGGATAGTG
TGCTCAACTATTCGTTCATCTGGCTATGGGCCGGCTCTTGGTATTGTTGG
ATGGACGGACTGGGCGTGCATTGCTCGCTCGGAGTTTACGCCTTTCCTTC
TTACCCTCCTCCTCCCCCCCTACATGAGCCGCTTCCACACCTTTACACCA
CACACCGATAGAACACAATAGCAATTGTATTTGCCCTCTTTGTCTGGTGT
AAGGTCAATCATGGCAACGGAGGTCTCCTTCCTCCTGACTGTCATCGCCC
TGCTACCCAGGGTCCTCGCCACCAGCGCCGTCACTTTCCTGTGCCTGTGG
GTGGGCAAGCACTGCTTTATCTTCCTCCAGGGCTTCTACATGGTCCGCCA
CCTTCCCCACATCTACCAGTACTGCGACATCTTTTCCAGCGTGGGCTTAC
TATTCCCCTTCTTGCTCAAGTACAGGTCCAACTTCTACGAAATCGCCCCC
GAGCTATTTGAATCGCTACAGACCCCCTTGTTTGCTTTCATCTCTTCCAA
AAACGTTACTATCCACATCAACGATGCGCATCTAATCCGGGAAGTCTGCA
TTGGCAAGCGGAGGAGCTTTCCCAAGGCCGTTCACATGTATGACACAGTC
AGGGTGTTCGGGGAGAACATCGTGACGACAGAGGGAGAGGTCTGGAGGCG
GCACAGGTTTGTGGCGCGCGCGGCCTTCAGCGAGGCTAACAACCGGTTGG
TGTTTGAGACGGTCCAGGCGTGTGCGGGAGAGATGATGGACGCCTGGGAG
AGGCAGAGGGAGGGAGGGAAAGAGAAAGGGCAGAACGAGGGAGGGAATAA
TGAAGGCTTTCGGGTGACATTGATGGAGGATATGACGCAACTGACCTTGG
CCGTCATTAGCCAGGCCAGCTTTGGGCTTCAGC

protein sequence of jgi.p|Nanoce1779_2|611757

>mRNA_10718-protein ID=mRNA_10718-protein|Name=jgi.p|Nanoce1779_2|611757|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MESVLAILCDGCDGEFVLDEVGLEEVPEGDWFCRVCRPLSLPPAAAAAAP
PAAAAAGGGGGRGRRRAPAIAVSMPVPVSTRGGKGRKKNDEMEKEEKKEA
VPKVGGRGRGRKKKEAVENEKKEEKEEEQQQPKKRAVTRATRGKAAVPAP
ATAAKADKSSSTSSKTMKTTIARTVRGKAASVEVPSSTDSSAPTTRATRS
TRSSSRR*

mRNA from alignment at scaffold_58:82337..85596+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10718 ID=mRNA_10718|Name=jgi.p|Nanoce1779_2|611757|organism=Nannochloropsis oceanica|type=mRNA|length=3260bp|location=Sequence derived from alignment at scaffold_58:82337..85596+ (Nannochloropsis oceanica)
ATAAAGATTAGTGCTGCGGAGCTGGCGGCTGCGTCGGAGGAGGAAGGCGA
GGTAAGCTGAATCTTTACAGCGACGTCGTGCTCCCCCCCCCCCCCTCTTT
CTCTTTCCAGGAGCCTCTTATCCTCTGAAGCGACGGCCTCTCTCACCTCC
CTCTCCTCTCTCCCCTCCCTCTCTTTGATCCCCCCTCCCTATCCCCAGGG
TATGGAGTCAGTCCTGGCCATACTCTGCGACGGCTGTGACGGTGAATTCG
TCCTGGACGAGGTCGGGCTTGAGGAAGTGCCCGAGGGCGATTGGTTTTGT
CGAGTCTGCCGCCCTCTCTCCCTGCCTCCTGCTGCAGCTGCTGCGGCCCC
GCCGGCGGCAGCTGCTGCTGGTGGTGGTGGTGGTAGAGGGCGGAGGAGAG
CCCCAGCCATTGCTGTGTCGATGCCGGTGCCTGTGTCCACGCGTGGAGGA
AAGGGGAGGAAGAAGAATGACGAGATGGAGAAGGAAGAGAAGAAGGAAGC
TGTGCCGAAGGTGGGAGGAAGGGGGAGAGGGAGGAAGAAGAAGGAGGCGG
TGGAAAATGAGAAAAAGGAAGAGAAAGAGGAGGAGCAGCAGCAGCCGAAG
AAGCGGGCGGTCACCCGAGCGACCCGTGGAAAGGCGGCTGTACCGGCACC
AGCGACGGCAGCCAAGGCTGATAAAAGCAGCAGCACCAGCAGCAAGACGA
TGAAGACTACAATCGCCAGAACGGTGCGCGGTAAGGCTGCGTCAGTCGAG
GTCCCTTCCTCCACTGATTCCTCTGCCCCTACTACCAGGGCGACGCGCAG
CACACGTAGCTCGTCTCGGCGGTAAAAGAGGGAAAAGAGAAAGAAGAGGG
AGGGATGGAGGGACGGGAGTGATTACGAGCGGAGGCCTCGAGCAAGGCCA
GGATTTGTGACTGTGGAAGATGGCCAGATTGCCCAGTACAAAATTATAAG
TTAAATTGAAGAGAGACAGCAAAAAGAAGTAGAGAGGTATGACCCAGCGG
AAGAATAGAAAAGAAACGGGAAAAAGAAAGAAGCGCTGTATGTCTGACGG
GAGAAAGGCTGCCGAAGAGGAGAAGGGGAAAATAGTTATCCAACTGAAAC
AAAACGAAAGGGAGCGGAGCGAGGTGGAGGCAAGATGATTGTCCGACATA
TATTTGGGTTTCAAATAAAAAAGAGAAAAGGGGGGAAAATGTTGATCGAA
CAACGTCGATGTCGTAGATGGCTAAGAGGAGATGACATTCAAGCAAGAAC
AGTTTATCAGAGGCATAGGTGTCGGTGTGGATGTTGGTGTGTGTCTCGCT
TGCAGGCGCATGTTGCCAGATGTCTCACGACGTGAGGAGGCTTTTAAATG
AGATTCTTGAGCATCAAGGAGGAGGAAAAAACCAAAAAAGTGGCTCATAC
TGGAGGGGTTCAAGGGGCAGAGAAAGAGAAGAAGGGCCGAGGGAAAGTGC
CATCGTAAGATGACGGGATATGTATCACTTGAAACAAATCAAAAACGGAA
AAACTGGACCAAGAAATTAAAAAATTGCTCGTGCTACTTAAACGATCCGA
TCCCTCATTCCTCTTATGCGTGCATAAGCCAATTTCGTTGTCCTCACCTC
TTTTCCCCAAGAGCATGAGGTGTGGAAAAACATGGTGATGCTGGGAAAGG
GACGGGGGGAAGAATGGAAGGAGCAAATGTGGCAGAAATGGAACACAAAA
CTAAAAATAATCTGTACACATACACACGTATAACACAACTACACATAAAA
TGAATGACATGGGGAAATGGAGATAGCACTTCGCCTCCCTAACCCTTACC
CCCCCACTGGAAGCTCAACACAGGAGAAAGCCAAGGAAAGGAGGGATCAC
ACACAAACACGCACACACACAATGAAGATGACAAAAAGACTCTTACTAGC
CCTTTTGGCTTCCTCTTCCCCCGCTCTAGGTTTTTTTTAGAAAACCTTTC
GCCTTTGATGTCATTCTCCCTGTGTACGTGTGGTGGTGGCCCATGCTCAA
ACATTTTGAAGTCAACCGCCGGAGAAAGCAATCCCGTCATTTCTTCCGAA
TTGTGTTTCCAGACATACAAGCCCACACCCGAATCTTCGGGATAGTGTGC
TCAACTATTCGTTCATCTGGCTATGGGCCGGCTCTTGGTATTGTTGGATG
GACGGACTGGGCGTGCATTGCTCGCTCGGAGTTTACGCCTTTCCTTCTTA
CCCTCCTCCTCCCCCCCTACATGAGCCGCTTCCACACCTTTACACCACAC
ACCGATAGAACACAATAGCAATTGTATTTGCCCTCTTTGTCTGGTGTAAG
GTCAATCATGGCAACGGAGGTCTCCTTCCTCCTGACTGTCATCGCCCTGC
TACCCAGGGTCCTCGCCACCAGCGCCGTCACTTTCCTGTGCCTGTGGGTG
GGCAAGCACTGCTTTATCTTCCTCCAGGGCTTCTACATGGTCAGTAAAAG
GCATATCCTACTCATGGAAAGAGGAGGGAAATGGCTGGGAGGGAATGTGT
TCGGAAACCGCGGGCTGGCTCTATAATGTGATGCTTCAAGGTTGACTTCC
TTCTCACACACATATGGCTATCCTTTGCACAGCGCTCCCATCAAGGATGC
TGACTACAGAGTCTATGTCCTTACCCATCTACACTAGTAATCTATTAAAT
TGATAACATTCCCTCTCCTCTCCCCTCTATCGCCTTCCTTTTCTCCACTC
CGTCCCCTTCCACCACAAGGTCCGCCACCTTCCCCACATCTACCAGTACT
GCGACATCTTTTCCAGCGTGGGCTTACTATTCCCCTTCTTGCTCAAGTAC
AGGTCCAACTTCTACGAAATCGCCCCCGAGCTATTTGAATCGCTACAGAC
CCCCTTGTTTGCTTTCATCTCTTCCAAAAACGTTACTATCCACATCAACG
ATGCGCATCTAATCCGGGAAGTCTGCATTGGCAAGCGGAGGAGCTTTCCC
AAGGCCGTTCACATGTATGACACAGTCAGGGTGTTCGGGGAGAACATCGT
GACGACAGAGGGAGAGGTCTGGAGGCGGCACAGGTTTGTGGCGCGCGCGG
CCTTCAGCGAGGCTAACAACCGGTTGGTGTTTGAGACGGTCCAGGCGTGT
GCGGGAGAGATGATGGACGCCTGGGAGAGGCAGAGGGAGGGAGGGAAAGA
GAAAGGGCAGAACGAGGGAGGGAATAATGAAGGCTTTCGGGTGACATTGA
TGGAGGATATGACGCAACTGACCTTGGCCGTCATTAGCCAGGCCAGCTTT
GGGCTTCAGC

Coding sequence (CDS) from alignment at scaffold_58:82337..85596+

>mRNA_10718 ID=mRNA_10718|Name=jgi.p|Nanoce1779_2|611757|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_58:82337..85596+ (Nannochloropsis oceanica)
ATGGAGTCAGTCCTGGCCATACTCTGCGACGGCTGTGACGGTGAATTCGT
CCTGGACGAGGTCGGGCTTGAGGAAGTGCCCGAGGGCGATTGGTTTTGTC
GAGTCTGCCGCCCTCTCTCCCTGCCTCCTGCTGCAGCTGCTGCGGCCCCG
CCGGCGGCAGCTGCTGCTGGTGGTGGTGGTGGTAGAGGGCGGAGGAGAGC
CCCAGCCATTGCTGTGTCGATGCCGGTGCCTGTGTCCACGCGTGGAGGAA
AGGGGAGGAAGAAGAATGACGAGATGGAGAAGGAAGAGAAGAAGGAAGCT
GTGCCGAAGGTGGGAGGAAGGGGGAGAGGGAGGAAGAAGAAGGAGGCGGT
GGAAAATGAGAAAAAGGAAGAGAAAGAGGAGGAGCAGCAGCAGCCGAAGA
AGCGGGCGGTCACCCGAGCGACCCGTGGAAAGGCGGCTGTACCGGCACCA
GCGACGGCAGCCAAGGCTGATAAAAGCAGCAGCACCAGCAGCAAGACGAT
GAAGACTACAATCGCCAGAACGGTGCGCGGTAAGGCTGCGTCAGTCGAGG
TCCCTTCCTCCACTGATTCCTCTGCCCCTACTACCAGGGCGACGCGCAGC
ACACGTAGCTCGTCTCGGCGGTAA

Synonyms

Publications