jgi.p|Nanoce1779_2|582580, mRNA_3554 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582580
Unique NamemRNA_3554
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length984
Alignment locationscaffold_6:640160..641143 +

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Properties
Property NameValue
TranscriptId582666
TrackFilteredModels2
ProteinId582580
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:640160..641143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582580gene_3554Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582580mRNA_3554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3554CDS_3554Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Nanoce1779_2|582580|organism=Nannochloropsis oceanica|type=mRNA|length=984bp
CAGGCGCGCACACGCCGACTTCGCGCCCCGAGTCGCATGGCAGCCCCAAC
TACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCAGCCACCGCCTCAAA
TGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGCAGCAGACACCCACG
ACGACGGCTGCCCACGACTATGATGACGCCTATTACCGCACGCTGCTCAA
CCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGGCCCCGGCCTGGCGA
CCCTTCACGATGTGAGGCATGATGAAGATGAAGGGGAGGCCGCGGCGGCA
GCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTAATATCGCATACCGT
GCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACACCTTTACACGACCCC
TAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGGTCTTCTTCATGAGC
GTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTCTTGGTGGTGGCTAC
TATTTTGAATGCCTTTCACTATGGCCAACGCCGGGCGTTCTTCCGCTTTC
AAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCGGCATGATTTCGACA
TTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGTGGGGCGGAGGGTTT
GCATCATGAAGTGGGGGTGGCAATTACCACCTACCTCTTCGGTTTTCTCC
TTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGCGCCAGCGCCACCGA
CAGGAGGGAGAAGATCCATTGCGATGCCAACGACAAACGAGAAGGGCTGC
GGGGGGCAATCATTTTGAAGAATATAGTATCTTGTAAAATTAAGTCGACC
CTGAAGTATACAGCAACTATATATATGATGGCGGGCAGACAGGCGAATCA
ACTTCCCCTTCCGTGAAGTGTTGTACATGCATATCATCTAATTTCCAATT
CTATTTTCTTTTCTTTTTACTTTCTCTATTTGTG
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protein sequence of jgi.p|Nanoce1779_2|582580

>mRNA_3554-protein ID=mRNA_3554-protein|Name=jgi.p|Nanoce1779_2|582580|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAAPTTLSSTTLARQHQPPPQMPPPAILPRPQPQQTPTTTAAHDYDDAYY
RTLLNHVNAQVSLAHPGPGLATLHDVRHDEDEGEAAAAASPPATLCVWLL
ISHTVLGTCWHLEVENTFTRPLKIYFFLSSLLLVFFMSVKIRLATTFAEF
LVVATILNAFHYGQRRAFFRFQTSLFLWPFFALGMISTLGIWDLVLVVQS
GAEGLHHEVGVAITTYLFGFLLPEVLGRAVQWQRQRHRQEGEDPLRCQRQ
TRRAAGGNHFEEYSIL*
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mRNA from alignment at scaffold_6:640160..641143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Nanoce1779_2|582580|organism=Nannochloropsis oceanica|type=mRNA|length=984bp|location=Sequence derived from alignment at scaffold_6:640160..641143+ (Nannochloropsis oceanica)
CAGGCGCGCACACGCCGACTTCGCGCCCCGAGTCGCATGGCAGCCCCAAC
TACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCAGCCACCGCCTCAAA
TGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGCAGCAGACACCCACG
ACGACGGCTGCCCACGACTATGATGACGCCTATTACCGCACGCTGCTCAA
CCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGGCCCCGGCCTGGCGA
CCCTTCACGATGTGAGGCATGATGAAGATGAAGGGGAGGCCGCGGCGGCA
GCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTAATATCGCATACCGT
GCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACACCTTTACACGACCCC
TAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGGTCTTCTTCATGAGC
GTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTCTTGGTGGTGGCTAC
TATTTTGAATGCCTTTCACTATGGCCAACGCCGGGCGTTCTTCCGCTTTC
AAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCGGCATGATTTCGACA
TTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGTGGGGCGGAGGGTTT
GCATCATGAAGTGGGGGTGGCAATTACCACCTACCTCTTCGGTTTTCTCC
TTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGCGCCAGCGCCACCGA
CAGGAGGGAGAAGATCCATTGCGATGCCAACGACAAACGAGAAGGGCTGC
GGGGGGCAATCATTTTGAAGAATATAGTATCTTGTAAAATTAAGTCGACC
CTGAAGTATACAGCAACTATATATATGATGGCGGGCAGACAGGCGAATCA
ACTTCCCCTTCCGTGAAGTGTTGTACATGCATATCATCTAATTTCCAATT
CTATTTTCTTTTCTTTTTACTTTCTCTATTTGTG
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Coding sequence (CDS) from alignment at scaffold_6:640160..641143+

>mRNA_3554 ID=mRNA_3554|Name=jgi.p|Nanoce1779_2|582580|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_6:640160..641143+ (Nannochloropsis oceanica)
ATGGCAGCCCCAACTACCCTCTCCTCTACTACTTTGGCAAGGCAGCATCA
GCCACCGCCTCAAATGCCACCTCCCGCAATTCTGCCACGTCCGCAACCGC
AGCAGACACCCACGACGACGGCTGCCCACGACTATGATGACGCCTATTAC
CGCACGCTGCTCAACCACGTGAATGCGCAAGTCTCCTTGGCGCATCCCGG
CCCCGGCCTGGCGACCCTTCACGATGTGAGGCATGATGAAGATGAAGGGG
AGGCCGCGGCGGCAGCGTCACCCCCGGCGACGCTCTGTGTCTGGCTGCTA
ATATCGCATACCGTGCTGGGTACCTGCTGGCATTTGGAAGTGGAAAACAC
CTTTACACGACCCCTAAAGATCTATTTTTTCCTCTCGTCACTTCTGTTGG
TCTTCTTCATGAGCGTCAAGATCCGCCTGGCCACCACCTTTGCTGAGTTC
TTGGTGGTGGCTACTATTTTGAATGCCTTTCACTATGGCCAACGCCGGGC
GTTCTTCCGCTTTCAAACCTCCCTCTTCCTCTGGCCCTTCTTCGCCCTCG
GCATGATTTCGACATTAGGTATTTGGGATTTGGTTTTGGTGGTACAGAGT
GGGGCGGAGGGTTTGCATCATGAAGTGGGGGTGGCAATTACCACCTACCT
CTTCGGTTTTCTCCTTCCGGAGGTCCTGGGTCGGGCTGTCCAGTGGCAGC
GCCAGCGCCACCGACAGGAGGGAGAAGATCCATTGCGATGCCAACGACAA
ACGAGAAGGGCTGCGGGGGGCAATCATTTTGAAGAATATAGTATCTTGTA
A
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Synonyms
Publications