jgi.p|Nanoce1779_2|582153, mRNA_3448 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582153
Unique NamemRNA_3448
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1402
Alignment locationscaffold_6:351883..353284 +

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Properties
Property NameValue
TranscriptId582239
TrackFilteredModels2
ProteinId582153
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:351883..353284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582153gene_3448Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582153mRNA_3448-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3448CDS_3448Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3448 ID=mRNA_3448|Name=jgi.p|Nanoce1779_2|582153|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
ACGAGTGACTCCTCAACCTCGATACCCAACGCCACTTTTGATAATGACGC
CGCTGCTGCTCCATTGCCGGCCTCCTTCACTCCTGCCCGCACAGTTTCCG
TCGCGTTTACTGAAGTGGGCAACCAAATGGGAGAGGTAGACAATTTCGAA
GACCGCCTTCTCTCCGCCACCGCCACAGATGGCACGCTCAGCTTATCACT
ACGAACATATCTGAAAACAGTCGCCTCTTCCTCCTCCTACTTCTCCTCTC
CCGCGGCATCGTCAAAAGCCGCCACCTCTGTCTGGGAGCCAACCGAGATT
CTAGAATTGAATCTACAGGCGATGGGTGCCCTGGTACTTGGGCCTTTTCA
AGCCATCTTTTGGATGATGAGTATTTGCAAAAACGAATTGATGGACGTTC
TGAGGATCAATAAGCACAAGACACACCACTGGAGTGCTGCCGATGCTGCA
GCTGCTCCTGCTACCGCTGTTACGACTACAGCTGCTGTTGCGTTCGAAAA
GGGCGGATGGGTAGGTGCGATGAAATGGGTGGTCGACGCGATTGCTCGTG
GCCCGTATACGGCTATGGCTTTGCTTCGTCCTGAGACAATTCCTAATGCC
CCTGAACGGATGGAGGCCGCCTTGTTAAGGTTTGCAGTGGAGAAGGTGGA
AGGGGAGGTTGAGAGGAAGTTAGGGCGGATGGACGAGTTGAGAGAGGCCT
TGGTTGAAACGTGGTATAGTGCAGTGAAAGGGGATGAGGGGGTATTTCGT
ACGTGGAAGGACAAGTGCTTCGAGAAACAAGATAAGGATTTTGCGTATAA
AATTTGTCCTTTCAAGGAGGTGAAGCAGAATTATTTGTTGGTGGGGAAAT
GGACAGGGTGGATTCAGAGGGATGACGGGATTGGAAGTAAGGATGGAGCA
GGGCCTGTGATGTACTTTACGGAAGGACAGCAGTGTTGGAATGGGCCGAA
GAGGACAGCTCTCGTGCAATTATGGTGTGGCCCGGAGGAGGCGGTTGTAG
AGGTGACGGAGCCGAGTGTGTGTTTGTATGACTTTGTGATGACGACACCG
TTGGTCTGCGATGAGGTGGTAGTGAAGGAGGCGGAAGAGAGGCTGAGGAG
GATGGGGGTAAAGTTGCCCGGAGATGATGCATGGGAAGGGGTGGAGTTCC
GGGAGGAGGGAGGGGGAGGTAGAATAGAAAGGGAGGAATTGTGATACGCT
TGAAAAATGAATTAAAAGCAGAAAACAGAACAGAAAAACATCTGCGGGGG
CATCGAGAGCTTGTCTGAGGCCTTGCGTTTCAAAACGAGTGCCTGAGAGC
ACGTGTGCTTCTCGGCTGCTCGGAGTCATGTCCATAAAGCTCCGGCTGCT
CTAAAAACCCGAGTCAAAAGGACAGCCGCTTTGCATCAGAGGTGCACTTT
GA
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protein sequence of jgi.p|Nanoce1779_2|582153

>mRNA_3448-protein ID=mRNA_3448-protein|Name=jgi.p|Nanoce1779_2|582153|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MGEVDNFEDRLLSATATDGTLSLSLRTYLKTVASSSSYFSSPAASSKAAT
SVWEPTEILELNLQAMGALVLGPFQAIFWMMSICKNELMDVLRINKHKTH
HWSAADAAAAPATAVTTTAAVAFEKGGWVGAMKWVVDAIARGPYTAMALL
RPETIPNAPERMEAALLRFAVEKVEGEVERKLGRMDELREALVETWYSAV
KGDEGVFRTWKDKCFEKQDKDFAYKICPFKEVKQNYLLVGKWTGWIQRDD
GIGSKDGAGPVMYFTEGQQCWNGPKRTALVQLWCGPEEAVVEVTEPSVCL
YDFVMTTPLVCDEVVVKEAEERLRRMGVKLPGDDAWEGVEFREEGGGGRI
EREEL*
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mRNA from alignment at scaffold_6:351883..353284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3448 ID=mRNA_3448|Name=jgi.p|Nanoce1779_2|582153|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_6:351883..353284+ (Nannochloropsis oceanica)
ACGAGTGACTCCTCAACCTCGATACCCAACGCCACTTTTGATAATGACGC
CGCTGCTGCTCCATTGCCGGCCTCCTTCACTCCTGCCCGCACAGTTTCCG
TCGCGTTTACTGAAGTGGGCAACCAAATGGGAGAGGTAGACAATTTCGAA
GACCGCCTTCTCTCCGCCACCGCCACAGATGGCACGCTCAGCTTATCACT
ACGAACATATCTGAAAACAGTCGCCTCTTCCTCCTCCTACTTCTCCTCTC
CCGCGGCATCGTCAAAAGCCGCCACCTCTGTCTGGGAGCCAACCGAGATT
CTAGAATTGAATCTACAGGCGATGGGTGCCCTGGTACTTGGGCCTTTTCA
AGCCATCTTTTGGATGATGAGTATTTGCAAAAACGAATTGATGGACGTTC
TGAGGATCAATAAGCACAAGACACACCACTGGAGTGCTGCCGATGCTGCA
GCTGCTCCTGCTACCGCTGTTACGACTACAGCTGCTGTTGCGTTCGAAAA
GGGCGGATGGGTAGGTGCGATGAAATGGGTGGTCGACGCGATTGCTCGTG
GCCCGTATACGGCTATGGCTTTGCTTCGTCCTGAGACAATTCCTAATGCC
CCTGAACGGATGGAGGCCGCCTTGTTAAGGTTTGCAGTGGAGAAGGTGGA
AGGGGAGGTTGAGAGGAAGTTAGGGCGGATGGACGAGTTGAGAGAGGCCT
TGGTTGAAACGTGGTATAGTGCAGTGAAAGGGGATGAGGGGGTATTTCGT
ACGTGGAAGGACAAGTGCTTCGAGAAACAAGATAAGGATTTTGCGTATAA
AATTTGTCCTTTCAAGGAGGTGAAGCAGAATTATTTGTTGGTGGGGAAAT
GGACAGGGTGGATTCAGAGGGATGACGGGATTGGAAGTAAGGATGGAGCA
GGGCCTGTGATGTACTTTACGGAAGGACAGCAGTGTTGGAATGGGCCGAA
GAGGACAGCTCTCGTGCAATTATGGTGTGGCCCGGAGGAGGCGGTTGTAG
AGGTGACGGAGCCGAGTGTGTGTTTGTATGACTTTGTGATGACGACACCG
TTGGTCTGCGATGAGGTGGTAGTGAAGGAGGCGGAAGAGAGGCTGAGGAG
GATGGGGGTAAAGTTGCCCGGAGATGATGCATGGGAAGGGGTGGAGTTCC
GGGAGGAGGGAGGGGGAGGTAGAATAGAAAGGGAGGAATTGTGATACGCT
TGAAAAATGAATTAAAAGCAGAAAACAGAACAGAAAAACATCTGCGGGGG
CATCGAGAGCTTGTCTGAGGCCTTGCGTTTCAAAACGAGTGCCTGAGAGC
ACGTGTGCTTCTCGGCTGCTCGGAGTCATGTCCATAAAGCTCCGGCTGCT
CTAAAAACCCGAGTCAAAAGGACAGCCGCTTTGCATCAGAGGTGCACTTT
GA
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Coding sequence (CDS) from alignment at scaffold_6:351883..353284+

>mRNA_3448 ID=mRNA_3448|Name=jgi.p|Nanoce1779_2|582153|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_6:351883..353284+ (Nannochloropsis oceanica)
ATGGGAGAGGTAGACAATTTCGAAGACCGCCTTCTCTCCGCCACCGCCAC
AGATGGCACGCTCAGCTTATCACTACGAACATATCTGAAAACAGTCGCCT
CTTCCTCCTCCTACTTCTCCTCTCCCGCGGCATCGTCAAAAGCCGCCACC
TCTGTCTGGGAGCCAACCGAGATTCTAGAATTGAATCTACAGGCGATGGG
TGCCCTGGTACTTGGGCCTTTTCAAGCCATCTTTTGGATGATGAGTATTT
GCAAAAACGAATTGATGGACGTTCTGAGGATCAATAAGCACAAGACACAC
CACTGGAGTGCTGCCGATGCTGCAGCTGCTCCTGCTACCGCTGTTACGAC
TACAGCTGCTGTTGCGTTCGAAAAGGGCGGATGGGTAGGTGCGATGAAAT
GGGTGGTCGACGCGATTGCTCGTGGCCCGTATACGGCTATGGCTTTGCTT
CGTCCTGAGACAATTCCTAATGCCCCTGAACGGATGGAGGCCGCCTTGTT
AAGGTTTGCAGTGGAGAAGGTGGAAGGGGAGGTTGAGAGGAAGTTAGGGC
GGATGGACGAGTTGAGAGAGGCCTTGGTTGAAACGTGGTATAGTGCAGTG
AAAGGGGATGAGGGGGTATTTCGTACGTGGAAGGACAAGTGCTTCGAGAA
ACAAGATAAGGATTTTGCGTATAAAATTTGTCCTTTCAAGGAGGTGAAGC
AGAATTATTTGTTGGTGGGGAAATGGACAGGGTGGATTCAGAGGGATGAC
GGGATTGGAAGTAAGGATGGAGCAGGGCCTGTGATGTACTTTACGGAAGG
ACAGCAGTGTTGGAATGGGCCGAAGAGGACAGCTCTCGTGCAATTATGGT
GTGGCCCGGAGGAGGCGGTTGTAGAGGTGACGGAGCCGAGTGTGTGTTTG
TATGACTTTGTGATGACGACACCGTTGGTCTGCGATGAGGTGGTAGTGAA
GGAGGCGGAAGAGAGGCTGAGGAGGATGGGGGTAAAGTTGCCCGGAGATG
ATGCATGGGAAGGGGTGGAGTTCCGGGAGGAGGGAGGGGGAGGTAGAATA
GAAAGGGAGGAATTGTGA
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Synonyms
Publications