jgi.p|Nanoce1779_2|669629, mRNA_3709 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669629
Unique Name	mRNA_3709
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1411
Alignment location	scaffold_6:1040299..1042528 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669715
Track	FilteredModels2
ProteinId	669629

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1040299..1042528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669629	gene_3709	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669629	mRNA_3709-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3709	CDS_3709	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1040299..1042528+
coding sequence from alignment at scaffold_6:1040299..1042528+

mRNA sequence

>mRNA_3709 ID=mRNA_3709|Name=jgi.p|Nanoce1779_2|669629|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp
ATGACGCCAGGCGCTGGCGACGGCCGCGACAGTCATTTTGTCCGCACTGC
GTTAACGCGCGTGTCGTGGGTCCTTCCTATCCCCCGCCAACTTGCCCTTG
AACTATCCCACCAGCGCGCGCCCCATCCCTTACTGCGTCATGGCCACCGA
TCCCCTGAATACCAGCGGGAGCAGCAGCACCAGCAGTCCTCGCACACCAG
CCTCTCCGGAAGCGGCCGAGGTGAAGCCACGAATCAAGCCCAAAGCACCA
CCACAAGCGCGACCATGGCTGCCTCTCCAGCTCCCCTAAGAGAAAGAGAA
GAAGGCCTCGTCTCCCTGCGTGTCAAGACGCTCGACTCCAAAGAACACGT
CTTCGAAGTGAATACCAACACGCTCACCGTCTCTGAGTTCAAGTCCCTGC
TCTTCCGTACCTTACCTGGGGCGGAGGGTAAGTTTCTTCGCCTCATCACA
CAGGGCAAGATGTTGATACCTGATACGGCGTTGCTTAATTCCTTCAAATT
ACTGGACCAGACGGTCGTCCACTGTGTCTTGTCCGACCAGCCCCCCCGCG
CCCACATTGGGCACATAGGGATTGACGTTGATGGAGGAGGAGGGAGGGAG
GAAGGACAAGTGGCCTATCCCGAGGTCAATGACGATCCGGTTTTGAGGAG
GGGGCTTGATAGACTTAGGACACACGGATTTTCGATACAAGAGGTGGCGG
CGTTAAGGTCTTATTTTAATGCGCAGGTGCTAGCGTATGCGGCCCGCCAG
CCGTCGAGGGAGGGGGAGTCAGTAGAGGAGAGGAGGAATAGGATGGAGGA
GGAGTGGATGGGCAGGCAGGGTGAGGGGAGTGAGTTTGCGTTGAACACGA
ATAGGGTGGTGGCGACACGGGCGGGCTTTGCGCTCGGCTTCATCTCCCTG
TTTTGGTTGTGGAACATTCCTCAGACGCATACCCAAAAGATGGGCATCAT
TTTAGGCGTCTCTTGCTCCCTCGGATGGAACATAATTCGAAGGGCGGAGA
TGGAGGGAGGGACGGAGGGAGGAGCGGGAAGCGGAGGAGGGAATGAGTTG
CCGTCGACCTTTGGAAATGGGGGTGGAGGGGTGGACACGGCGGGTGCTGC
TTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGACAGGAGTACCGCCGG
CGACAGTGGGCGTGGGACAATGAGGGAGGGAAGGAGTGAGCGAGGAAGGG
AGGAAAGGAGGGTTTGTGTATATAATTAGAAAGAGAGTAATGATAGGGGT
GGTCTTTTCTTTTGCTCTAACAAACGTTGAGAGGAGAGGGCGGGGAGAGG
CTGAGCAATAAGAAAGAGGGAGGGAAAGAGGGGAAGGAGTAGGTGAGTGT
AATAAATATTGCACATCAACAACATGGCCAACCATTAAATCAATCTAGAG
ATTGCCAGGGC

protein sequence of jgi.p|Nanoce1779_2|669629

>mRNA_3709-protein ID=mRNA_3709-protein|Name=jgi.p|Nanoce1779_2|669629|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MTPGAGDGRDSHFVRTALTRVSWVLPIPRQLALELSHQRAPHPLLRHGHR
SPEYQREQQHQQSSHTSLSGSGRGEATNQAQSTTTSATMAASPAPLRERE
EGLVSLRVKTLDSKEHVFEVNTNTLTVSEFKSLLFRTLPGAEGKFLRLIT
QGKMLIPDTALLNSFKLLDQTVVHCVLSDQPPRAHIGHIGIDVDGGGGRE
EGQVAYPEVNDDPVLRRGLDRLRTHGFSIQEVAALRSYFNAQVLAYAARQ
PSREGESVEERRNRMEEEWMGRQGEGSEFALNTNRVVATRAGFALGFISL
FWLWNIPQTHTQKMGIILGVSCSLGWNIIRRAEMEGGTEGGAGSGGGNEL
PSTFGNGGGGVDTAGAASAAAAAAAAAGTGVPPATVGVGQ*

mRNA from alignment at scaffold_6:1040299..1042528+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3709 ID=mRNA_3709|Name=jgi.p|Nanoce1779_2|669629|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp|location=Sequence derived from alignment at scaffold_6:1040299..1042528+ (Nannochloropsis oceanica)
ATGACGCCAGGCGCTGGCGACGGTAAATCCTCGTACTTCCAATATGTCTT
GTTTTGCTTTCTCGATCACATCAGCACCAGCACCACATTGACAGCGCAAC
TAAAGTTAGAAAAAGTCTTGGTGGAGAGAGGGGAAAGAGAGGCCGTTGAT
GCGTCAGCGGCCGGATCTTGGACAAAAAGCACTCTAAGACTCAAACTAAG
CAGCTAGACATGGTGTCTGCAAACGTCTCAGCTGTGACTTATGCACACCA
CCTCATTTTCGCTCTCTGAATCTCTTCTTACTCTCCCCCAATCCACAGGC
CGCGACAGTCATTTTGTCCGCACTGCGTTAACGCGCGTGTCGTGGGTCCT
TCCTATCCCCCGCCAACTTGCCCTTGAACTATCCCACCAGCGCGCGCCCC
ATCCCTTACTGCGTCATGGCCACCGATCCCCTGAATACCAGCGGGAGCAG
CAGCACCAGCAGTCCTCGCACACCAGGTAGCGAGGGTATAGATGGGTCGG
ACTCAAGCGAGACGACGGGACTCTTATTAGGGGGACCTGTGAGCAGAAGT
GGCAGCAGCAGGAGTAGCAGCCGAACGTCCCGGACAAGTAGTCGCAATAC
GCCGCCTCCTCCTCCCCCTCCTCCTCCCTCGACAGCATCATCATCGTCGT
TGCGTTCGACTCCCCCTCCTCCTCCACAGCCGCTGCCACCACAATCGGAA
GGAGCTGCTTCCTCCTCGTCTTCCTCCTCACTCTCCACCAACATAACTAA
CACCAGCCTCTCCGGAAGCGGCCGAGGTGAAGCCACGAATCAAGCCCAAA
GCACCACCACAAGCGCGACCATGGCTGCCTCTCCAGCTCCCCTAAGAGAA
AGAGAAGAAGGCCTCGTCTCCCTGCGTGTCAAGACGCTCGACTCCAAAGA
ACACGTCTTCGAAGTGAATACCAACACGCTCACCGTCTCTGAGTTCAAGT
CCCTGCTCTTCCGTACCTTACCTGGGGCGGAGGGTAAGTTTCTTCGCCTC
ATCACACAGGGCAAGATGTTGATACCTGATACGGCGTTGCTTAATTCCTT
CAAATTACTGGACCAGACGGTCGTCCACTGTGTCTTGTCCGACCAGCCCC
CCCGCGCCCACATTGGGCACATAGGGATTGACGTTGATGGAGGAGGAGGG
AGGGAGGAAGGACAAGTGGCCTATCCCGAGGTCAATGACGATCCGGTTTT
GAGGAGGGGGCTTGATAGACTTAGGACACACGGATTTTCGATACAAGAGG
TGGCGGCGTTAAGGTCTTATTTTAATGCGCAGGTGCTAGCGTATGCGGCC
CGCCAGCCGTCGAGGGAGGGGGAGTCAGTAGAGGAGAGGAGGAATAGGAT
GGAGGAGGAGTGGATGGGCAGGCAGGGTGAGGGGAGTGAGTTTGCGTTGA
ACACGAATAGGGTGGTGGCGACACGGGCGGTGTTTGCAGCAGCTAGGAGG
GGAGGAGGGGGGGGAGGGAGGGGGGGGAGAGCTGGGCGCGGGGACGTCGA
GGGAGTTTGTTTATGGATTTATAATGGTACGTCGGAGTTTAGGAAATAGG
AGGGGGGGATTCTACTTGTGAATGAGACGTCAAGGTTTGAGTGTGTATTT
ACTCTTGCTTTCATCTTTGTCACGACGCGCCTGACTGACTATAGAGCCCT
TGTCCTCACTCATCTTCTTCCTCTTTACCCTCTTGGCCACAGGGCTTTGC
GCTCGGCTTCATCTCCCTGTTTTGGTTGTGGAACATTCCTCAGACGCATA
CCCAAAAGATGGGCATCATTTTAGGCGTCTCTTGCTCCCTCGGATGGAAC
ATAATTCGAAGGGCGGAGATGGAGGGAGGGACGGAGGGAGGAGCGGGAAG
CGGAGGAGGGAATGAGTTGCCGTCGACCTTTGGAAATGGGGGTGGAGGGG
TGGACACGGCGGGTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGGACAGGAGTACCGCCGGCGACAGTGGGCGTGGGACAATGAGGGAGGGA
AGGAGTGAGCGAGGAAGGGAGGAAAGGAGGGTTTGTGTATATAATTAGAA
AGAGAGTAATGATAGGGGTGGTCTTTTCTTTTGCTCTAACAAACGTTGAG
AGGAGAGGGCGGGGAGAGGCTGAGCAATAAGAAAGAGGGAGGGAAAGAGG
GGAAGGAGTAGGTGAGTGTAATAAATATTGCACATCAACAACATGGCCAA
CCATTAAATCAATCTAGAGATTGCCAGGGC

Coding sequence (CDS) from alignment at scaffold_6:1040299..1042528+

>mRNA_3709 ID=mRNA_3709|Name=jgi.p|Nanoce1779_2|669629|organism=Nannochloropsis oceanica|type=CDS|length=4692bp|location=Sequence derived from alignment at scaffold_6:1040299..1042528+ (Nannochloropsis oceanica)
ATGACGCCAGGCGCTGGCGACGGCCGCGACAGTCATTTTGTCCGCACTGC
GTTAACGCGCGTGTCGTGGGTCCTTCCTATCCCCCGCCAACTTGCCCTTG
AACTATCCCACCAGCGCGCGCCCCATCCCTTACTGCGTCATGGCCACCGA
TCCCCTGAATACCAGCGGGAGCAGCAGCACCAGCAGTCCTCGCACACCAG
CCTCTCCGGAAGCGGCCGAGGTGAAGCCACGAATCAAGCCCAAAGCACCA
CCACAAGCGCGACCATGGCTGCCTCTCCAGCTCCCCTAAGAGAAAGAGAA
GAAGGCCTCGTCTCCCTGCGTGTCAAGACGCTCGACTCCAAAGAACACGT
CTTCGAAGTGAATACCAACACGCTCACCGTCTCTGAGTTCAAGTCCCTGC
TCTTCCGTACCTTACCTGGGGCGGAGGGTAAGTTTCTTCGCCTCATCACA
CAGGGCAAGATGTTGATACCTGATACGGCGTTGCTTAATTCCTTCAAATT
ACTGGACCAGACGGTCGTCCACTGTGTCTTGTCCGACCAGCCCCCCCGCG
CCCACATTGGGCACATAGGGATTGACGTTGATGGAGGAGGAGGGAGGGAG
GAAGGACAAGTGGCCTATCCCGAGGTCAATGACGATCCGGTTTTGAGGAG
GGGGCTTGATAGACTTAGGACACACGGATTTTCGATACAAGAGGTGGCGG
CGTTAAGGTCTTATTTTAATGCGCAGGTGCTAGCGTATGCGGCCCGCCAG
CCGTCGAGGGAGGGGGAGTCAGTAGAGGAGAGGAGGAATAGGATGGAGGA
GGAGTGGATGGGCAGGCAGGGTGAGGGGAGTGAGTTTGCGTTGAACACGA
ATAGGGTGGTGGCGACACGGGCGGGCTTTGCGCTCGGCTTCATCTCCCTG
TTTTGGTTGTGGAACATTCCTCAGACGCATACCCAAAAGATGGGCATCAT
TTTAGGCGTCTCTTGCTCCCTCGGATGGAACATAATTCGAAGGGCGGAGA
TGGAGGGAGGGACGGAGGGAGGAGCGGGAAGCGGAGGAGGGAATGAGTTG
CCGTCGACCTTTGGAAATGGGGGTGGAGGGGTGGACACGGCGGGTGCTGC
TTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGACAGGAGTACCGCCGG
CGACAGTGGGCGTGGGACAATGAATGACGCCAGGCGCTGGCGACGGCCGC
GACAGTCATTTTGTCCGCACTGCGTTAACGCGCGTGTCGTGGGTCCTTCC
TATCCCCCGCCAACTTGCCCTTGAACTATCCCACCAGCGCGCGCCCCATC
CCTTACTGCGTCATGGCCACCGATCCCCTGAATACCAGCGGGAGCAGCAG
CACCAGCAGTCCTCGCACACCAGCCTCTCCGGAAGCGGCCGAGGTGAAGC
CACGAATCAAGCCCAAAGCACCACCACAAGCGCGACCATGGCTGCCTCTC
CAGCTCCCCTAAGAGAAAGAGAAGAAGGCCTCGTCTCCCTGCGTGTCAAG
ACGCTCGACTCCAAAGAACACGTCTTCGAAGTGAATACCAACACGCTCAC
CGTCTCTGAGTTCAAGTCCCTGCTCTTCCGTACCTTACCTGGGGCGGAGG
GTAAGTTTCTTCGCCTCATCACACAGGGCAAGATGTTGATACCTGATACG
GCGTTGCTTAATTCCTTCAAATTACTGGACCAGACGGTCGTCCACTGTGT
CTTGTCCGACCAGCCCCCCCGCGCCCACATTGGGCACATAGGGATTGACG
TTGATGGAGGAGGAGGGAGGGAGGAAGGACAAGTGGCCTATCCCGAGGTC
AATGACGATCCGGTTTTGAGGAGGGGGCTTGATAGACTTAGGACACACGG
ATTTTCGATACAAGAGGTGGCGGCGTTAAGGTCTTATTTTAATGCGCAGG
TGCTAGCGTATGCGGCCCGCCAGCCGTCGAGGGAGGGGGAGTCAGTAGAG
GAGAGGAGGAATAGGATGGAGGAGGAGTGGATGGGCAGGCAGGGTGAGGG
GAGTGAGTTTGCGTTGAACACGAATAGGGTGGTGGCGACACGGGCGGGCT
TTGCGCTCGGCTTCATCTCCCTGTTTTGGTTGTGGAACATTCCTCAGACG
CATACCCAAAAGATGGGCATCATTTTAGGCGTCTCTTGCTCCCTCGGATG
GAACATAATTCGAAGGGCGGAGATGGAGGGAGGGACGGAGGGAGGAGCGG
GAAGCGGAGGAGGGAATGAGTTGCCGTCGACCTTTGGAAATGGGGGTGGA
GGGGTGGACACGGCGGGTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGGGACAGGAGTACCGCCGGCGACAGTGGGCGTGGGACAATGAATGA
CGCCAGGCGCTGGCGACGGCCGCGACAGTCATTTTGTCCGCACTGCGTTA
ACGCGCGTGTCGTGGGTCCTTCCTATCCCCCGCCAACTTGCCCTTGAACT
ATCCCACCAGCGCGCGCCCCATCCCTTACTGCGTCATGGCCACCGATCCC
CTGAATACCAGCGGGAGCAGCAGCACCAGCAGTCCTCGCACACCAGCCTC
TCCGGAAGCGGCCGAGGTGAAGCCACGAATCAAGCCCAAAGCACCACCAC
AAGCGCGACCATGGCTGCCTCTCCAGCTCCCCTAAGAGAAAGAGAAGAAG
GCCTCGTCTCCCTGCGTGTCAAGACGCTCGACTCCAAAGAACACGTCTTC
GAAGTGAATACCAACACGCTCACCGTCTCTGAGTTCAAGTCCCTGCTCTT
CCGTACCTTACCTGGGGCGGAGGGTAAGTTTCTTCGCCTCATCACACAGG
GCAAGATGTTGATACCTGATACGGCGTTGCTTAATTCCTTCAAATTACTG
GACCAGACGGTCGTCCACTGTGTCTTGTCCGACCAGCCCCCCCGCGCCCA
CATTGGGCACATAGGGATTGACGTTGATGGAGGAGGAGGGAGGGAGGAAG
GACAAGTGGCCTATCCCGAGGTCAATGACGATCCGGTTTTGAGGAGGGGG
CTTGATAGACTTAGGACACACGGATTTTCGATACAAGAGGTGGCGGCGTT
AAGGTCTTATTTTAATGCGCAGGTGCTAGCGTATGCGGCCCGCCAGCCGT
CGAGGGAGGGGGAGTCAGTAGAGGAGAGGAGGAATAGGATGGAGGAGGAG
TGGATGGGCAGGCAGGGTGAGGGGAGTGAGTTTGCGTTGAACACGAATAG
GGTGGTGGCGACACGGGCGGGCTTTGCGCTCGGCTTCATCTCCCTGTTTT
GGTTGTGGAACATTCCTCAGACGCATACCCAAAAGATGGGCATCATTTTA
GGCGTCTCTTGCTCCCTCGGATGGAACATAATTCGAAGGGCGGAGATGGA
GGGAGGGACGGAGGGAGGAGCGGGAAGCGGAGGAGGGAATGAGTTGCCGT
CGACCTTTGGAAATGGGGGTGGAGGGGTGGACACGGCGGGTGCTGCTTCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGGGACAGGAGTACCGCCGGCGAC
AGTGGGCGTGGGACAATGAATGACGCCAGGCGCTGGCGACGGCCGCGACA
GTCATTTTGTCCGCACTGCGTTAACGCGCGTGTCGTGGGTCCTTCCTATC
CCCCGCCAACTTGCCCTTGAACTATCCCACCAGCGCGCGCCCCATCCCTT
ACTGCGTCATGGCCACCGATCCCCTGAATACCAGCGGGAGCAGCAGCACC
AGCAGTCCTCGCACACCAGCCTCTCCGGAAGCGGCCGAGGTGAAGCCACG
AATCAAGCCCAAAGCACCACCACAAGCGCGACCATGGCTGCCTCTCCAGC
TCCCCTAAGAGAAAGAGAAGAAGGCCTCGTCTCCCTGCGTGTCAAGACGC
TCGACTCCAAAGAACACGTCTTCGAAGTGAATACCAACACGCTCACCGTC
TCTGAGTTCAAGTCCCTGCTCTTCCGTACCTTACCTGGGGCGGAGGGTAA
GTTTCTTCGCCTCATCACACAGGGCAAGATGTTGATACCTGATACGGCGT
TGCTTAATTCCTTCAAATTACTGGACCAGACGGTCGTCCACTGTGTCTTG
TCCGACCAGCCCCCCCGCGCCCACATTGGGCACATAGGGATTGACGTTGA
TGGAGGAGGAGGGAGGGAGGAAGGACAAGTGGCCTATCCCGAGGTCAATG
ACGATCCGGTTTTGAGGAGGGGGCTTGATAGACTTAGGACACACGGATTT
TCGATACAAGAGGTGGCGGCGTTAAGGTCTTATTTTAATGCGCAGGTGCT
AGCGTATGCGGCCCGCCAGCCGTCGAGGGAGGGGGAGTCAGTAGAGGAGA
GGAGGAATAGGATGGAGGAGGAGTGGATGGGCAGGCAGGGTGAGGGGAGT
GAGTTTGCGTTGAACACGAATAGGGTGGTGGCGACACGGGCGGGCTTTGC
GCTCGGCTTCATCTCCCTGTTTTGGTTGTGGAACATTCCTCAGACGCATA
CCCAAAAGATGGGCATCATTTTAGGCGTCTCTTGCTCCCTCGGATGGAAC
ATAATTCGAAGGGCGGAGATGGAGGGAGGGACGGAGGGAGGAGCGGGAAG
CGGAGGAGGGAATGAGTTGCCGTCGACCTTTGGAAATGGGGGTGGAGGGG
TGGACACGGCGGGTGCTGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GGGACAGGAGTACCGCCGGCGACAGTGGGCGTGGGACAATGA

Synonyms

Publications