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Properties
| Property Name | Value |
|---|
| TranscriptId | 669722 |
| Track | FilteredModels2 |
| ProteinId | 669636 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:1064668..1067204 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3719 ID=mRNA_3719|Name=jgi.p|Nanoce1779_2|669636|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
CGTGCTAGCTCGCAAGGAACAAAACACGCCGTAGCTGTACTGCTCACACA
CAACTAGCATAAATAGCTAGAACTTCATATCCACTCCCCACCTTTCCGTT
GCAGCGAATGTAGCAACCGCGTCAGGCTAAACCACTCTCTCATTTCTCGG
CCCTTCCGAAGCGCGAGTGATAAATTGTTCCACGTTGATGTCTCATCCCT
TCCTTTTTCCCTCCCTCTACGCCATACACCAACATAGCCACAGCATTTAT
CAGGAATGGCAACTCGCGAATTCGACGTGGTCATCTTTGGAGCCACAGGA
TTCACAGGCCAACTTGTGGCCGAATATTACCTACGGACATATGGCGCCCC
CTCCTCCTCTTTCAACTGGGCCATCGCCGGTCGCAATCAAAAAAAGCTCC
AAGAGATCAAAAAAGACTTGGGCATCAACAAAAACCTGCCGGAAGCCAAG
GACATAAAGACTCTTGTTGCCAACTCCAACGACTCAGCCTCCCTAGAGGC
GATCGCGAAGAATACGAAGGTGGTGGTCACGACGGTGGGGCCTTACATGA
AATATGGGAGTAAGCTCGTGGCAGCATGTGCGGCGAAGGGGACGCATTAC
GCAGATTTGACGGGAGAGGTGCCTTGGATCAAGGACATGATCGCCGCCAA
TGAAGAAAAGGCTAAAGCGTCCGGTGCGCGGATTCTGCACTGCTGTGGTT
TTGACTCGGTGCCGAGTGACCTGGGCACCCACGTCATGTACAACGCCCTG
GTGAAGAGGGGGCTGACCCCTACCGAGATCAAGTTTATCGTCGGGCCTTC
TAAGGGAGGGGTGAGTGGCGGCACCGTTCACTCTCTCGCAGGCGTGCTCC
AGAGCGGGCGATTGCGTGACATGGGCAATCCATACCTCCTCTTGTCAGGG
GGGAAGAAGGGAGGGAGGGGGGGAGGAGTGACGGTGAAGGAGCCGATGGG
CGTCGGCTGGGACCGAGACGTCCAGAGGTGGAATGCGCCGTTTGTGATGG
CGGGGATTAACACACGGGTAGTGGTGCGCTCGTCGTATTTGATGGACCGT
CTGCCCTTTGAGTACACCGAGACCATGTCCTTCCCCAAGGGGGTGGGAGG
GTTCTTGTCCGCGTGTGCTCTGACCCTAGGGCTTGCCCTGGTGGTGACTT
GCCTGCTCATTCCTCCCATCCGGTGGTTGGTGTTGAAGATGCTCCCGCCC
GGGTCGGGGCCGGGGGAGGAGATGCGGAAGACGGGCTTTGCATTGATTTA
TGTGGTGGGGAAGGGGGTGGATAAGGCGGGGAAGGAGGTGGTGCTGAAGG
GATCGGTTAGAATTGCAGGAGACCCGGGATATCAGGAAACCGCCAAGATG
CTCGCTGAGACCGGTATGGCGCTAGCCAAAGACGAAGTTGATGCTGCGCC
TGGATTTTTGACGCCTGCCTCTGCCTTGGGCGACAAATTGGTAACACGGC
TCAAGAAAAGGGATCTGGTGGTGGAGGTGGAGGGCGAGTGAAGCAAGGAG
GAAGGGAAAGAGGGCACGCAAGGCAGGGACGAGAGTCTAGAGGGTGAGAA
CAGGTGATGAGGGATGCTGGAGGGAGAGAAAGAATGAGGGGGTGTGGTGG
GTGTTGAATTCGCACGAGGGCCAGAAGAAGAGGGGGCGGTGATGGATGGT
CACGGAGGAGAGGATCGACAGCACAAGCCGGCTAGCAAAGACAGACGGGC
GGCAAGAACAGATATATCAGGTCTACATGGAGAGGGGGAAAGGAACAAGA
AGAAGAGCAAGAAGACCAAGAAGAGCGAGAAGAAGGAGAAGAAGGAGAAG
AAGAAAAAGAAGAAAAAGAAGAC back to topprotein sequence of jgi.p|Nanoce1779_2|669636 >mRNA_3719-protein ID=mRNA_3719-protein|Name=jgi.p|Nanoce1779_2|669636|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MATREFDVVIFGATGFTGQLVAEYYLRTYGAPSSSFNWAIAGRNQKKLQE
IKKDLGINKNLPEAKDIKTLVANSNDSASLEAIAKNTKVVVTTVGPYMKY
GSKLVAACAAKGTHYADLTGEVPWIKDMIAANEEKAKASGARILHCCGFD
SVPSDLGTHVMYNALVKRGLTPTEIKFIVGPSKGGVSGGTVHSLAGVLQS
GRLRDMGNPYLLLSGGKKGGRGGGVTVKEPMGVGWDRDVQRWNAPFVMAG
INTRVVVRSSYLMDRLPFEYTETMSFPKGVGGFLSACALTLGLALVVTCL
LIPPIRWLVLKMLPPGSGPGEEMRKTGFALIYVVGKGVDKAGKEVVLKGS
VRIAGDPGYQETAKMLAETGMALAKDEVDAAPGFLTPASALGDKLVTRLK
KRDLVVEVEGE* back to topmRNA from alignment at scaffold_6:1064668..1067204+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3719 ID=mRNA_3719|Name=jgi.p|Nanoce1779_2|669636|organism=Nannochloropsis oceanica|type=mRNA|length=2537bp|location=Sequence derived from alignment at scaffold_6:1064668..1067204+ (Nannochloropsis oceanica)
CGTGCTAGCTCGCAAGGAACAAAACACGCCGTAGCTGTACTGCTCACACA
CAACTAGCATAAATAGCTAGAACTTCATATCCACTCCCCACCTTTCCGTT
GCAGCGAATGTAGCAACCGCGTCAGGCTAAACCACTCTCTCATTTCTCGG
CCCTTCCGAAGCGCGAGTGATAAATTGTTCCACGTTGATGTCTCATCCCT
TCCTTTTTCCCTCCCTCTACGCCATACACCAACATAGCCACAGCATTTAT
CAGGAATGGCAACTCGCGAATTCGACGTGGTCATCTTTGGAGCCACAGGA
TTCACAGGTGTGTGTGGGGGTGCAGCGCAGCGAAGGGCAGAGAGGGAGCG
GTGATGGTAAAAGCCCTAGCGTGTTATCCATTGTTTCAGAGAGAGGAAGC
ATGAAAGGGCAGAAAATGAATCGGAGGAGGAAATGGCTGACAGGTCATGT
GATACTATAGAATGACTGAGCAAGGTGGTGAAATTGAGGAGCTGGAAACG
AAAACCAGCGTCACCCTCAATACGATCCTTCCATTCCTTCCTTCCCTCCC
CCCCGCCTCCCCTTCTGGCAGGCCAACTTGTGGCCGAATATTACCTACGG
ACATATGGCGCCCCCTCCTCCTCTTTCAACTGGGCCATCGCCGGTCGCAA
TCAAAAAAAGCTCCAAGAGATCAAAAAAGACTTGGGCATCAACAAAAACC
TGCCGGAAGCCAAGGACATAAAGACTCTTGTTGCCAACTCCAACGACTCA
GCCTCCCTAGAGGCGATCGCGAAGAATACGAAGGTGGTGGTCACGACGGT
GGGGCCTTACATGAAATATGGGAGTAAGCTCGTGGCAGCATGTGCGGCGA
AGGGGACGCATTACGCAGATTTGACGGGAGAGGTGAGGGAGGGAGGGAGG
AAGGGAGGGAGGGAGAGGCGGGTTTGTGAACCTCGCAGGACATGCCTTAG
AATCTCCGGCGGTATATGTTCGTGTAATAGGTTGTTATCAAATTGAATTT
GTTTTAGCACAATGTATTGAGGGTAGGTGTGAGGGGGAACAAAGGTGGGA
AGTCGAAAATCACCCATTCCTCCCCCCTCCTTTCCTCCCTCCCTCCTACC
CTCCCTCCCTCCCTCCCTCCCTGCCTCCCTGCCAGGTGCCTTGGATCAAG
GACATGATCGCCGCCAATGAAGAAAAGGCTAAAGCGTCCGGTGCGCGGAT
TCTGCACTGCTGTGGTTTTGACTCGGTGCCGAGTGACCTGGGCACCCACG
TCATGTACAACGCCCTGGTGAAGAGGGGGCTGACCCCTACCGAGATCAAG
TTTATCGTCGGGCCTTCTAAGGGAGGGGTGAGTGGCGGCACCGTTCACTC
TCTCGCAGGCGTGCTCCAGAGCGGGCGATTGCGTGACATGGGCAATCCAT
ACCTCCTCTTGTCAGGGGGGAAGAAGGGAGGGAGGGGGGGAGGAGTGACG
GTGAAGGAGCCGATGGGCGTCGGCTGGGACCGAGACGTCCAGAGGTGGAA
TGCGCCGTTTGTGATGGCGGGGATTAACACACGGGTAGTGGTGCGCTCGT
CGTATTTGATGGACCGTCTGCCCTTTGAGTACACCGAGACCATGTCCTTC
CCCAAGGGGGTGGGAGGGTTCTTGTCCGCGTGTGCTCTGACCCTAGGGCT
TGCCCTGGTGGTGACTTGCCTGCTCATTCCTCCCATCCGGTGGTTGGTGT
TGAAGATGCTCCCGCCCGGGTCGGGGCCGGGGGAGGAGATGCGGAAGACG
GGCTTTGCATTGATTTATGTGGTGGGGAAGGGGGTGGATAAGGCGGGGAA
GGAGGTGGTGCTGAAGGGATCGGTTAGAATTGCAGGAGACCCGGGATATC
AGGTATGCTCTATGACTGGCTTTGGCCCTCCCTCCCTTCCTCCCTCCCGC
CATCCCTATCTCACTACCTTCCTTTCTTCCTTTTCTCCCTTTTGCTTTCC
TTCTTTTCCCTCCGTCTTGCTTTAAGTGGACTTTCTGACCTCTTATCCGC
CTACCCCTCTCGCTCCCTTCCTCCCTCCCTCTCTCCCCCCATCCCCAAGG
AAACCGCCAAGATGCTCGCTGAGACCGGTATGGCGCTAGCCAAAGACGAA
GTTGATGCTGCGCCTGGATTTTTGACGCCTGCCTCTGCCTTGGGCGACAA
ATTGGTAACACGGCTCAAGAAAAGGGATCTGGTGGTGGAGGTGGAGGGCG
AGTGAAGCAAGGAGGAAGGGAAAGAGGGCACGCAAGGCAGGGACGAGAGT
CTAGAGGGTGAGAACAGGTGATGAGGGATGCTGGAGGGAGAGAAAGAATG
AGGGGGTGTGGTGGGTGTTGAATTCGCACGAGGGCCAGAAGAAGAGGGGG
CGGTGATGGATGGTCACGGAGGAGAGGATCGACAGCACAAGCCGGCTAGC
AAAGACAGACGGGCGGCAAGAACAGATATATCAGGTCTACATGGAGAGGG
GGAAAGGAACAAGAAGAAGAGCAAGAAGACCAAGAAGAGCGAGAAGAAGG
AGAAGAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAC back to topCoding sequence (CDS) from alignment at scaffold_6:1064668..1067204+ >mRNA_3719 ID=mRNA_3719|Name=jgi.p|Nanoce1779_2|669636|organism=Nannochloropsis oceanica|type=CDS|length=4944bp|location=Sequence derived from alignment at scaffold_6:1064668..1067204+ (Nannochloropsis oceanica)
ATGGCAACTCGCGAATTCGACGTGGTCATCTTTGGAGCCACAGGATTCAC
AGGCCAACTTGTGGCCGAATATTACCTACGGACATATGGCGCCCCCTCCT
CCTCTTTCAACTGGGCCATCGCCGGTCGCAATCAAAAAAAGCTCCAAGAG
ATCAAAAAAGACTTGGGCATCAACAAAAACCTGCCGGAAGCCAAGGACAT
AAAGACTCTTGTTGCCAACTCCAACGACTCAGCCTCCCTAGAGGCGATCG
CGAAGAATACGAAGGTGGTGGTCACGACGGTGGGGCCTTACATGAAATAT
GGGAGTAAGCTCGTGGCAGCATGTGCGGCGAAGGGGACGCATTACGCAGA
TTTGACGGGAGAGGTGCCTTGGATCAAGGACATGATCGCCGCCAATGAAG
AAAAGGCTAAAGCGTCCGGTGCGCGGATTCTGCACTGCTGTGGTTTTGAC
TCGGTGCCGAGTGACCTGGGCACCCACGTCATGTACAACGCCCTGGTGAA
GAGGGGGCTGACCCCTACCGAGATCAAGTTTATCGTCGGGCCTTCTAAGG
GAGGGGTGAGTGGCGGCACCGTTCACTCTCTCGCAGGCGTGCTCCAGAGC
GGGCGATTGCGTGACATGGGCAATCCATACCTCCTCTTGTCAGGGGGGAA
GAAGGGAGGGAGGGGGGGAGGAGTGACGGTGAAGGAGCCGATGGGCGTCG
GCTGGGACCGAGACGTCCAGAGGTGGAATGCGCCGTTTGTGATGGCGGGG
ATTAACACACGGGTAGTGGTGCGCTCGTCGTATTTGATGGACCGTCTGCC
CTTTGAGTACACCGAGACCATGTCCTTCCCCAAGGGGGTGGGAGGGTTCT
TGTCCGCGTGTGCTCTGACCCTAGGGCTTGCCCTGGTGGTGACTTGCCTG
CTCATTCCTCCCATCCGGTGGTTGGTGTTGAAGATGCTCCCGCCCGGGTC
GGGGCCGGGGGAGGAGATGCGGAAGACGGGCTTTGCATTGATTTATGTGG
TGGGGAAGGGGGTGGATAAGGCGGGGAAGGAGGTGGTGCTGAAGGGATCG
GTTAGAATTGCAGGAGACCCGGGATATCAGGAAACCGCCAAGATGCTCGC
TGAGACCGGTATGGCGCTAGCCAAAGACGAAGTTGATGCTGCGCCTGGAT
TTTTGACGCCTGCCTCTGCCTTGGGCGACAAATTGGTAACACGGCTCAAG
AAAAGGGATCTGGTGGTGGAGGTGGAGGGCGAGTGAATGGCAACTCGCGA
ATTCGACGTGGTCATCTTTGGAGCCACAGGATTCACAGGCCAACTTGTGG
CCGAATATTACCTACGGACATATGGCGCCCCCTCCTCCTCTTTCAACTGG
GCCATCGCCGGTCGCAATCAAAAAAAGCTCCAAGAGATCAAAAAAGACTT
GGGCATCAACAAAAACCTGCCGGAAGCCAAGGACATAAAGACTCTTGTTG
CCAACTCCAACGACTCAGCCTCCCTAGAGGCGATCGCGAAGAATACGAAG
GTGGTGGTCACGACGGTGGGGCCTTACATGAAATATGGGAGTAAGCTCGT
GGCAGCATGTGCGGCGAAGGGGACGCATTACGCAGATTTGACGGGAGAGG
TGCCTTGGATCAAGGACATGATCGCCGCCAATGAAGAAAAGGCTAAAGCG
TCCGGTGCGCGGATTCTGCACTGCTGTGGTTTTGACTCGGTGCCGAGTGA
CCTGGGCACCCACGTCATGTACAACGCCCTGGTGAAGAGGGGGCTGACCC
CTACCGAGATCAAGTTTATCGTCGGGCCTTCTAAGGGAGGGGTGAGTGGC
GGCACCGTTCACTCTCTCGCAGGCGTGCTCCAGAGCGGGCGATTGCGTGA
CATGGGCAATCCATACCTCCTCTTGTCAGGGGGGAAGAAGGGAGGGAGGG
GGGGAGGAGTGACGGTGAAGGAGCCGATGGGCGTCGGCTGGGACCGAGAC
GTCCAGAGGTGGAATGCGCCGTTTGTGATGGCGGGGATTAACACACGGGT
AGTGGTGCGCTCGTCGTATTTGATGGACCGTCTGCCCTTTGAGTACACCG
AGACCATGTCCTTCCCCAAGGGGGTGGGAGGGTTCTTGTCCGCGTGTGCT
CTGACCCTAGGGCTTGCCCTGGTGGTGACTTGCCTGCTCATTCCTCCCAT
CCGGTGGTTGGTGTTGAAGATGCTCCCGCCCGGGTCGGGGCCGGGGGAGG
AGATGCGGAAGACGGGCTTTGCATTGATTTATGTGGTGGGGAAGGGGGTG
GATAAGGCGGGGAAGGAGGTGGTGCTGAAGGGATCGGTTAGAATTGCAGG
AGACCCGGGATATCAGGAAACCGCCAAGATGCTCGCTGAGACCGGTATGG
CGCTAGCCAAAGACGAAGTTGATGCTGCGCCTGGATTTTTGACGCCTGCC
TCTGCCTTGGGCGACAAATTGGTAACACGGCTCAAGAAAAGGGATCTGGT
GGTGGAGGTGGAGGGCGAGTGAATGGCAACTCGCGAATTCGACGTGGTCA
TCTTTGGAGCCACAGGATTCACAGGCCAACTTGTGGCCGAATATTACCTA
CGGACATATGGCGCCCCCTCCTCCTCTTTCAACTGGGCCATCGCCGGTCG
CAATCAAAAAAAGCTCCAAGAGATCAAAAAAGACTTGGGCATCAACAAAA
ACCTGCCGGAAGCCAAGGACATAAAGACTCTTGTTGCCAACTCCAACGAC
TCAGCCTCCCTAGAGGCGATCGCGAAGAATACGAAGGTGGTGGTCACGAC
GGTGGGGCCTTACATGAAATATGGGAGTAAGCTCGTGGCAGCATGTGCGG
CGAAGGGGACGCATTACGCAGATTTGACGGGAGAGGTGCCTTGGATCAAG
GACATGATCGCCGCCAATGAAGAAAAGGCTAAAGCGTCCGGTGCGCGGAT
TCTGCACTGCTGTGGTTTTGACTCGGTGCCGAGTGACCTGGGCACCCACG
TCATGTACAACGCCCTGGTGAAGAGGGGGCTGACCCCTACCGAGATCAAG
TTTATCGTCGGGCCTTCTAAGGGAGGGGTGAGTGGCGGCACCGTTCACTC
TCTCGCAGGCGTGCTCCAGAGCGGGCGATTGCGTGACATGGGCAATCCAT
ACCTCCTCTTGTCAGGGGGGAAGAAGGGAGGGAGGGGGGGAGGAGTGACG
GTGAAGGAGCCGATGGGCGTCGGCTGGGACCGAGACGTCCAGAGGTGGAA
TGCGCCGTTTGTGATGGCGGGGATTAACACACGGGTAGTGGTGCGCTCGT
CGTATTTGATGGACCGTCTGCCCTTTGAGTACACCGAGACCATGTCCTTC
CCCAAGGGGGTGGGAGGGTTCTTGTCCGCGTGTGCTCTGACCCTAGGGCT
TGCCCTGGTGGTGACTTGCCTGCTCATTCCTCCCATCCGGTGGTTGGTGT
TGAAGATGCTCCCGCCCGGGTCGGGGCCGGGGGAGGAGATGCGGAAGACG
GGCTTTGCATTGATTTATGTGGTGGGGAAGGGGGTGGATAAGGCGGGGAA
GGAGGTGGTGCTGAAGGGATCGGTTAGAATTGCAGGAGACCCGGGATATC
AGGAAACCGCCAAGATGCTCGCTGAGACCGGTATGGCGCTAGCCAAAGAC
GAAGTTGATGCTGCGCCTGGATTTTTGACGCCTGCCTCTGCCTTGGGCGA
CAAATTGGTAACACGGCTCAAGAAAAGGGATCTGGTGGTGGAGGTGGAGG
GCGAGTGAATGGCAACTCGCGAATTCGACGTGGTCATCTTTGGAGCCACA
GGATTCACAGGCCAACTTGTGGCCGAATATTACCTACGGACATATGGCGC
CCCCTCCTCCTCTTTCAACTGGGCCATCGCCGGTCGCAATCAAAAAAAGC
TCCAAGAGATCAAAAAAGACTTGGGCATCAACAAAAACCTGCCGGAAGCC
AAGGACATAAAGACTCTTGTTGCCAACTCCAACGACTCAGCCTCCCTAGA
GGCGATCGCGAAGAATACGAAGGTGGTGGTCACGACGGTGGGGCCTTACA
TGAAATATGGGAGTAAGCTCGTGGCAGCATGTGCGGCGAAGGGGACGCAT
TACGCAGATTTGACGGGAGAGGTGCCTTGGATCAAGGACATGATCGCCGC
CAATGAAGAAAAGGCTAAAGCGTCCGGTGCGCGGATTCTGCACTGCTGTG
GTTTTGACTCGGTGCCGAGTGACCTGGGCACCCACGTCATGTACAACGCC
CTGGTGAAGAGGGGGCTGACCCCTACCGAGATCAAGTTTATCGTCGGGCC
TTCTAAGGGAGGGGTGAGTGGCGGCACCGTTCACTCTCTCGCAGGCGTGC
TCCAGAGCGGGCGATTGCGTGACATGGGCAATCCATACCTCCTCTTGTCA
GGGGGGAAGAAGGGAGGGAGGGGGGGAGGAGTGACGGTGAAGGAGCCGAT
GGGCGTCGGCTGGGACCGAGACGTCCAGAGGTGGAATGCGCCGTTTGTGA
TGGCGGGGATTAACACACGGGTAGTGGTGCGCTCGTCGTATTTGATGGAC
CGTCTGCCCTTTGAGTACACCGAGACCATGTCCTTCCCCAAGGGGGTGGG
AGGGTTCTTGTCCGCGTGTGCTCTGACCCTAGGGCTTGCCCTGGTGGTGA
CTTGCCTGCTCATTCCTCCCATCCGGTGGTTGGTGTTGAAGATGCTCCCG
CCCGGGTCGGGGCCGGGGGAGGAGATGCGGAAGACGGGCTTTGCATTGAT
TTATGTGGTGGGGAAGGGGGTGGATAAGGCGGGGAAGGAGGTGGTGCTGA
AGGGATCGGTTAGAATTGCAGGAGACCCGGGATATCAGGAAACCGCCAAG
ATGCTCGCTGAGACCGGTATGGCGCTAGCCAAAGACGAAGTTGATGCTGC
GCCTGGATTTTTGACGCCTGCCTCTGCCTTGGGCGACAAATTGGTAACAC
GGCTCAAGAAAAGGGATCTGGTGGTGGAGGTGGAGGGCGAGTGA back to top
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