jgi.p|Nanoce1779_2|374068, mRNA_10302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|374068
Unique NamemRNA_10302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2290
Alignment locationscaffold_60:23910..26281 +

Link to JBrowse

Properties
Property NameValue
TranscriptId374154
TrackFilteredModels2
ProteinId374068
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:23910..26281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|374068gene_10302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|374068mRNA_10302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10302CDS_10302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
AGGTGAGAGTGCCTATGAACAATGTATTCAGTGTGGCAGTATCCTCGAGA
ATGAGCCTCAGGACACACACAGGTCACATCGACGGGGCTAATAGCAGTCT
TACGGCTGGGCCATGTTCACTTTTTTCGTGGCGGCTGCCGTTGGAACACG
ACGACGTAATTTAGGTATTTAGCCCCCCAAGGCGTCGAGTTTTTATTTCC
CAGCCTCGCCACCTCAAGAAAAAAAAAAGAGATATCCAAGCATTTCATCA
ACAATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATC
GGCCCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGG
GTACCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAAT
CAGCACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACC
TAGACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTT
CTATTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACC
TTGACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTAC
TGCCCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGA
TTCACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACA
TTTGCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTA
CGTAGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGG
CTCTCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATT
AATGGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTT
CGTGATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTT
CAGGAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCT
GTCATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGA
GGAGCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGT
TGCTGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACA
AATCCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCTGC
CGCTGCAGCAGCAGCAGCAGCAGCAATGTCGTCGCATAGGATCGGAAGAA
GTGGCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTC
CGCGATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCT
TTTCAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCA
CCTTCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCC
CCTTCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTAC
GGGCCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAG
CCGTGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCC
AAGGTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAAC
AGGAGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCC
CCTTTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACC
GTGTGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGG
CGCGCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGA
GTGGGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCG
GTGGCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGA
GGCGTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTAGGGGTTT
TGTTGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGG
GCGATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGG
AGACGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTG
TGACGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACG
TAGGCGGAGGATCGTCGCAGTAATTAGGAAGTTATGAATGATAAATATTT
TTGTTTATTTGCGGAGGAGGTCTAGAGATGGATAACGTGT
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protein sequence of jgi.p|Nanoce1779_2|374068

>mRNA_10302-protein ID=mRNA_10302-protein|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MPPALDIKEAKQPLLSAQTDQRGAIDDQSGEAGTVDAQALQDKQQPPANQ
HSEEANLEEQQAESRPRHDRLAQIKQYCAHAFSILQELLAIPIMEALGTL
TLTLVVGLITRPAAATAPLTAALAIAAVLLAMIHAGARISGAHYNPAVTF
ALVLLGCTSPFQFLVYVGSQLAGAIGGAHLAKALASPDPLADPFLQGGIN
GKLALVEISYTFALVFVILHTVLARTQQPNSFSGAAICATIAAAAAVGAV
MNPAISTGLYVAGMSEERAGGKGGEEGLWIRWLLPMVGALVATCLFYLTN
PMDAMFPPGQDEAAAAAAAAAAAAMSSHRIGRSGMAGGVGGGGGRTPLLR
DGSSFSSVISSYSHVLFKVSRVLSVYLMEFQGTFLITLTIILSLTASSSP
SSLAPSPAATAGLLLTGLVFTGGYISGAHLNPAVTFGVFLFRPRRSDVPK
VLAYVAVQVLASVFATGATRLALGHAACQTALPFPQAPHKWQQALGVETV
CTALLVLVVLLLGAAGAQGHPYYGLAIGAALTSGLYAAGSISGGGLNPAV
ASGLYALNATKGQGEEAWIYWIGPLCGSVVGVLLAGCLAPRGWAMGRRRA
MERREEEEVKEEEEEGDEDEGKEEWMEKGEITVTEEEEGKKKEEEVAAT*
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mRNA from alignment at scaffold_60:23910..26281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=mRNA|length=2372bp|location=Sequence derived from alignment at scaffold_60:23910..26281+ (Nannochloropsis oceanica)
AGGTGAGAGTGCCTATGAACAATGTATTCAGTGTGGCAGTATCCTCGAGA ATGAGCCTCAGGACACACACAGGTCACATCGACGGGGCTAATAGCAGTCT TACGGCTGGGCCATGTTCACTTTTTTCGTGGCGGCTGCCGTTGGAACACG ACGACGTAATTTAGGTATTTAGCCCCCCAAGGTCAGTTCAGACTTGCCTT GAAGCTTGTCTAACATTATTTACTGTCTTTCTCACTCTCTCTCTGCACCA TTCCTCCCCACAGGCGTCGAGTTTTTATTTCCCAGCCTCGCCACCTCAAG AAAAAAAAAAGAGATATCCAAGCATTTCATCAACAATGCCGCCCGCTCTG GACATCAAAGAGGCCAAGCAACCCTTGTTATCGGCCCAGACCGATCAAAG AGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTACCGTGGACGCTCAAG CGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAGCACAGTGAGGAGGCT AATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAGACATGACCGTCTTGC TCAAATCAAGCAATATTGTGCCCATGCCTTTTCTATTCTTCAAGAGCTTC TTGCAATCCCCATCATGGAAGCCTTGGGCACCTTGACATTGACCCTTGTG GTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGCCCCACTAACCGCCGC GTTAGCCATTGCCGCCGTCTTACTGGCGATGATTCACGCTGGAGCCCGCA TTTCAGGCGCGCATTACAACCCAGCAGTAACATTTGCTTTGGTCCTGCTG GGCTGCACATCTCCTTTCCAATTCTTGGTCTACGTAGGGAGTCAACTCGC CGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTCTCGCTTCTCCAGATC CACTTGCCGACCCGTTTTTGCAGGGGGGCATTAATGGAAAATTAGCGCTG GTAGAGATATCTTATACCTTTGCTTTGGTCTTCGTGATCTTACACACGGT GCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAGGAGCTGCCATCTGTG CCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTCATGAATCCCGCGATA TCGACGGGTTTATATGTGGCGGGCATGAGTGAGGAGCGCGCGGGGGGGAA AGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGCTGCCCATGGTGGGGG CCTTGGTAGCCACATGCCTGTTTTATTTGACAAATCCCATGGATGCCATG TTCCCGCCAGGCCAGGACGAGGCAGCCGCTGCCGCTGCAGCAGCAGCAGC AGCAGCAATGTCGTCGCATAGGATCGGAAGAAGTGGCATGGCAGGAGGAG TCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGCGATGGTTCCTCGTTC TCGTCGGTCATCTCTTCATACTCCCATGTGCTTTTCAAAGTCTCGCGCGT CTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCTTCCTCATTACCCTCA CCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCTTCCTCCCTCGCTCCC TCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGGCCTCGTTTTCACCGG AGGGTACATCAGCGGTGCTCATCTTAATCCAGCCGTGACCTTCGGCGTTT TCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAGGTGTTAGCCTACGTG GCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGGAGCCACTCGCCTCGC CCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCTTTCCGCAGGCTCCGC ATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTGTGTACAGCCCTCCTT GTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGCGCAGGGGCATCCGTA CTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTGGGTTGTATGCTGCAG GGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTGGCCTCGGGATTGTAC GCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGCGTGGATTTATTGGAT TGGGCCTTTATGTGGATCTGTGGTAGGGGTTTTGTTGGCGGGGTGCTTGG CGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCGATGGAGAGGAGGGAG GAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGACGAGGACGAAGGCAA GGAGGAATGGATGGAGAAGGGGGAGATAACTGTGACGGAGGAAGAGGAGG GAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAGGCGGAGGATCGTCGC AGTAATTAGGAAGTTATGAATGATAAATATTTTTGTTTATTTGCGGAGGA GGTCTAGAGATGGATAACGTGT
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Coding sequence (CDS) from alignment at scaffold_60:23910..26281+

>mRNA_10302 ID=mRNA_10302|Name=jgi.p|Nanoce1779_2|374068|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_60:23910..26281+ (Nannochloropsis oceanica)
ATGCCGCCCGCTCTGGACATCAAAGAGGCCAAGCAACCCTTGTTATCGGC
CCAGACCGATCAAAGAGGGGCGATCGATGACCAAAGCGGTGAGGCGGGTA
CCGTGGACGCTCAAGCGCTGCAAGACAAGCAGCAACCTCCTGCCAATCAG
CACAGTGAGGAGGCTAATCTGGAGGAGCAGCAAGCCGAGTCCAGACCTAG
ACATGACCGTCTTGCTCAAATCAAGCAATATTGTGCCCATGCCTTTTCTA
TTCTTCAAGAGCTTCTTGCAATCCCCATCATGGAAGCCTTGGGCACCTTG
ACATTGACCCTTGTGGTCGGCCTTATCACCCGCCCCGCCGCCGCTACTGC
CCCACTAACCGCCGCGTTAGCCATTGCCGCCGTCTTACTGGCGATGATTC
ACGCTGGAGCCCGCATTTCAGGCGCGCATTACAACCCAGCAGTAACATTT
GCTTTGGTCCTGCTGGGCTGCACATCTCCTTTCCAATTCTTGGTCTACGT
AGGGAGTCAACTCGCCGGGGCCATCGGCGGCGCCCACCTAGCAAAGGCTC
TCGCTTCTCCAGATCCACTTGCCGACCCGTTTTTGCAGGGGGGCATTAAT
GGAAAATTAGCGCTGGTAGAGATATCTTATACCTTTGCTTTGGTCTTCGT
GATCTTACACACGGTGCTCGCCCGCACTCAGCAGCCCAATAGTTTTTCAG
GAGCTGCCATCTGTGCCACGATCGCGGCGGCGGCTGCTGTCGGTGCTGTC
ATGAATCCCGCGATATCGACGGGTTTATATGTGGCGGGCATGAGTGAGGA
GCGCGCGGGGGGGAAAGGGGGGGAGGAGGGGCTGTGGATTCGCTGGTTGC
TGCCCATGGTGGGGGCCTTGGTAGCCACATGCCTGTTTTATTTGACAAAT
CCCATGGATGCCATGTTCCCGCCAGGCCAGGACGAGGCAGCCGCTGCCGC
TGCAGCAGCAGCAGCAGCAGCAATGTCGTCGCATAGGATCGGAAGAAGTG
GCATGGCAGGAGGAGTCGGAGGGGGAGGTGGGCGGACACCCCTCCTCCGC
GATGGTTCCTCGTTCTCGTCGGTCATCTCTTCATACTCCCATGTGCTTTT
CAAAGTCTCGCGCGTCTTGTCCGTGTATCTGATGGAGTTTCAAGGCACCT
TCCTCATTACCCTCACCATTATCCTCTCGCTCACTGCTTCCTCCTCCCCT
TCCTCCCTCGCTCCCTCCCCCGCCGCCACTGCCGGCCTGCTCCTTACGGG
CCTCGTTTTCACCGGAGGGTACATCAGCGGTGCTCATCTTAATCCAGCCG
TGACCTTCGGCGTTTTCCTCTTCCGTCCTCGACGAAGTGACGTGCCCAAG
GTGTTAGCCTACGTGGCTGTCCAAGTGCTCGCCTCTGTTTTCGCAACAGG
AGCCACTCGCCTCGCCCTCGGCCATGCCGCTTGTCAAACCGCCCTCCCCT
TTCCGCAGGCTCCGCATAAGTGGCAACAAGCCCTGGGGGTCGAGACCGTG
TGTACAGCCCTCCTTGTCCTCGTTGTCCTCCTACTAGGTGCGGCGGGCGC
GCAGGGGCATCCGTACTATGGGCTGGCGATCGGTGCTGCTTTAACGAGTG
GGTTGTATGCTGCAGGGTCTATCTCGGGAGGAGGATTAAATCCTGCGGTG
GCCTCGGGATTGTACGCCCTGAATGCGACGAAGGGACAGGGCGAGGAGGC
GTGGATTTATTGGATTGGGCCTTTATGTGGATCTGTGGTAGGGGTTTTGT
TGGCGGGGTGCTTGGCGCCTCGGGGATGGGCGATGGGAAGAAGGAGGGCG
ATGGAGAGGAGGGAGGAGGAGGAGGTGAAAGAAGAGGAGGAAGAAGGAGA
CGAGGACGAAGGCAAGGAGGAATGGATGGAGAAGGGGGAGATAACTGTGA
CGGAGGAAGAGGAGGGAAAGAAGAAGGAGGAGGAAGTAGCTGCGACGTAG
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Synonyms
Publications