jgi.p|Nanoce1779_2|612589, mRNA_11141 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612589
Unique Name	mRNA_11141
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	772
Alignment location	scaffold_65:73313..74926 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612675
Track	FilteredModels2
ProteinId	612589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_65	supercontig	scaffold_65:73313..74926 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612589	gene_11141	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612589	mRNA_11141-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11141	CDS_11141	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_65:73313..74926+
coding sequence from alignment at scaffold_65:73313..74926+

mRNA sequence

>mRNA_11141 ID=mRNA_11141|Name=jgi.p|Nanoce1779_2|612589|organism=Nannochloropsis oceanica|type=mRNA|length=772bp
CAGCCCCACCCCATCTCTCCCTCGAAAGGCGCAATGAGTGCCGCAGTCCC
ATTGGTGGTGGCCGTGGACCTGGACGAGGTGCTTGGCTACTTTGTCGAGA
CGTTGGCGCGGTTTCACAACGAGGTGTACGGAAGTAGCTTGACGGCTGAG
CACTTTCATAGCTATGATTTTGTCGACGTGTGGGGCGGCACCCGCAAAGA
GGCCACGGAGAAGGTGATGGCCTTCTTTGAATCAAGTCATTTCCAGGAGG
AGCTGCCCCCCGTCCCCGGAGCATACCAAATCCTTTTGGATCTGAAGCGC
AAAGGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACC
CGAAACCGAAAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCC
TTCACTACGGCAACCACTACGCCACCTCAGGAACCCAGCATTCCAAGGCA
GAAATGTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCG
ATACGCTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCG
GCGACTACGCATGGAACCAGCCCGACTCCTCCCTCCACCCCTCCCTCTTG
CCCCCCCTCGTCACGCGGGTCACCCATTGGGATGCCGTTAAAGAGCGCAT
AGAAGCAATGCACGATGAGCACCGTTCACTACTGCTGCTGCAGCAGCAGC
AGCAGCAGCAATAGCAGTAGCTGCAATAGCAGCACCAGTAGTAGCAGTAG
CAGCAGCAGGAGGAGGCAGCAG

protein sequence of jgi.p|Nanoce1779_2|612589

>mRNA_11141-protein ID=mRNA_11141-protein|Name=jgi.p|Nanoce1779_2|612589|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MSAAVPLVVAVDLDEVLGYFVETLARFHNEVYGSSLTAEHFHSYDFVDVW
GGTRKEATEKVMAFFESSHFQEELPPVPGAYQILLDLKRKGIDFHLVTSR
QFRIQPETEKWIEKHYPDIFTALHYGNHYATSGTQHSKAEMCQAIGARLL
IDDSLRYALQVATEAGIEVLLFGDYAWNQPDSSLHPSLLPPLVTRVTHWD
AVKERIEAMHDEHRSLLLLQQQQQQQ*

mRNA from alignment at scaffold_65:73313..74926+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11141 ID=mRNA_11141|Name=jgi.p|Nanoce1779_2|612589|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at scaffold_65:73313..74926+ (Nannochloropsis oceanica)
CAGCCCCACCCCATCTCTCCCTCGAAAGGCGCAATGAGTGCCGCAGTCCC
ATTGGTGGTGGCCGTGGACCTGGACGAGGTGCTTGGCTACTTTGTCGAGA
CGTTGGCGCGGTTTCACAACGAGGTGTACGGAAGTAGCTTGACGGCTGGT
ATGTGAAGAGGAAGGGAGGGTGGAGGGAGAGAGGGAGGGAGGGAGGGGTG
GGAGGGATACGTCTGATCATGCCAACCCCCCATAAATATGTATGTTTTTG
TAGGGTTAAAGTTGTGCCAAGCTCTATCGTCGCGTGTGTTATAGCTATTC
TTGGCCGTGAGGGACATGCAGGTATTTATTCACGTATCCCTCCCTCGCTC
TCTCCCATCCTCTGTCCTAAGAGCACTTTCATAGCTATGATTTTGTCGAC
GTGTGGGGCGGCACCCGCAAAGAGGCCACGGAGAAGGTGATGGCCTTCTT
TGAATCAAGTCATTTCCAGGTCAGGGAGAGGAGAGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAGAAAGACGGAAAGCAACGAGCATCACCCTTGTCT
TTATCTGATGAGAAATGGGGAGAGAGGAGAAAGTGGATAAATGGTCGACT
AAAGCGGCAGCACCTTTCATTTCTATGGTCCATACATTACAGGAGGAGCT
GCCCCCCGTCCCCGGAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAG
GTAAGCATCCGCCCTCCCTCCCGTCCTCCCTCCCGCCCTCCCACCCTCCC
TCCCTTCTCTTTCTCTACTCATCTATTGCTTCCTCATCCGCCCCCTTACC
CCCCCTTTCTCCTACAGGCATTGATTTCCACCTCGTCACCTCCCGGCAGT
TCCGAATCCAACCCGAAACCGAAAAATGGATCGAGAAACACTACCCGGAT
ATATTCACGGCCCTTCACTACGGCAACCACTACGCCAGTACGCCCCTTCC
TCCCTCTCTCCCTCCCTTCATTTCTTCCTCCCTTGAGCCCACGGCACCCT
CACAGGCGACATGTTCTTTCACGATCATCACCTTTGTCTCTCCCGATTCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCCTCAGGAACCCAGCAT
TCCAAGGCAGAAATGTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGA
CTCGCTTCGATACGCTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCC
TCCTTTTCGGTACGTCCCTCCCTCCCTCCCTCCCTCCAGCCCTCCTTCTC
TTCAACATGTCTCCATCCGCCTCTTCGTTTCTCGAACTGGGCCCCTACTT
GTACATCCCTTTCGACAAGCACCTTCCCTCCGTCCCTCCCTACCCCCCTC
CCTCCCTCCATCCCTCCCTCCCTGACTCCTCTTTCTTCGCAGGCGACTAC
GCATGGAACCAGCCCGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCT
CGTCACGCGGGTCACCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAA
TGCACGATGAGCACCGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAG
CAATAGCAGTAGCTGCAATAGCAGCACCAGTAGTAGCAGTAGCAGCAGCA
GGAGGAGGCAGCAG

Coding sequence (CDS) from alignment at scaffold_65:73313..74926+

>mRNA_11141 ID=mRNA_11141|Name=jgi.p|Nanoce1779_2|612589|organism=Nannochloropsis oceanica|type=CDS|length=4086bp|location=Sequence derived from alignment at scaffold_65:73313..74926+ (Nannochloropsis oceanica)
ATGAGTGCCGCAGTCCCATTGGTGGTGGCCGTGGACCTGGACGAGGTGCT
TGGCTACTTTGTCGAGACGTTGGCGCGGTTTCACAACGAGGTGTACGGAA
GTAGCTTGACGGCTGAGCACTTTCATAGCTATGATTTTGTCGACGTGTGG
GGCGGCACCCGCAAAGAGGCCACGGAGAAGGTGATGGCCTTCTTTGAATC
AAGTCATTTCCAGGAGGAGCTGCCCCCCGTCCCCGGAGCATACCAAATCC
TTTTGGATCTGAAGCGCAAAGGCATTGATTTCCACCTCGTCACCTCCCGG
CAGTTCCGAATCCAACCCGAAACCGAAAAATGGATCGAGAAACACTACCC
GGATATATTCACGGCCCTTCACTACGGCAACCACTACGCCACCTCAGGAA
CCCAGCATTCCAAGGCAGAAATGTGCCAAGCCATCGGCGCCCGCCTACTC
ATCGACGACTCGCTTCGATACGCTCTCCAAGTCGCTACAGAAGCAGGAAT
TGAAGTCCTCCTTTTCGGCGACTACGCATGGAACCAGCCCGACTCCTCCC
TCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTCACCCATTGGGAT
GCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCACCGTTCACTACT
GCTGCTGCAGCAGCAGCAGCAGCAGCAATAGATGAGTGCCGCAGTCCCAT
TGGTGGTGGCCGTGGACCTGGACGAGGTGCTTGGCTACTTTGTCGAGACG
TTGGCGCGGTTTCACAACGAGGTGTACGGAAGTAGCTTGACGGCTGAGCA
CTTTCATAGCTATGATTTTGTCGACGTGTGGGGCGGCACCCGCAAAGAGG
CCACGGAGAAGGTGATGGCCTTCTTTGAATCAAGTCATTTCCAGGAGGAG
CTGCCCCCCGTCCCCGGAGCATACCAAATCCTTTTGGATCTGAAGCGCAA
AGGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACCCG
AAACCGAAAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCCTT
CACTACGGCAACCACTACGCCACCTCAGGAACCCAGCATTCCAAGGCAGA
AATGTGCCAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCGAT
ACGCTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCGGC
GACTACGCATGGAACCAGCCCGACTCCTCCCTCCACCCCTCCCTCTTGCC
CCCCCTCGTCACGCGGGTCACCCATTGGGATGCCGTTAAAGAGCGCATAG
AAGCAATGCACGATGAGCACCGTTCACTACTGCTGCTGCAGCAGCAGCAG
CAGCAGCAATAGATGAGTGCCGCAGTCCCATTGGTGGTGGCCGTGGACCT
GGACGAGGTGCTTGGCTACTTTGTCGAGACGTTGGCGCGGTTTCACAACG
AGGTGTACGGAAGTAGCTTGACGGCTGAGCACTTTCATAGCTATGATTTT
GTCGACGTGTGGGGCGGCACCCGCAAAGAGGCCACGGAGAAGGTGATGGC
CTTCTTTGAATCAAGTCATTTCCAGGAGGAGCTGCCCCCCGTCCCCGGAG
CATACCAAATCCTTTTGGATCTGAAGCGCAAAGGCATTGATTTCCACCTC
GTCACCTCCCGGCAGTTCCGAATCCAACCCGAAACCGAAAAATGGATCGA
GAAACACTACCCGGATATATTCACGGCCCTTCACTACGGCAACCACTACG
CCACCTCAGGAACCCAGCATTCCAAGGCAGAAATGTGCCAAGCCATCGGC
GCCCGCCTACTCATCGACGACTCGCTTCGATACGCTCTCCAAGTCGCTAC
AGAAGCAGGAATTGAAGTCCTCCTTTTCGGCGACTACGCATGGAACCAGC
CCGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTC
ACCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCA
CCGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAGATGAGTG
CCGCAGTCCCATTGGTGGTGGCCGTGGACCTGGACGAGGTGCTTGGCTAC
TTTGTCGAGACGTTGGCGCGGTTTCACAACGAGGTGTACGGAAGTAGCTT
GACGGCTGAGCACTTTCATAGCTATGATTTTGTCGACGTGTGGGGCGGCA
CCCGCAAAGAGGCCACGGAGAAGGTGATGGCCTTCTTTGAATCAAGTCAT
TTCCAGGAGGAGCTGCCCCCCGTCCCCGGAGCATACCAAATCCTTTTGGA
TCTGAAGCGCAAAGGCATTGATTTCCACCTCGTCACCTCCCGGCAGTTCC
GAATCCAACCCGAAACCGAAAAATGGATCGAGAAACACTACCCGGATATA
TTCACGGCCCTTCACTACGGCAACCACTACGCCACCTCAGGAACCCAGCA
TTCCAAGGCAGAAATGTGCCAAGCCATCGGCGCCCGCCTACTCATCGACG
ACTCGCTTCGATACGCTCTCCAAGTCGCTACAGAAGCAGGAATTGAAGTC
CTCCTTTTCGGCGACTACGCATGGAACCAGCCCGACTCCTCCCTCCACCC
CTCCCTCTTGCCCCCCCTCGTCACGCGGGTCACCCATTGGGATGCCGTTA
AAGAGCGCATAGAAGCAATGCACGATGAGCACCGTTCACTACTGCTGCTG
CAGCAGCAGCAGCAGCAGCAATAGATGAGTGCCGCAGTCCCATTGGTGGT
GGCCGTGGACCTGGACGAGGTGCTTGGCTACTTTGTCGAGACGTTGGCGC
GGTTTCACAACGAGGTGTACGGAAGTAGCTTGACGGCTGAGCACTTTCAT
AGCTATGATTTTGTCGACGTGTGGGGCGGCACCCGCAAAGAGGCCACGGA
GAAGGTGATGGCCTTCTTTGAATCAAGTCATTTCCAGGAGGAGCTGCCCC
CCGTCCCCGGAGCATACCAAATCCTTTTGGATCTGAAGCGCAAAGGCATT
GATTTCCACCTCGTCACCTCCCGGCAGTTCCGAATCCAACCCGAAACCGA
AAAATGGATCGAGAAACACTACCCGGATATATTCACGGCCCTTCACTACG
GCAACCACTACGCCACCTCAGGAACCCAGCATTCCAAGGCAGAAATGTGC
CAAGCCATCGGCGCCCGCCTACTCATCGACGACTCGCTTCGATACGCTCT
CCAAGTCGCTACAGAAGCAGGAATTGAAGTCCTCCTTTTCGGCGACTACG
CATGGAACCAGCCCGACTCCTCCCTCCACCCCTCCCTCTTGCCCCCCCTC
GTCACGCGGGTCACCCATTGGGATGCCGTTAAAGAGCGCATAGAAGCAAT
GCACGATGAGCACCGTTCACTACTGCTGCTGCAGCAGCAGCAGCAGCAGC
AATAGATGAGTGCCGCAGTCCCATTGGTGGTGGCCGTGGACCTGGACGAG
GTGCTTGGCTACTTTGTCGAGACGTTGGCGCGGTTTCACAACGAGGTGTA
CGGAAGTAGCTTGACGGCTGAGCACTTTCATAGCTATGATTTTGTCGACG
TGTGGGGCGGCACCCGCAAAGAGGCCACGGAGAAGGTGATGGCCTTCTTT
GAATCAAGTCATTTCCAGGAGGAGCTGCCCCCCGTCCCCGGAGCATACCA
AATCCTTTTGGATCTGAAGCGCAAAGGCATTGATTTCCACCTCGTCACCT
CCCGGCAGTTCCGAATCCAACCCGAAACCGAAAAATGGATCGAGAAACAC
TACCCGGATATATTCACGGCCCTTCACTACGGCAACCACTACGCCACCTC
AGGAACCCAGCATTCCAAGGCAGAAATGTGCCAAGCCATCGGCGCCCGCC
TACTCATCGACGACTCGCTTCGATACGCTCTCCAAGTCGCTACAGAAGCA
GGAATTGAAGTCCTCCTTTTCGGCGACTACGCATGGAACCAGCCCGACTC
CTCCCTCCACCCCTCCCTCTTGCCCCCCCTCGTCACGCGGGTCACCCATT
GGGATGCCGTTAAAGAGCGCATAGAAGCAATGCACGATGAGCACCGTTCA
CTACTGCTGCTGCAGCAGCAGCAGCAGCAGCAATAG

Synonyms

Publications