jgi.p|Nanoce1779_2|584432, mRNA_3064 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584432
Unique NamemRNA_3064
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1781
Alignment locationscaffold_7:583084..584986 -

Link to JBrowse

Properties
Property NameValue
TranscriptId584518
TrackFilteredModels2
ProteinId584432
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:583084..584986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584432gene_3064Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584432mRNA_3064-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3064CDS_3064Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3064 ID=mRNA_3064|Name=jgi.p|Nanoce1779_2|584432|organism=Nannochloropsis oceanica|type=mRNA|length=1781bp
CAGGCTCATCGTGACACCGTCGGCGGGATCGCAAGCCGCAGACGAGCCAC
AGAGACTAGGACTCAGTCAAGATGTCACCAGTGGACGACTACGACGACGA
CGATGACGACCTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAGC
AGCAGCGGCGCAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGAA
GAGGAAAGGGGAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGGA
AAGGAGAGGAGTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTAC
TCATAACCTCGCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGGC
TCAGGGAGGGATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGGA
CTTGGAGCGGCTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTAT
TCTGGGTGCCCGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCAA
GTTGGGGAGGGCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTCC
CACGAAGGATACTGACAAAAAGCAACACAAAGTCAAAAAAGAGGCCGATC
TCATTCCTTTCAACTATGGAGAAGAAGGGGGGGCGTTGCGCTGGAGCAGT
TATTACAAGGCCATGGCTCCCCGACCCCCGAAATCCAAGGACAAGAAAAA
CGTGGACTCCTCCCAGACCAACACTACCCTTGCTGATGCTGGCCCCGCTG
CCAATGATAACGACGACCATGACAACACGGTTACCGTCAGCGCCAACGGC
AAGAAGATAGAGAAGAAGAAAAAGGGACGAAGGCCAGCCAAACGTATGGC
CCCCAAAAAGCCGCCTATCTACACGCACGCCCAGTGGAGCAAGAGCATGC
AGTATGCGGAGATGGTACGAAGAAGCAAATAACGACGACGACACAAAATT
GATCATCCCCCTCTCTTTTCTAATTGACCCCTCCAGCTCCTTTCTAAGCG
TCGTTTTCAACCCCCTTCCGTGGCACTCACATCCACTCATCACACACCTG
TCTCTTACTCCTTTCTTCCCGCTTTTCTCACACACAGACCCTCCAAGACT
CCCTAACCGTGATATGGGCCAAGAAAGATCAGATTCAGCGGGAGCGTCAA
TTAGCAGCTTCATTGGCTGTGGTTACTCCTGACGAGGAGGAGGAAGAAGG
TGGTTGTGAAGTAGAGCGAGGACAGAGTGAGGTTATTAGCAGCCTCTATG
CCCAGAGCCCAACCTTAGCAGGGAAGAGGAAGGGAAGAGGGAATGTGGTC
TTGCAGCTTGGGGATAGGATTCAATTCAAGTCCCGCCTCGAGAAGGCCGG
GACGTTTTACGAGGCCACTGTCATAGGAATAGATCCCCCCAAGCAGAAGG
AGGAGGGAGGCATCCCGCTCACTTTGCGTCCGAGCGCCTTTCTCGACGTG
GACGTGCACGTGCAGAAGGTCGCCAAGTACAACGCGAGGAGGGGGACCTG
GAAGGACGTCCCGGAGGGGAGTCGGAAGTTCATGGCCTTGCGGGAGCATG
ACATGGGGAAAAAGGCGGTGCAGGCCGATGAGAAATTGTTGAGCCTGTTG
GCGCCCTCGATGGCGGCACAGGTGAAAAAGGTGATGGCGGAGGAGCAGGC
CAGATTGAACGAGGATATCCGCTTGGTTTTAGAGGGGGAAATTGACGTGG
AAGAGGATAAAGCTGGGGAGGAGGAAGAGGAGGAGGAGGAGGGAGTAGGG
GAGGAGGAGGAACGGAGAGAGTCGCCGAGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|584432

>mRNA_3064-protein ID=mRNA_3064-protein|Name=jgi.p|Nanoce1779_2|584432|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MSPVDDYDDDDDDLLMTDPIAEAKEEQQRRNCSAARHSGISSEEERGGIG
RGGGNEEEEERRGVVSTSPADAAAPVLITSQEIDSTSNIDDEGSGRDDYE
GKYTITPLVDLERLKWTKEGDAERGLFWVPVRVMTVNEIALEQVGEGKLP
EGKVWVRYFPTKDTDKKQHKVKKEADLIPFNYGEEGGALRWSSYYKAMAP
RPPKSKDKKNVDSSQTNTTLADAGPAANDNDDHDNTVTVSANGKKIEKKK
KGRRPAKRMAPKKPPIYTHAQWSKSMQYAEMVRRSK*
back to top

mRNA from alignment at scaffold_7:583084..584986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3064 ID=mRNA_3064|Name=jgi.p|Nanoce1779_2|584432|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at scaffold_7:583084..584986- (Nannochloropsis oceanica)
CAGGCTCATCGTGACACCGTCGGCGGGATCGCAAGCCGCAGACGAGCCAC
AGAGACTAGGACTCAGTCAAGATGTCACCAGTGGACGACTACGACGACGA
CGATGACGACCTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAGC
AGCAGCGGCGCAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGAA
GAGGAAAGGGGAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGGA
AAGGAGAGGAGTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTAC
TCATAACCTCGCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGGC
TCAGGGAGGGATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGGA
CTTGGAGCGGCTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTAT
TCTGGGTGCCCGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCAA
GTTGGGGAGGGCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTCC
CACGAAGGATACTGACAAAAAGTAAGTGAGGTAGGGATGGTGATGTGCAT
GTGCAGGCTTCGAACATGTGTTCTTTCTGTCTGACGACTAAGTATTTCTT
GCACCCCCCCCTAATTTCTTTCACCCCGTTACCATCCATTTAGGCAACAC
AAAGTCAAAAAAGAGGCCGATCTCATTCCTTTCAACTATGGAGAAGAAGG
GGGGGCGTTGCGCTGGAGCAGTTATTACAAGGCCATGGCTCCCCGACCCC
CGAAATCCAAGGACAAGAAAAACGTGGACTCCTCCCAGACCAACACTACC
CTTGCTGATGCTGGCCCCGCTGCCAATGATAACGACGACCATGACAACAC
GGTTACCGTCAGCGCCAACGGCAAGAAGATAGAGAAGAAGAAAAAGGGAC
GAAGGCCAGCCAAACGTATGGCCCCCAAAAAGCCGCCTATCTACACGCAC
GCCCAGTGGAGCAAGAGCATGCAGTATGCGGAGATGGTACGAAGAAGCAA
ATAACGACGACGACACAAAATTGATCATCCCCCTCTCTTTTCTAATTGAC
CCCTCCAGCTCCTTTCTAAGCGTCGTTTTCAACCCCCTTCCGTGGCACTC
ACATCCACTCATCACACACCTGTCTCTTACTCCTTTCTTCCCGCTTTTCT
CACACACAGACCCTCCAAGACTCCCTAACCGTGATATGGGCCAAGAAAGA
TCAGATTCAGCGGGAGCGTCAATTAGCAGCTTCATTGGCTGTGGTTACTC
CTGACGAGGAGGAGGAAGAAGGTGGTTGTGAAGTAGAGCGAGGACAGAGT
GAGGTTATTAGCAGCCTCTATGCCCAGAGCCCAACCTTAGCAGGGAAGAG
GAAGGGAAGAGGGAATGTGGTCTTGCAGCTTGGGGATAGGATTCAATTCA
AGTCCCGCCTCGAGAAGGCCGGGACGTTTTACGAGGCCACTGTCATAGGA
ATAGATCCCCCCAAGCAGAAGGAGGAGGGAGGCATCCCGCTCACTTTGCG
TCCGAGCGCCTTTCTCGACGTGGACGTGCACGTGCAGAAGGTCGCCAAGT
ACAACGCGAGGAGGGGGACCTGGAAGGACGTCCCGGAGGGGAGTCGGAAG
TTCATGGCCTTGCGGGAGCATGACATGGGGAAAAAGGCGGTGCAGGCCGA
TGAGAAATTGTTGAGCCTGTTGGCGCCCTCGATGGCGGCACAGGTGAAAA
AGGTGATGGCGGAGGAGCAGGCCAGATTGAACGAGGATATCCGCTTGGTT
TTAGAGGGGGAAATTGACGTGGAAGAGGATAAAGCTGGGGAGGAGGAAGA
GGAGGAGGAGGAGGGAGTAGGGGAGGAGGAGGAACGGAGAGAGTCGCCGA
GGA
back to top

Coding sequence (CDS) from alignment at scaffold_7:583084..584986-

>mRNA_3064 ID=mRNA_3064|Name=jgi.p|Nanoce1779_2|584432|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_7:583084..584986- (Nannochloropsis oceanica)
GCAACACAAAGTCAAAAAAGAGGCCGATCTCATTCCTTTCAACTATGGAG
AAGAAGGGGGGGCGTTGCGCTGGAGCAGTTATTACAAGGCCATGGCTCCC
CGACCCCCGAAATCCAAGGACAAGAAAAACGTGGACTCCTCCCAGACCAA
CACTACCCTTGCTGATGCTGGCCCCGCTGCCAATGATAACGACGACCATG
ACAACACGGTTACCGTCAGCGCCAACGGCAAGAAGATAGAGAAGAAGAAA
AAGGGACGAAGGCCAGCCAAACGTATGGCCCCCAAAAAGCCGCCTATCTA
CACGCACGCCCAGTGGAGCAAGAGCATGCAGTATGCGGAGATGGTACGAA
GAAGCAAATAAATGTCACCAGTGGACGACTACGACGACGACGATGACGAC
CTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAGCAGCAGCGGCG
CAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGAAGAGGAAAGGG
GAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGGAAAGGAGAGGA
GTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTACTCATAACCTC
GCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGGCTCAGGGAGGG
ATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGGACTTGGAGCGG
CTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTATTCTGGGTGCC
CGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCAAGTTGGGGAGG
GCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTCCCACGAAGGAT
ACTGACAAAAAGCAACACAAAGTCAAAAAAGAGGCCGATCTCATTCCTTT
CAACTATGGAGAAGAAGGGGGGGCGTTGCGCTGGAGCAGTTATTACAAGG
CCATGGCTCCCCGACCCCCGAAATCCAAGGACAAGAAAAACGTGGACTCC
TCCCAGACCAACACTACCCTTGCTGATGCTGGCCCCGCTGCCAATGATAA
CGACGACCATGACAACACGGTTACCGTCAGCGCCAACGGCAAGAAGATAG
AGAAGAAGAAAAAGGGACGAAGGCCAGCCAAACGTATGGCCCCCAAAAAG
CCGCCTATCTACACGCACGCCCAGTGGAGCAAGAGCATGCAGTATGCGGA
GATGGTACGAAGAAGCAAATAAATGTCACCAGTGGACGACTACGACGACG
ACGATGACGACCTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAG
CAGCAGCGGCGCAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGA
AGAGGAAAGGGGAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGG
AAAGGAGAGGAGTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTA
CTCATAACCTCGCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGG
CTCAGGGAGGGATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGG
ACTTGGAGCGGCTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTA
TTCTGGGTGCCCGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCA
AGTTGGGGAGGGCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTC
CCACGAAGGATACTGACAAAAA
back to top
Synonyms
Publications