jgi.p|Nanoce1779_2|613021, mRNA_11029 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613021
Unique NamemRNA_11029
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_70:18608..19855 +

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Properties
Property NameValue
TranscriptId613107
TrackFilteredModels2
ProteinId613021
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:18608..19855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613021gene_11029Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613021mRNA_11029-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11029CDS_11029Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11029 ID=mRNA_11029|Name=jgi.p|Nanoce1779_2|613021|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
CCAGATACCGTGAATGTACAGCTAGACACTTACTCTCACTAACCTCCCCA
CCTTGGTGGCCCTGCCACACCACAATAAACAATCCAAACCACAGAGATAC
AGGCACGCACCATTCCCTATGTAACCACCAGACAGAGCCTTCCGTCCACC
CTTGGCCAGATGCTGGGCCTGGGTTCGCTTGCTTTGACTTCCCTTTTCTC
TCGCAGCGTACACCTCCGTCGCCTATGCTTTTATTTGGTGCTGCCGCTCT
GCCGCCACAACTTGCCGCATTCATACCTTGTATGACTCGGAAGACAAAGC
AGATCCTCGTCATCATACACATGATCGCCCATCATACAAATGCAGACCTT
ATGGCATACTCCTGGACTCATGCCCTTCCTCCCCATCCCCTCAACACAGC
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGCCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGAAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGAAGTAGAAAGGGAGGATGAGAGGGAAGAAGGGA
ATGCAGGCATAGGATGGTGGGAAAAGAATAAGAGTCAAAGATACTGTA
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protein sequence of jgi.p|Nanoce1779_2|613021

>mRNA_11029-protein ID=mRNA_11029-protein|Name=jgi.p|Nanoce1779_2|613021|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MPSPLSTATATTLLLLAVAVTATGWFAFTPSGQVTIKYIWEGDKEGARKK
VAMKQLNYLKKELSYLGARIERAARQVEEAFREVGVSKKSRRDRDGGDGG
EDGEEEGWEESAASTSAYYHFSSSGKKFKNKWDEYDVEEELRRLEREDEK
EAEEGGAQTTIIGNGNENGEVGHRGGGSRRWRENGNGREGGREEGKPTWG
RMRTEVGQLQSDLEKAMGHLDSVRGDEEVKQRRKGLVLESHALFQALDAV
TQRLI*
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mRNA from alignment at scaffold_70:18608..19855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11029 ID=mRNA_11029|Name=jgi.p|Nanoce1779_2|613021|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_70:18608..19855+ (Nannochloropsis oceanica)
CCAGATACCGTGAATGTACAGCTAGACACTTACTCTCACTAACCTCCCCA
CCTTGGTGGCCCTGCCACACCACAATAAACAATCCAAACCACAGAGATAC
AGGCACGCACCATTCCCTATGTAACCACCAGACAGAGCCTTCCGTCCACC
CTTGGCCAGATGCTGGGCCTGGGTTCGCTTGCTTTGACTTCCCTTTTCTC
TCGCAGCGTACACCTCCGTCGCCTATGCTTTTATTTGGTGCTGCCGCTCT
GCCGCCACAACTTGCCGCATTCATACCTTGTATGACTCGGAAGACAAAGC
AGATCCTCGTCATCATACACATGATCGCCCATCATACAAATGCAGACCTT
ATGGCATACTCCTGGACTCATGCCCTTCCTCCCCATCCCCTCAACACAGC
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGCCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGAAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGAAGTAGAAAGGGAGGATGAGAGGGAAGAAGGGA
ATGCAGGCATAGGATGGTGGGAAAAGAATAAGAGTCAAAGATACTGTA
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Coding sequence (CDS) from alignment at scaffold_70:18608..19855+

>mRNA_11029 ID=mRNA_11029|Name=jgi.p|Nanoce1779_2|613021|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_70:18608..19855+ (Nannochloropsis oceanica)
ATGCCCTCACCCCTCTCAACCGCGACCGCCACCACCCTCCTCCTCCTCGC
TGTCGCCGTCACTGCCACCGGCTGGTTCGCCTTTACGCCTTCAGGTCAAG
TCACCATCAAGTACATATGGGAGGGAGACAAAGAGGGGGCCAGAAAAAAG
GTCGCAATGAAACAGCTTAATTACCTGAAAAAAGAGCTGAGTTACCTGGG
AGCAAGGATTGAGCGGGCAGCTAGACAGGTGGAAGAGGCGTTTAGGGAGG
TGGGGGTTAGCAAGAAAAGCAGGAGGGATAGAGATGGGGGAGACGGGGGA
GAGGATGGGGAGGAGGAGGGTTGGGAGGAGAGCGCAGCATCTACAAGTGC
CTACTATCATTTTAGTTCGTCTGGGAAGAAATTCAAGAATAAATGGGATG
AGTACGACGTGGAGGAGGAGTTGAGGAGATTGGAGAGAGAAGACGAGAAA
GAGGCCGAGGAAGGCGGGGCACAAACGACGATAATTGGCAATGGGAACGA
GAATGGAGAAGTCGGACACAGAGGAGGAGGGAGCAGAAGATGGAGAGAAA
ATGGAAATGGGAGGGAGGGAGGAAGAGAGGAAGGAAAGCCGACGTGGGGA
AGGATGCGGACGGAGGTGGGGCAGTTGCAGAGTGATTTGGAGAAGGCGAT
GGGCCATTTGGACAGTGTGAGGGGGGACGAGGAGGTGAAACAGAGGAGAA
AAGGTTTGGTGCTGGAGAGCCACGCTTTGTTCCAGGCCTTGGATGCGGTG
ACCCAGCGATTGATCTGA
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Synonyms
Publications