jgi.p|Nanoce1779_2|553989, mRNA_3842 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553989
Unique NamemRNA_3842
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2298
Alignment locationscaffold_8:176804..179211 -

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Properties
Property NameValue
TranscriptId554075
TrackFilteredModels2
ProteinId553989
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:176804..179211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553989gene_3842Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553989mRNA_3842-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3842CDS_3842Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Nanoce1779_2|553989|organism=Nannochloropsis oceanica|type=mRNA|length=2298bp
CGCCTACCTTGCAATCGATGGGAGAGTTTCTTAGCCTTCCTGCTACCAGG
AACGGTACTACAACGCCAAGTACCACTATCATGGGATTAATTTACAGGGG
ATGGTGTCCCCCGTAGGCATACTCGAGTCAGTCTTTGGCCCTCTTCCTGG
TATCCGTAACGACGCCGCCATGTGGTCTCTCGCCCGGGATTATAGTCCAA
TGGATCGCATCAGTACCGCGATCGGGCGGCACTGCTTTGCCCTGTATGAC
CCGGCTTACAGTGGTCACAATATGCAAAATTATATTGCCACGTCCTTCTC
CCGCTTTCAACAGGGGGACTGACAAGAGAGAAAACCGCCCACCATGGAAG
CTGGAGCGGCAGGTGTTAATACCGTGCCCATCAAGTAGCAGTACTCGTTC
ATCTTCTCTGCGAGGCGCGTTTCGTTCAGTTTTTTTTGTCGATGTGTGTT
CGATGCTTTTTGAGGGGTTGGGAAGCAGAGCAAAACCCTGTAAAAAGCGA
AAGGTACAAGAAACACACCCATCTGCACCTTTACGAAAAGGGAGGGAAGA
ATCGCTTTTTCAGGGGTTGCGAAAACAGCCCCAAATATTGTAATACATGC
CTCATAAACTATGAAACCATGATGCTGTACATGAAAAAGTCCCCTTTCCA
TGGATAAGTAAAGGCACATTCAAAACGAAAGGAGAAATGGATCCTCAAAG
TCTTTGCTTGTGCGGCGGAAGACTGCCACGTACCGCCTTCAACATGCACT
CGACTTCTTGTTGCTTCGGTTGACTGCGTCTACCTCTCTTTCTCTCTTTT
TTGTGTGACTTCATTTGGATACTTCCAACCGTATACGTGCCCACGACTAT
CCTCATCTTTATTTCTACTTGCAGGTCCTTTTGTGCGTGGTCTCCTTTCA
TGCTGGATTGGCAACTTTCTGTCTTTATCAAACATGGGCAGCAACGAGTC
TCGCGCCAGCATCACCTCTCCTGCTCCCGCGACATCTACGACTATCTCAT
CTTCCCCCGCCTTTGACAAGGGCAGAGATCTGTATGGTGGGGCGATAGAG
CTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGCCTAAGCAATACTCGGGA
GGACGACGGCGGAAGAAGAGATGATGAAAGTGACAGCAAAGCAATGAAAA
ATGTAGTAAGAACGAAAGAGAAAGAGACACACATCCGCTCGCAACACATC
TTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCCTGTCTTCAAATGATACT
CACCTACGCCGCCACTTCCGGAGCTGCTCGCTCCTCATCCTCCCCTTCCT
TCCCCCCTCCCACTCGCGACGCCCTTGTGGCTCAAGTAGGGACTGATTCC
ATATGGACGGTCGACTTGCTCTTCCTCCTCCAACAGTACGTCAACAGAAC
GCAACGTGAGGTCTTCTTCACCACCATCGCTCCCGGGGTCTGCTCCCATT
ATTCGACCCTTGCCTATTATAACAAAGGAGGGCAGTTCGCGAGTGATCGG
GACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAGAACAAAGGCCTTAGGAT
CTATGAGGGGAGAATCTCTTGGGAATCTTTGCGAGACTTGCTATGCACAG
GAAGAGTGTTGATTATCTTGCTGGTGAATCAAAAGGCACTCCCTTCTTCC
CTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCGCAGCAGCAGCAGCCGCC
GCCACCGGTAGCAGCTCCTACATCAATTACACCCACATATGACACCAGCA
GCGATACGGGAGTGACAACTATGATGGCCACTATACCAGCTGCTGCTGCT
GCACCTCTTCTGTCGTCCTCCCTCTCCACGACCTACTGCGGCCATTACAT
CCTCCTCACAGGCTTTCGCCCTGCATCGTCCTCCTCCCCATCCTCCTCAT
CTTCCTTCTCTGAAGGTTTCTTTATCTACAAAGACCCAGCGAAGCCTCCA
TCCTCACCAAGCTCACCCAAGGGGGAGAGAGGGAGGAAGGACAGGAGGGA
AGACGGGAGGGAGGACGATTTGGGTGGGGACTTTCTGATAAGTGTGGCGG
CGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGGATGAGGATGTGTTGGTG
GTGGAGGTGTGAGAGAGGGAGGGAGGGAGGGAGGAAGGGAGAGGTGTTCA
TTCTCAATGTCAACATAGCAACGTAGAACAGGGAGGAACGACAAGAAGAG
AATCGTAGCAGCAGCGGCAGCAGCGACAACAACAGCATCAACAGCAGCGG
TTTGTAAGCATGTCACAAGAAAAAGAAGGCCGGCGAAGTACATTATAA
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protein sequence of jgi.p|Nanoce1779_2|553989

>mRNA_3842-protein ID=mRNA_3842-protein|Name=jgi.p|Nanoce1779_2|553989|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MGSNESRASITSPAPATSTTISSSPAFDKGRDLYGGAIELQRDLLALLSR
LSNTREDDGGRRDDESDSKAMKNVVRTKEKETHIRSQHILQQASWDCGVA
CLQMILTYAATSGAARSSSSPSFPPPTRDALVAQVGTDSIWTVDLLFLLQ
QYVNRTQREVFFTTIAPGVCSHYSTLAYYNKGGQFASDRDRVLRLFCAAK
NKGLRIYEGRISWESLRDLLCTGRVLIILLVNQKALPSSLPPPPSTVLQS
QQQQPPPPVAAPTSITPTYDTSSDTGVTTMMATIPAAAAAPLLSSSLSTT
YCGHYILLTGFRPASSSSPSSSSSFSEGFFIYKDPAKPPSSPSSPKGERG
RKDRREDGREDDLGGDFLISVAALEKARKAEGTDEDVLVVEV*
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mRNA from alignment at scaffold_8:176804..179211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Nanoce1779_2|553989|organism=Nannochloropsis oceanica|type=mRNA|length=2408bp|location=Sequence derived from alignment at scaffold_8:176804..179211- (Nannochloropsis oceanica)
CGCCTACCTTGCAATCGATGGGTGAGCATTTAAGGCCTTCTCTATACACC
ACTTCAAGAACACCGTCTTTCTGGGGCCTCCCGTAAAAATAATTCATTGA
TCCACTCCTCTTCACTCACTTACCACGGCAGGAGAGTTTCTTAGCCTTCC
TGCTACCAGGAACGGTACTACAACGCCAAGTACCACTATCATGGGATTAA
TTTACAGGGGATGGTGTCCCCCGTAGGCATACTCGAGTCAGTCTTTGGCC
CTCTTCCTGGTATCCGTAACGACGCCGCCATGTGGTCTCTCGCCCGGGAT
TATAGTCCAATGGATCGCATCAGTACCGCGATCGGGCGGCACTGCTTTGC
CCTGTATGACCCGGCTTACAGTGGTCACAATATGCAAAATTATATTGCCA
CGTCCTTCTCCCGCTTTCAACAGGGGGACTGACAAGAGAGAAAACCGCCC
ACCATGGAAGCTGGAGCGGCAGGTGTTAATACCGTGCCCATCAAGTAGCA
GTACTCGTTCATCTTCTCTGCGAGGCGCGTTTCGTTCAGTTTTTTTTGTC
GATGTGTGTTCGATGCTTTTTGAGGGGTTGGGAAGCAGAGCAAAACCCTG
TAAAAAGCGAAAGGTACAAGAAACACACCCATCTGCACCTTTACGAAAAG
GGAGGGAAGAATCGCTTTTTCAGGGGTTGCGAAAACAGCCCCAAATATTG
TAATACATGCCTCATAAACTATGAAACCATGATGCTGTACATGAAAAAGT
CCCCTTTCCATGGATAAGTAAAGGCACATTCAAAACGAAAGGAGAAATGG
ATCCTCAAAGTCTTTGCTTGTGCGGCGGAAGACTGCCACGTACCGCCTTC
AACATGCACTCGACTTCTTGTTGCTTCGGTTGACTGCGTCTACCTCTCTT
TCTCTCTTTTTTGTGTGACTTCATTTGGATACTTCCAACCGTATACGTGC
CCACGACTATCCTCATCTTTATTTCTACTTGCAGGTCCTTTTGTGCGTGG
TCTCCTTTCATGCTGGATTGGCAACTTTCTGTCTTTATCAAACATGGGCA
GCAACGAGTCTCGCGCCAGCATCACCTCTCCTGCTCCCGCGACATCTACG
ACTATCTCATCTTCCCCCGCCTTTGACAAGGGCAGAGATCTGTATGGTGG
GGCGATAGAGCTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGCCTAAGCA
ATACTCGGGAGGACGACGGCGGAAGAAGAGATGATGAAAGTGACAGCAAA
GCAATGAAAAATGTAGTAAGAACGAAAGAGAAAGAGACACACATCCGCTC
GCAACACATCTTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCCTGTCTTC
AAATGATACTCACCTACGCCGCCACTTCCGGAGCTGCTCGCTCCTCATCC
TCCCCTTCCTTCCCCCCTCCCACTCGCGACGCCCTTGTGGCTCAAGTAGG
GACTGATTCCATATGGACGGTCGACTTGCTCTTCCTCCTCCAACAGTACG
TCAACAGAACGCAACGTGAGGTCTTCTTCACCACCATCGCTCCCGGGGTC
TGCTCCCATTATTCGACCCTTGCCTATTATAACAAAGGAGGGCAGTTCGC
GAGTGATCGGGACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAGAACAAAG
GCCTTAGGATCTATGAGGGGAGAATCTCTTGGGAATCTTTGCGAGACTTG
CTATGCACAGGAAGAGTGTTGATTATCTTGCTGGTGAATCAAAAGGCACT
CCCTTCTTCCCTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCGCAGCAGC
AGCAGCCGCCGCCACCGGTAGCAGCTCCTACATCAATTACACCCACATAT
GACACCAGCAGCGATACGGGAGTGACAACTATGATGGCCACTATACCAGC
TGCTGCTGCTGCACCTCTTCTGTCGTCCTCCCTCTCCACGACCTACTGCG
GCCATTACATCCTCCTCACAGGCTTTCGCCCTGCATCGTCCTCCTCCCCA
TCCTCCTCATCTTCCTTCTCTGAAGGTTTCTTTATCTACAAAGACCCAGC
GAAGCCTCCATCCTCACCAAGCTCACCCAAGGGGGAGAGAGGGAGGAAGG
ACAGGAGGGAAGACGGGAGGGAGGACGATTTGGGTGGGGACTTTCTGATA
AGTGTGGCGGCGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGGATGAGGA
TGTGTTGGTGGTGGAGGTGTGAGAGAGGGAGGGAGGGAGGGAGGAAGGGA
GAGGTGTTCATTCTCAATGTCAACATAGCAACGTAGAACAGGGAGGAACG
ACAAGAAGAGAATCGTAGCAGCAGCGGCAGCAGCGACAACAACAGCATCA
ACAGCAGCGGTTTGTAAGCATGTCACAAGAAAAAGAAGGCCGGCGAAGTA
CATTATAA
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Coding sequence (CDS) from alignment at scaffold_8:176804..179211-

>mRNA_3842 ID=mRNA_3842|Name=jgi.p|Nanoce1779_2|553989|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_8:176804..179211- (Nannochloropsis oceanica)
ATGGGCAGCAACGAGTCTCGCGCCAGCATCACCTCTCCTGCTCCCGCGAC
ATCTACGACTATCTCATCTTCCCCCGCCTTTGACAAGGGCAGAGATCTGT
ATGGTGGGGCGATAGAGCTGCAGCGGGACTTGCTTGCCCTCCTTTCGCGC
CTAAGCAATACTCGGGAGGACGACGGCGGAAGAAGAGATGATGAAAGTGA
CAGCAAAGCAATGAAAAATGTAGTAAGAACGAAAGAGAAAGAGACACACA
TCCGCTCGCAACACATCTTGCAGCAAGCCAGTTGGGACTGTGGTGTTGCC
TGTCTTCAAATGATACTCACCTACGCCGCCACTTCCGGAGCTGCTCGCTC
CTCATCCTCCCCTTCCTTCCCCCCTCCCACTCGCGACGCCCTTGTGGCTC
AAGTAGGGACTGATTCCATATGGACGGTCGACTTGCTCTTCCTCCTCCAA
CAGTACGTCAACAGAACGCAACGTGAGGTCTTCTTCACCACCATCGCTCC
CGGGGTCTGCTCCCATTATTCGACCCTTGCCTATTATAACAAAGGAGGGC
AGTTCGCGAGTGATCGGGACAGAGTCCTTCGCCTCTTTTGCGCGGCTAAG
AACAAAGGCCTTAGGATCTATGAGGGGAGAATCTCTTGGGAATCTTTGCG
AGACTTGCTATGCACAGGAAGAGTGTTGATTATCTTGCTGGTGAATCAAA
AGGCACTCCCTTCTTCCCTCCCTCCTCCCCCTTCTACGGTCCTGCAGTCG
CAGCAGCAGCAGCCGCCGCCACCGGTAGCAGCTCCTACATCAATTACACC
CACATATGACACCAGCAGCGATACGGGAGTGACAACTATGATGGCCACTA
TACCAGCTGCTGCTGCTGCACCTCTTCTGTCGTCCTCCCTCTCCACGACC
TACTGCGGCCATTACATCCTCCTCACAGGCTTTCGCCCTGCATCGTCCTC
CTCCCCATCCTCCTCATCTTCCTTCTCTGAAGGTTTCTTTATCTACAAAG
ACCCAGCGAAGCCTCCATCCTCACCAAGCTCACCCAAGGGGGAGAGAGGG
AGGAAGGACAGGAGGGAAGACGGGAGGGAGGACGATTTGGGTGGGGACTT
TCTGATAAGTGTGGCGGCGTTGGAGAAGGCGAGGAAGGCGGAAGGTACGG
ATGAGGATGTGTTGGTGGTGGAGGTGTGA
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Synonyms
Publications