jgi.p|Nanoce1779_2|586493, mRNA_4092 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586493
Unique NamemRNA_4092
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1727
Alignment locationscaffold_8:818085..819811 -

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Properties
Property NameValue
TranscriptId586579
TrackFilteredModels2
ProteinId586493
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:818085..819811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586493gene_4092Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586493mRNA_4092-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4092CDS_4092Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4092 ID=mRNA_4092|Name=jgi.p|Nanoce1779_2|586493|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
CAGTTCACAGGCATTTGCTGTAAGGCTTCTCGACTATCCGCCGCCAAACT
TCACTTCTCCCCCACCCTCGTATCAATTCCACCTGCATCAGCATCAAATT
TGACAAAGGAGTGCATTCAGTTAACTTAGACCACAAGCAATAGCCATGGC
AGCCACCAGCAATGGGCAGCTTTCCGCCGAGGATGAGGGCGATGTGTTTG
AGATCCGGGAATGGCTCGACGAGGACGGGAAAGAGGTATCGTCGGAAGTG
TACAGTGTGCGGGAGGCAGCCAGACAAGTGCAGGCGCTTAACTTATTTGG
GGCCTTAGAGAAGGCCGCTAAGGCCAAGAAAGAGGCCACTACCGCCGCAG
CTACCGCTGCCGAGGTTAATGATGCCGTGAACAGCCATTTTTCAGTGAAA
GTAGACGAGGTATCGACTAAGACCACGTTGAGCAGCAGCAACAGCGGCAG
CAGGCACAAAGCAAGTAACCGCCATCCCGCTCAGCTGAATGCTGGGGGCG
CTCTTCCGAACGTGACGAGCCAGCTTTTAGATGACCATGATTGGGAAGGG
ATCAAGAAACGCGCGAAGGAAATCGAAACCTTGCAGCGTAGGTCCGTGCA
TGGAGAATTAGAGGCAGAGGCGGACACGGCGAAAGGACGGGATAGGCTCG
AAGGGGTCGGTTGGGGAAAGGGCTTCTTTCTTAACAACGAAGAAAGCAAA
AGTACCGGCAAAAAGGATACCAACAACGCTAGCAGCATGAAGGGGAACCT
GACCGTTACCACCAGGCATATATCATCTCCGATCAAGAGCATTTTGCACA
CTAAGAGCTCGTATGGCGGCAGCAAGAAGCACGTGAGCTTCAACCTCGAT
TCTTCTCCAACTCCTCGACACAAACCTCTAGAATTCTTGTCACATTCTCG
CGTCCCTCGCCCTTACCAAGCGGAAGCAGAAGAGGAGAAGGACGAGGAAA
AACGCGCGTTGGCTGCCCTGCGACGGCAGCTGCAGCAGCGACAGCAGATG
CAGCAGTTTCAATCCGAGGACGAGGAGGAGAAAGCGCAAGCTGAAGCCTT
CACTGGACAAGTAAGCGAGATGAATGTGGAAGAGAAGAAAGAGAAAGGGG
CAGGAGCATCGGATGGAGCATGTAACATGCCAGCGCCCCAACCGACGCAG
AGATCGCAGCCAAGGATGGCGATTAACGCAGGAGCAGGAGCAGGAGCAAG
AGCGGGGGAAGTTGTCACATTCACGACAGGAGGAGGAGATAGGGCTGACA
TTGCTCCTCCGGGCATGTCTCGCTTCAAGGCCCGGGCGCTTGGACTGACG
TTCGAGGGCGACGAGGAGGGGAGCAACTGAAGTGTAGGGGATAGGAGATT
GAAGAAGGAGATTGAGGAGAGCAAGAGGAAAAGAAGCGAATGTATGCGAA
TGTATTTTCAAATGTTCGCGTACGAATATGCCTGAAGGTGGGGGGAGGAT
GTCAATCAAAATGTTACATGTGACATGCGGCCGCGGAAGTATATATGTGT
ATATGGGCAAGTTTGAGCAGATGGCACATAAGGAAGTGGATTGTGAGGAA
ATGTGCCTAATCAATATTTCTGTGTGCATGCGATAAGAGAAGAGGAGAAA
GAAAACGAGGGAAGCGACGGCGATCAAGATAGCGGTGCGTAAATCTAAAA
TTCAGAACAAGCAAATGAAAAATGTTTCACTCGACTCTCCAGCTGTGACG
GAAAAAATTAAGAAAACATTTTATATA
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protein sequence of jgi.p|Nanoce1779_2|586493

>mRNA_4092-protein ID=mRNA_4092-protein|Name=jgi.p|Nanoce1779_2|586493|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MAATSNGQLSAEDEGDVFEIREWLDEDGKEVSSEVYSVREAARQVQALNL
FGALEKAAKAKKEATTAAATAAEVNDAVNSHFSVKVDEVSTKTTLSSSNS
GSRHKASNRHPAQLNAGGALPNVTSQLLDDHDWEGIKKRAKEIETLQRRS
VHGELEAEADTAKGRDRLEGVGWGKGFFLNNEESKSTGKKDTNNASSMKG
NLTVTTRHISSPIKSILHTKSSYGGSKKHVSFNLDSSPTPRHKPLEFLSH
SRVPRPYQAEAEEEKDEEKRALAALRRQLQQRQQMQQFQSEDEEEKAQAE
AFTGQVSEMNVEEKKEKGAGASDGACNMPAPQPTQRSQPRMAINAGAGAG
ARAGEVVTFTTGGGDRADIAPPGMSRFKARALGLTFEGDEEGSN*
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mRNA from alignment at scaffold_8:818085..819811-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4092 ID=mRNA_4092|Name=jgi.p|Nanoce1779_2|586493|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp|location=Sequence derived from alignment at scaffold_8:818085..819811- (Nannochloropsis oceanica)
CAGTTCACAGGCATTTGCTGTAAGGCTTCTCGACTATCCGCCGCCAAACT
TCACTTCTCCCCCACCCTCGTATCAATTCCACCTGCATCAGCATCAAATT
TGACAAAGGAGTGCATTCAGTTAACTTAGACCACAAGCAATAGCCATGGC
AGCCACCAGCAATGGGCAGCTTTCCGCCGAGGATGAGGGCGATGTGTTTG
AGATCCGGGAATGGCTCGACGAGGACGGGAAAGAGGTATCGTCGGAAGTG
TACAGTGTGCGGGAGGCAGCCAGACAAGTGCAGGCGCTTAACTTATTTGG
GGCCTTAGAGAAGGCCGCTAAGGCCAAGAAAGAGGCCACTACCGCCGCAG
CTACCGCTGCCGAGGTTAATGATGCCGTGAACAGCCATTTTTCAGTGAAA
GTAGACGAGGTATCGACTAAGACCACGTTGAGCAGCAGCAACAGCGGCAG
CAGGCACAAAGCAAGTAACCGCCATCCCGCTCAGCTGAATGCTGGGGGCG
CTCTTCCGAACGTGACGAGCCAGCTTTTAGATGACCATGATTGGGAAGGG
ATCAAGAAACGCGCGAAGGAAATCGAAACCTTGCAGCGTAGGTCCGTGCA
TGGAGAATTAGAGGCAGAGGCGGACACGGCGAAAGGACGGGATAGGCTCG
AAGGGGTCGGTTGGGGAAAGGGCTTCTTTCTTAACAACGAAGAAAGCAAA
AGTACCGGCAAAAAGGATACCAACAACGCTAGCAGCATGAAGGGGAACCT
GACCGTTACCACCAGGCATATATCATCTCCGATCAAGAGCATTTTGCACA
CTAAGAGCTCGTATGGCGGCAGCAAGAAGCACGTGAGCTTCAACCTCGAT
TCTTCTCCAACTCCTCGACACAAACCTCTAGAATTCTTGTCACATTCTCG
CGTCCCTCGCCCTTACCAAGCGGAAGCAGAAGAGGAGAAGGACGAGGAAA
AACGCGCGTTGGCTGCCCTGCGACGGCAGCTGCAGCAGCGACAGCAGATG
CAGCAGTTTCAATCCGAGGACGAGGAGGAGAAAGCGCAAGCTGAAGCCTT
CACTGGACAAGTAAGCGAGATGAATGTGGAAGAGAAGAAAGAGAAAGGGG
CAGGAGCATCGGATGGAGCATGTAACATGCCAGCGCCCCAACCGACGCAG
AGATCGCAGCCAAGGATGGCGATTAACGCAGGAGCAGGAGCAGGAGCAAG
AGCGGGGGAAGTTGTCACATTCACGACAGGAGGAGGAGATAGGGCTGACA
TTGCTCCTCCGGGCATGTCTCGCTTCAAGGCCCGGGCGCTTGGACTGACG
TTCGAGGGCGACGAGGAGGGGAGCAACTGAAGTGTAGGGGATAGGAGATT
GAAGAAGGAGATTGAGGAGAGCAAGAGGAAAAGAAGCGAATGTATGCGAA
TGTATTTTCAAATGTTCGCGTACGAATATGCCTGAAGGTGGGGGGAGGAT
GTCAATCAAAATGTTACATGTGACATGCGGCCGCGGAAGTATATATGTGT
ATATGGGCAAGTTTGAGCAGATGGCACATAAGGAAGTGGATTGTGAGGAA
ATGTGCCTAATCAATATTTCTGTGTGCATGCGATAAGAGAAGAGGAGAAA
GAAAACGAGGGAAGCGACGGCGATCAAGATAGCGGTGCGTAAATCTAAAA
TTCAGAACAAGCAAATGAAAAATGTTTCACTCGACTCTCCAGCTGTGACG
GAAAAAATTAAGAAAACATTTTATATA
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Coding sequence (CDS) from alignment at scaffold_8:818085..819811-

>mRNA_4092 ID=mRNA_4092|Name=jgi.p|Nanoce1779_2|586493|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_8:818085..819811- (Nannochloropsis oceanica)
ATGGCAGCCACCAGCAATGGGCAGCTTTCCGCCGAGGATGAGGGCGATGT
GTTTGAGATCCGGGAATGGCTCGACGAGGACGGGAAAGAGGTATCGTCGG
AAGTGTACAGTGTGCGGGAGGCAGCCAGACAAGTGCAGGCGCTTAACTTA
TTTGGGGCCTTAGAGAAGGCCGCTAAGGCCAAGAAAGAGGCCACTACCGC
CGCAGCTACCGCTGCCGAGGTTAATGATGCCGTGAACAGCCATTTTTCAG
TGAAAGTAGACGAGGTATCGACTAAGACCACGTTGAGCAGCAGCAACAGC
GGCAGCAGGCACAAAGCAAGTAACCGCCATCCCGCTCAGCTGAATGCTGG
GGGCGCTCTTCCGAACGTGACGAGCCAGCTTTTAGATGACCATGATTGGG
AAGGGATCAAGAAACGCGCGAAGGAAATCGAAACCTTGCAGCGTAGGTCC
GTGCATGGAGAATTAGAGGCAGAGGCGGACACGGCGAAAGGACGGGATAG
GCTCGAAGGGGTCGGTTGGGGAAAGGGCTTCTTTCTTAACAACGAAGAAA
GCAAAAGTACCGGCAAAAAGGATACCAACAACGCTAGCAGCATGAAGGGG
AACCTGACCGTTACCACCAGGCATATATCATCTCCGATCAAGAGCATTTT
GCACACTAAGAGCTCGTATGGCGGCAGCAAGAAGCACGTGAGCTTCAACC
TCGATTCTTCTCCAACTCCTCGACACAAACCTCTAGAATTCTTGTCACAT
TCTCGCGTCCCTCGCCCTTACCAAGCGGAAGCAGAAGAGGAGAAGGACGA
GGAAAAACGCGCGTTGGCTGCCCTGCGACGGCAGCTGCAGCAGCGACAGC
AGATGCAGCAGTTTCAATCCGAGGACGAGGAGGAGAAAGCGCAAGCTGAA
GCCTTCACTGGACAAGTAAGCGAGATGAATGTGGAAGAGAAGAAAGAGAA
AGGGGCAGGAGCATCGGATGGAGCATGTAACATGCCAGCGCCCCAACCGA
CGCAGAGATCGCAGCCAAGGATGGCGATTAACGCAGGAGCAGGAGCAGGA
GCAAGAGCGGGGGAAGTTGTCACATTCACGACAGGAGGAGGAGATAGGGC
TGACATTGCTCCTCCGGGCATGTCTCGCTTCAAGGCCCGGGCGCTTGGAC
TGACGTTCGAGGGCGACGAGGAGGGGAGCAACTGA
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Synonyms
Publications