jgi.p|Nanoce1779_2|670397, mRNA_4604 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670397
Unique NamemRNA_4604
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_9:157922..158945 -

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Properties
Property NameValue
TranscriptId670483
TrackFilteredModels2
ProteinId670397
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:157922..158945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670397gene_4604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670397mRNA_4604-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4604CDS_4604Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Nanoce1779_2|670397|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
TTCTGCTTTCCTGTCGACCTCCTGCCTCTCCAGGAGCCCACCCCCCTTCT
GTCTCTCGCTCGGGCAACACACCCAAAGCAATAATCCCAAAATACATGCA
CAACACAGTGTAGCAAAGCAGCAATGGAGGACGATCTCTACCAAGATCTG
GACGTCCCCGCCTCGGCCGTTGCTACGCACGAGCTGGAAACCCGCTTGCA
AGCCGCGCAGGGCCGTATCACCACTCTCGAGCAAAAGGCAGCCTTGGTGG
GGCGGGAATGCGTGAGCTTACGGAAAGAGAATGAAGTGCTACGAACAAAT
ATATCTTCTCTTTACAACACGGCCAAGCGGGAGCTGGGGAGGAAGGACGC
GGAGCTACAGAGCTTGAGGGAGCAAGTGCGAGCATTGGGGAAACAATTGC
AGAACGGAGGTGGAGGGAGAGAAGGAGGGAGAGAAGACGGAGGAGAAGGG
CGGAGGGAAGGTGTAAGGGAAGAAAGGAGTGTGGTGAGGAAGCAGGGATT
GAGAGAGCAGAGGAGGGAAGGAGGCCAAAGGGGTTGA
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protein sequence of jgi.p|Nanoce1779_2|670397

>mRNA_4604-protein ID=mRNA_4604-protein|Name=jgi.p|Nanoce1779_2|670397|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MEDDLYQDLDVPASAVATHELETRLQAAQGRITTLEQKAALVGRECVSLR
KENEVLRTNISSLYNTAKRELGRKDAELQSLREQVRALGKQLQNGGGGRE
GGREDGGEGRREGVREERSVVRKQGLREQRREGGQRG*
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mRNA from alignment at scaffold_9:157922..158945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Nanoce1779_2|670397|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp|location=Sequence derived from alignment at scaffold_9:157922..158945- (Nannochloropsis oceanica)
TTCTGCTTTCCTGTCGACCTCCTGCCTCTCCAGGAGCCCACCCCCCTTCT
GTCTCTCGCTCGGGCAACACACCCAAAGCAATAATCCCAAAATACATGCA
CAACACAGTGTAGCAAAGCAGCAATGGAGGACGATCTCTACCAAGATCTG
GACGTCCCCGCCTCGGCCGTTGCTACGCACGAGCTGGAAACCCGCTTGCA
AGCCGCGCAGGGCCGTATCACCACTCTCGAGCAAAAGGCAGCCTTGGTGG
GGCGGGAATGCGTGAGCTTACGGAAAGAGAATGAAGTGCTACGAACAAAT
ATATCTTCTCTTTACAACACGGCCAAGCGGGAGCTGGGGAGGAAGGACGC
GGAGCTACAGAGCTTGAGGGAGCAAGTGCGAGCATTGGGGAAACAATTGC
AGAACGGAGGTGGAGGGAGAGAAGGAGGGAGAGAAGACGGAGGAGAAGGG
CGGAGGGAAGGTGTAAGGGAAGAAAGGAGTGTGGTGAGGAAGCAGGGATT
GAGAGAGCAGAGGAGGGAAGGAGGGTGGGTAGCGTGCAATGGAGGAGGGA
GAGAAGAAAGGAGAGCCGACAGATGGGAGTGGGAAAGAAAAGGAGAGAAA
GAAAGAGGACAGAAAGAGAGCAGGGAGGAGCGAAGGGAAGTGGGCAAGGA
GGAAAAGAGGGAAGTGTGGAAAGGGGAAGGGAGAAGTGAACGGGGGAGGG
AGGGAGGGAGGGATAGGCGATGACACCAGCCTCCAGGGGGAGGGGGGAAG
TACAAGAGACATATGTATATTAATAGTTGTACGCGTGGTCGCCATGTTTA
GCTCTAGTCTCTTTCATTTGCTACCTTCCTTTCTCTCTGTCTTTTTTTGC
GTCTCTGTCATTGTTGACCTATCATTTTGTTTGCACACATTTAACCCTTT
CACTCTTGTCTATCGATAAAAGGGGAGAAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGAGAAGGAAGGAGAGAGGACCTCTTCGCACAGTTCCTCCCGTC
AACTCCTCCAGCCAAAGGGGTTGA
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Coding sequence (CDS) from alignment at scaffold_9:157922..158945-

>mRNA_4604 ID=mRNA_4604|Name=jgi.p|Nanoce1779_2|670397|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_9:157922..158945- (Nannochloropsis oceanica)
CCAAAGGGGTTGAATGGAGGACGATCTCTACCAAGATCTGGACGTCCCCG
CCTCGGCCGTTGCTACGCACGAGCTGGAAACCCGCTTGCAAGCCGCGCAG
GGCCGTATCACCACTCTCGAGCAAAAGGCAGCCTTGGTGGGGCGGGAATG
CGTGAGCTTACGGAAAGAGAATGAAGTGCTACGAACAAATATATCTTCTC
TTTACAACACGGCCAAGCGGGAGCTGGGGAGGAAGGACGCGGAGCTACAG
AGCTTGAGGGAGCAAGTGCGAGCATTGGGGAAACAATTGCAGAACGGAGG
TGGAGGGAGAGAAGGAGGGAGAGAAGACGGAGGAGAAGGGCGGAGGGAAG
GTGTAAGGGAAGAAAGGAGTGTGGTGAGGAAGCAGGGATTGAGAGAGCAG
AGGAGGGAAGGAGGCCAAAGGGGTTGAATGGAGGACGATCTCTACCAAGA
TCTGGACGTCCCCGCCTCGGCCGTTGCTACGCACGAGCTGGAAACCCGCT
TGCAAGCCGCGCAGGGCCGTATCACCACTCTCGAGCAAAAGGCAGCCTTG
GTGGGGCGGGAATGCGTGAGCTTACGGAAAGAGAATGAAGTGCTACGAAC
AAATATATCTTCTCTTTACAACACGGCCAAGCGGGAGCTGGGGAGGAAGG
ACGCGGAGCTACAGAGCTTGAGGGAGCAAGTGCGAGCATTGGGGAAACAA
TTGCAGAACGGAGGTGGAGGGAGAGAAGGAGGGAGAGAAGACGGAGGAGA
AGGGCGGAGGGAAGGTGTAAGGGAAGAAAGGAGTGTGGTGAGGAAGCAGG
GATTGAGAGAGCAGAGGAGGGAAGGAGG
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Synonyms
Publications