jgi.p|Nanoce1779_2|571629, mRNA_1292 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571629
Unique NamemRNA_1292
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1434
Alignment locationscaffold_1:197230..199193 -

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Properties
Property NameValue
TranscriptId571715
TrackFilteredModels2
ProteinId571629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:197230..199193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571629gene_1292Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571629mRNA_1292-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1292CDS_1292Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1292 ID=mRNA_1292|Name=jgi.p|Nanoce1779_2|571629|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ACAGTACCATAGACACATAGGCACACGCAAGTATTTCACAGGGACCTTCC
ATCGTGCCTTTGTTGACAGCAACATAGTCGCAACACGATATGTCCGCGAC
ACCTCCGAAGGCACCGTACCACGACCCCATATCTCACGCCCCGGATACAT
ACAGGAGCAGAAGTACCGGGCCAAACCGTTGACCAAGGCGGAAGTGACGA
GCAATGAGTCTTTGTTCTATTGGCGGAGGCAGTACGACGACATGATCCAC
TACATCCGGGAGTCGGGCATCACCCCCGAGGAGGCGGATGATGACGAGGC
AATCCGCCTACTGGCCGAATGGAACGGGAACATCAAGGACGCCGTGCTCA
ATGGAGAGAAAGGCCGGGAATGGAAGAAAGCTAACCTGCCCATTTCCCGC
TCTGAAGTCATGCCTACGCTCAAGACAGGCAAATTTGTCTTTGCGGGTTA
CGATAAAGTGGGCCGGGCTGTCTGCTACTACCGCGTCAAGCTGCACGACC
CGAAAAAGTTCACGGCCCTGGAATCCGTCCGAGCGGTGGTATATAATTAT
GAGCAGATGCTGGCGGAGGGCAAGCTGCGGGGGGCGGGGGAGATATGTGT
CGTGGTTGATCGGACGGACGCCAAAAGCAGTAACATGGACATCGAGTTCA
TGAAGCTCCTCTACACGATGCTTAAGGAGTCCTACCCTGCCAGAGGTGAG
CTGTTCTTAGTCCTAGGCGTCAATTTCATCTTTCGTAAGATCTGGGAGAA
TTTGGTTTCAGTCTTCCTTGATGCCAAGAGTCGGAGTGCGACACATTTGT
TGAAGGATAAGACGGAATTGCTTGATTTCATTGATGAGGAGCAGCTAGTG
GATTGGTTGGGAGGGAAGCTGCCCTACACGTTCGAACCACCTGTGGAGGA
GTGAGACATAGAAGTGATAAAGACTGGAAGTGGGAGCAGTACCACTAGTG
TAGGTTTATCGGAATACCGGTGGGGGAGCAGAGGGGATGAGGGTGGGGAG
GTTGGTGCACCACTTCCGCATAAGGAGATAGAGCAAATTGCGGTTAGGGC
GAAGGAATTTAAGAAATTAAACCGATTCGCACATCTCTTGTTATGACTTT
TTCTTTCTTGTGTTTTGAGGTGAGACGAGGAAGGGGGGAAATGGAACTCG
CCGATCGAAAACGAGTGGGGGGGCAACGTCTTTGCCATCCAAGTGGGGAC
AGCTGAGGACGAATGCAGCCATCCGCACATGTTTGTATGCCTTTGTCTGG
CATGAATGCGACCATAAACTTAAGGAGGTATACACTCGGATTGGGGACCC
CACACTTGGTTTGTCTACTATTCTGCCCAATAACAACTTTCCGTACACGC
ACACGTCACAGGGCACCCAAACCATGATTAAGTCGAGCTCCACTACCACC
AGCACCTGGTCGCAAGCCCTGCCCCCGCAATACT
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protein sequence of jgi.p|Nanoce1779_2|571629

>mRNA_1292-protein ID=mRNA_1292-protein|Name=jgi.p|Nanoce1779_2|571629|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MIHYIRESGITPEEADDDEAIRLLAEWNGNIKDAVLNGEKGREWKKANLP
ISRSEVMPTLKTGKFVFAGYDKVGRAVCYYRVKLHDPKKFTALESVRAVV
YNYEQMLAEGKLRGAGEICVVVDRTDAKSSNMDIEFMKLLYTMLKESYPA
RGELFLVLGVNFIFRKIWENLVSVFLDAKSRSATHLLKDKTELLDFIDEE
QLVDWLGGKLPYTFEPPVEE*
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mRNA from alignment at scaffold_1:197230..199193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1292 ID=mRNA_1292|Name=jgi.p|Nanoce1779_2|571629|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_1:197230..199193- (Nannochloropsis oceanica)
ACAGTACCATAGACACATAGGCACACGCAAGTATTTCACAGGGACCTTCC
ATCGTGCCTTTGTTGACAGCAACATAGTCGCAACACGATATGTCCGCGAC
ACCTCCGAAGGCACCGTACCACGACCCCATATCTCACGCCCCGGATACAT
ACAGGAGCAGGTAAAGCACAATGAAGTGGTCCAGGAAGGAGGTCAGCTCG
CCAGAACCGACGCCCAGTAGCCTCACACGCAATATCTCGTCGCCCTCCAA
GAAGTACCGGGCCAAACCGTTGACCAAGGCGGAAGTGACGAGCAATGAGT
CTTTGTTCTATTGGCGGAGGCAGTACGACGACATGATCCACTACATCCGG
GAGTCGGGCATCACCCCCGAGGAGGCGGATGATGACGAGGTAAGTAGCTC
CGAAATGGGGCGAGGGAGGAATGGTAGAGAAGGCGATGGGCTTGTGCCAA
AAAGAACGGAGAGAGGGGAGGGACGCTTGCCTGTCTGCCTGCAGGCTTCT
AAACAATAGCAGCAACTTAATGAGGTTAATGTGCCGACACAGCACGTCGC
GGAAAGGATATCGGGAAAGAAATTGAAACAAAAAAGGGTTGTAGGCCGCC
TGTCTCAGACTTGCTCCGTCCATGCTTGCCCGGTCCTTCAATATACTCAC
GCACACCTCTTATCCACCGAACAGGCAATCCGCCTACTGGCCGAATGGAA
CGGGAACATCAAGGACGCCGTGCTCAATGGAGAGAAAGGCCGGGAATGGA
AGAAAGCTAACCTGCCCATTTCCCGCTCTGAAGTCATGCCTACGCTCAAG
ACAGGCAAATTTGTCTTTGCGGGTTACGATAAAGTGGGCCGGGCTGTCTG
CTACTACCGCGTCAAGCTGCACGACCCGAAAAAGTTCACGGCCCTGGAAT
CCGTCCGAGCGGTGGTATATAATTATGAGCAGATGCTGGCGGAGGGCAAG
CTGCGGGGGGCGGGGGAGATATGTGTCGTGGTTGATCGGACGGACGCCAA
AAGCAGTAACATGGACATCGAGGTACGTGAGGCTTGCTGGGAGTGCGGCG
GGGTGACGAGGGAGCGCAGAAGGACGAAAAAAGGTAAAAGAGGAAATATT
TTATTCGCCTAGATTCGCACTCGCTCAACTACCCAGTCTTACCTTTCGCC
CTTCCGCACCTTCTCCTACAAAACAGTTCATGAAGCTCCTCTACACGATG
CTTAAGGAGTCCTACCCTGCCAGAGGTGAGCTGTTCTTAGTCCTAGGCGT
CAATTTCATCTTTCGTAAGATCTGGGAGAATTTGGTTTCAGTCTTCCTTG
ATGCCAAGAGTCGGAGTGCGACACATTTGTTGAAGGATAAGACGGAATTG
CTTGATTTCATTGATGAGGAGCAGCTAGTGGATTGGTTGGGAGGGAAGCT
GCCCTACACGTTCGAACCACCTGTGGAGGAGTGAGACATAGAAGTGATAA
AGACTGGAAGTGGGAGCAGTACCACTAGTGTAGGTTTATCGGAATACCGG
TGGGGGAGCAGAGGGGATGAGGGTGGGGAGGTTGGTGCACCACTTCCGCA
TAAGGAGATAGAGCAAATTGCGGTTAGGGCGAAGGAATTTAAGAAATTAA
ACCGATTCGCACATCTCTTGTTATGACTTTTTCTTTCTTGTGTTTTGAGG
TGAGACGAGGAAGGGGGGAAATGGAACTCGCCGATCGAAAACGAGTGGGG
GGGCAACGTCTTTGCCATCCAAGTGGGGACAGCTGAGGACGAATGCAGCC
ATCCGCACATGTTTGTATGCCTTTGTCTGGCATGAATGCGACCATAAACT
TAAGGAGGTATACACTCGGATTGGGGACCCCACACTTGGTTTGTCTACTA
TTCTGCCCAATAACAACTTTCCGTACACGCACACGTCACAGGGCACCCAA
ACCATGATTAAGTCGAGCTCCACTACCACCAGCACCTGGTCGCAAGCCCT
GCCCCCGCAATACT
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Coding sequence (CDS) from alignment at scaffold_1:197230..199193-

>mRNA_1292 ID=mRNA_1292|Name=jgi.p|Nanoce1779_2|571629|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_1:197230..199193- (Nannochloropsis oceanica)
TTCATGAAGCTCCTCTACACGATGCTTAAGGAGTCCTACCCTGCCAGAGG
TGAGCTGTTCTTAGTCCTAGGCGTCAATTTCATCTTTCGTAAGATCTGGG
AGAATTTGGTTTCAGTCTTCCTTGATGCCAAGAGTCGGAGTGCGACACAT
TTGTTGAAGGATAAGACGGAATTGCTTGATTTCATTGATGAGGAGCAGCT
AGTGGATTGGTTGGGAGGGAAGCTGCCCTACACGTTCGAACCACCTGTGG
AGGAGTGAGCAATCCGCCTACTGGCCGAATGGAACGGGAACATCAAGGAC
GCCGTGCTCAATGGAGAGAAAGGCCGGGAATGGAAGAAAGCTAACCTGCC
CATTTCCCGCTCTGAAGTCATGCCTACGCTCAAGACAGGCAAATTTGTCT
TTGCGGGTTACGATAAAGTGGGCCGGGCTGTCTGCTACTACCGCGTCAAG
CTGCACGACCCGAAAAAGTTCACGGCCCTGGAATCCGTCCGAGCGGTGGT
ATATAATTATGAGCAGATGCTGGCGGAGGGCAAGCTGCGGGGGGCGGGGG
AGATATGTGTCGTGGTTGATCGGACGGACGCCAAAAGCAGTAACATGGAC
ATCGAGATGATCCACTACATCCGGGAGTCGGGCATCACCCCCGAGGAGGC
GGATGATGACGAGTTCATGAAGCTCCTCTACACGATGCTTAAGGAGTCCT
ACCCTGCCAGAGGTGAGCTGTTCTTAGTCCTAGGCGTCAATTTCATCTTT
CGTAAGATCTGGGAGAATTTGGTTTCAGTCTTCCTTGATGCCAAGAGTCG
GAGTGCGACACATTTGTTGAAGGATAAGACGGAATTGCTTGATTTCATTG
ATGAGGAGCAGCTAGTGGATTGGTTGGGAGGGAAGCTGCCCTACACGTTC
GAACCACCTGTGGAGGAGTGAGCAATCCGCCTACTGGCCGAATGGAACGG
GAACATCAAGGACGCCGTGCTCAATGGAGAGAAAGGCCGGGAATGGAAGA
AAGCTAACCTGCCCATTTCCCGCTCTGAAGTCATGCCTACGCTCAAGACA
GGCAAATTTGTCTTTGCGGGTTACGATAAAGTGGGCCGGGCTGTCTGCTA
CTACCGCGTCAAGCTGCACGACCCGAAAAAGTTCACGGCCCTGGAATCCG
TCCGAGCGGTGGTATATAATTATGAGCAGATGCTGGCGGAGGGCAAGCTG
CGGGGGGCGGGGGAGATATGTGTCGTGGTTGATCGGACGGACGCCAAAAG
CAGTAACATGGACATCGAGATGATCCACTACATCCGGGAGTCGGGCATCA
CCCCCGAGGAGGCGGATGATGACGAGTTCATGAAGCTCCTCTACACGATG
CTTAAGGAGTCCTACCCTGCCAGAGGTGAGCTGTTCTTAGTCCTAGGCGT
CAATTTCATCTTTCGTAAGATCTGGGAGAATTTGGTTTCAGTCTTCCTTG
ATGCCAAGAGTCGGAGTGCGACACATTTGTTGAAGGATAAGACGGAATTG
CTTGATTTCATTGATGAGGAGCAGCTAGTGGATTGGTTGGGAGGGAAGCT
GCCCTACACGTTCGAACCACCTGTGGAGGAGTGAGCAATCCGCCTACTGG
CCGAATGGAACGGGAACATCAAGGACGCCGTGCTCAATGGAGAGAAAGGC
CGGGAATGGAAGAAAGCTAACCTGCCCATTTCCCGCTCTGAAGTCATGCC
TACGCTCAAGACAGGCAAATTTGTCTTTGCGGGTTACGATAAAGTGGGCC
GGGCTGTCTGCTACTACCGCGTCAAGCTGCACGACCCGAAAAAGTTCACG
GCCCTGGAATCCGTCCGAGCGGTGGTATATAATTATGAGCAGATGCTGGC
GGAGGGCAAGCTGCGGGGGGCGGGGGAGATATGTGTCGTGGTTGATCGGA
CGGACGCCAAAAGCAGTAACATGGACATCGAGATGATCCACTACATCCGG
GAGTCGGGCATCACCCCCGAGGAGGCGGATGATGACGAG
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Synonyms
Publications