jgi.p|Nanoce1779_2|572408, mRNA_1496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572408
Unique NamemRNA_1496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1538
Alignment locationscaffold_1:776992..778933 -

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Properties
Property NameValue
TranscriptId572494
TrackFilteredModels2
ProteinId572408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:776992..778933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572408gene_1496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572408mRNA_1496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1496CDS_1496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1496 ID=mRNA_1496|Name=jgi.p|Nanoce1779_2|572408|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp
GAGGAAGGCGGCGTAGGTTGTAAGCAGGCTCGTCCTCGAGTGTGAGCTCG
TTTCCCGTCGTCCCTGTCTTACATGGGCATGGGAGTGGTATGGGACAGTT
AGAATGGAGAGATTGAATTGCCAAAAGTCTTAGCCGTGGCCAAAAGGAGG
CATCCGGTGTCAAGAGAGGTGAGTTAGAGGCAGGGGGCATGGGCCTCTAT
GCCGGAAACGCCGCTCTCTCCTCCAACGGCTGCAGCTGCAGGTCAAGCAA
GTGCGATGATGAATGATGTCATTTGAGATTAAGGTCAAGGAGATTAAGGG
CTCTATGACACTCCAAATGCGTATCATGGCACCTTCATCTTGTCAGTTAC
GTCAACTTGGCAAGTCCACTTACACTCATCTTCCTTTTTTGCCACAGGAA
AACTGCTGGCACCGGCCCGTCTGCTTAGCCTCCCACCAGTTTCCGAGTAT
CTTGCAACAAACTTTTTGACCCGCTTGCCCTAAGCAGAAAATGGTGAAGC
GGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAGATGTACGCT
AAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCGCATCAAGCG
ACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCAAACAGGTAC
CCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGTGGTACATCCT
GAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAATTTCAAGCTTA
CTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACCCGCCCCCGCC
CTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCAATTGATCCCC
AACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGTCCATTTGCAA
GCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTCAGCGAGAAAT
CTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCATGGGCCCACC
GCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGATCCAGCACCA
TGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAACAATTTCAACA
CTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTTCTTCCCGCAC
GCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATAATCAACGAGA
CTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAGAAGAAAGGTT
CCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAAGGAGTCCGGT
AAGGGGGCGGATGCCGCGGCCCTCCCGATGGCGGGCAATATTCGGGCCCG
ACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGATGGTTGCAAG
AAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCTGCATAAGCGG
AAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAATTTTTTAGGAG
AAAAGGGCCAAAAGATCAAAAAGTAACACCTATTTAAA
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protein sequence of jgi.p|Nanoce1779_2|572408

>mRNA_1496-protein ID=mRNA_1496-protein|Name=jgi.p|Nanoce1779_2|572408|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MVKRDVSSIKNKAKRREMYAKVKVEKKRDRKAERIKRQKEAQELGEEAPP
KQVPRTLDNTREVDETVVHPEDEEVLADEAEDEFQAYFVGSQAAKILITT
RPRPSRELFHFVGDLMQLIPNAFFYPRKSFEVKSICKHAEQGGFTHVFIL
SEKSKVCNGLLVSHLPHGPTAFFKVSNVVPGAKIQHHGQPTAHVPELILN
NFNTRLGHRIGRFLGSFFPHAPEFRGRQVVTFHNQRDFLFVRHHRYMFDE
KKGSKPATAAIGGKKKKESGKGADAAALPMAGNIRARLQELGPRFTLKLR
WLQEGTFDTQFGEYEWLHKRKEMDTTRRRFHL*
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mRNA from alignment at scaffold_1:776992..778933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1496 ID=mRNA_1496|Name=jgi.p|Nanoce1779_2|572408|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at scaffold_1:776992..778933- (Nannochloropsis oceanica)
GAGGAAGGCGGCGTAGGTTGTAAGCAGGCTCGTCCTCGAGTGTGAGCTCG
TTTCCCGTCGTCCCTGTCTTACATGGGCATGGGAGTGGTATGGGACAGTT
AGAATGGAGAGATTGAATTGCCAAAAGTCTTAGCCGTGGCCAAAAGGAGG
CATCCGGTGTCAAGAGAGGTGAGTTAGAGGCAGGGGGCATGGGCCTCTAT
GCCGGAAACGCCGCTCTCTCCTCCAACGGCTGCAGCTGCAGGTCAAGCAA
GTGCGATGATGAATGATGTCATTTGAGATTAAGGTCAAGGAGATTAAGGG
CTCTATGACACTCCAAATGCGTATCATGGCACCTTCATCTTGTCAGTTAC
GTCAACTTGGCAAGTCCACTTACACTCATCTTCCTTTTTTGCCACAGGAA
AACTGCTGGCACCGGCCCGTCTGCTTAGCCTCCCACCAGTTTCCGAGTAT
CTTGCAACAAACTTTTTGACCCGCTTGCCCTAAGCAGAAAATGGTGAAGC
GGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAGATGTACGCT
AAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCGCATCAAGCG
ACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCAAACAGGTAC
TCTTTGATTTGGAGTGGAAAGAGGGCTAGGATTGAGATTTATGAATGTGG
AGGGGGAAGGAAGAGGAAGACATCTATTTTGGTGCCTTACGCGTCTTGGG
GCTGTCGCAGATGTCCCATATTTGTTTTTTGCATCCCTCGTGCGGGGCGG
AAAGCTACGGAATGGAGAGGTTGGATTACCAAGTCCAGCCATGTGTTAAC
TTGCCTGCATACTTATCTATTGGACTCCTCGTGAAATGTCTTTGCTTATA
TTCACATCCTTGCAAGGAGAGGCTGCAACTTGAAATCATTAAAATCTGTT
AGACCCGTCCGGGAGGGAAAGCAAAGATAGTGTAAGCGCCACAACCAGAC
AGTCAAAACTCACAATCCCCTCCCCCATCCACCCCTTCCGGCATATCAAG
GTACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGTGGTACA
TCCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAATTTCAAG
CTTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACCCGCCCC
CGCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCAATTGAT
CCCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGTCCATTT
GCAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTCAGCGAG
AAATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCATGGGCC
CACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGATCCAGC
ACCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAACAATTTC
AACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTTCTTCCC
GCACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATAATCAAC
GAGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAGAAGAAA
GGTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAAGGAGTC
CGGTAAGGGGGCGGATGCCGCGGCCCTCCCGATGGCGGGCAATATTCGGG
CCCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGATGGTTG
CAAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCTGCATAA
GCGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAATTTTTTA
GGAGAAAAGGGCCAAAAGATCAAAAAGTAACACCTATTTAAA
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Coding sequence (CDS) from alignment at scaffold_1:776992..778933-

>mRNA_1496 ID=mRNA_1496|Name=jgi.p|Nanoce1779_2|572408|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_1:776992..778933- (Nannochloropsis oceanica)
GTACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGTGGTACA
TCCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAATTTCAAG
CTTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACCCGCCCC
CGCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCAATTGAT
CCCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGTCCATTT
GCAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTCAGCGAG
AAATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCATGGGCC
CACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGATCCAGC
ACCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAACAATTTC
AACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTTCTTCCC
GCACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATAATCAAC
GAGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAGAAGAAA
GGTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAAGGAGTC
CGGTAAGGGGGCGGATGCCGCGGCCCTCCCGATGGCGGGCAATATTCGGG
CCCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGATGGTTG
CAAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCTGCATAA
GCGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAAATGGTGA
AGCGGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAGATGTAC
GCTAAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCGCATCAA
GCGACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCAAACAGG
TACCCCGCACATTGGACAACACCCGAGAAGTAGACGAGACAGTGGTACAT
CCTGAGGACGAAGAGGTCTTGGCCGACGAAGCAGAAGATGAATTTCAAGC
TTACTTCGTGGGCAGTCAAGCGGCAAAGATTCTCATTACTACCCGCCCCC
GCCCTTCCCGGGAGCTCTTTCATTTTGTTGGCGACCTCATGCAATTGATC
CCCAACGCATTTTTCTATCCCCGGAAAAGTTTCGAGGTCAAGTCCATTTG
CAAGCACGCCGAGCAAGGTGGATTCACGCACGTCTTTATCCTCAGCGAGA
AATCTAAAGTCTGTAACGGCCTTCTCGTCTCCCACCTTCCCCATGGGCCC
ACCGCCTTCTTCAAGGTTTCCAATGTCGTGCCTGGCGCCAAGATCCAGCA
CCATGGCCAGCCCACAGCCCATGTTCCTGAACTCATCCTCAACAATTTCA
ACACTCGCCTGGGCCACCGTATCGGCCGGTTTCTTGGCTCTTTCTTCCCG
CACGCACCCGAGTTTCGTGGCCGTCAAGTGGTGACGTTTCATAATCAACG
AGACTTTCTGTTTGTGCGACATCACCGGTACATGTTTGACGAGAAGAAAG
GTTCCAAGCCCGCGACTGCTGCCATCGGGGGAAAGAAGAAGAAGGAGTCC
GGTAAGGGGGCGGATGCCGCGGCCCTCCCGATGGCGGGCAATATTCGGGC
CCGACTTCAGGAATTGGGTCCGCGCTTCACCCTCAAGCTAAGATGGTTGC
AAGAAGGCACGTTTGACACCCAGTTTGGAGAGTACGAATGGCTGCATAAG
CGGAAGGAGATGGACACGACCCGGCGTCGTTTCCACTTGTAAATGGTGAA
GCGGGATGTGTCTTCGATCAAAAACAAGGCGAAGCGCCGGGAGATGTACG
CTAAGGTTAAGGTCGAGAAGAAGAGAGATAGGAAGGCGGAGCGCATCAAG
CGACAGAAGGAGGCGCAGGAGCTGGGAGAGGAGGCACCACCCAAACAG
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Synonyms
Publications