jgi.p|Nanoce1779_2|572339, mRNA_1480 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572339
Unique NamemRNA_1480
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1635
Alignment locationscaffold_1:738595..740315 -

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Properties
Property NameValue
TranscriptId572425
TrackFilteredModels2
ProteinId572339
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:738595..740315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572339gene_1480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572339mRNA_1480-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1480CDS_1480Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1480 ID=mRNA_1480|Name=jgi.p|Nanoce1779_2|572339|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
AACCTGTCAAAGTCGCTAGTAAAACTCGGACCAAATTAAGGGATGAATGT
GCAACTATTGATTGTTGGAAGGCTCCCCTTCGTATGCAGAGGATGCAGGT
TGCATGCGATAGTTCTAGAGGGATGTAGGAACGGCGAAATTATCTCCGAC
AACGAACGAACTAACGACTCGGACTCGGATAATGATGTCACCCGGATGAA
TCGCATGCTTGACTCAAAAGTTATTGCTTGCGTTCCGGCAGTCATGAGAC
CAATGGCTGGTCATCTCAAGCTAGTCTCCCCTCCCGTGTTGCCTTGCTCC
TTCATTTATCTGCCAGACCAATACCGCTTAGGTGTACCATTTTCCAAAGA
TACAACCTGGTTTTCCGCCCGTCTCCCAAGCACATACGCCCACCAGCAGG
GATGGAGACTGCCTCTCTGAACGCGAGGTAAGTGCTGAGGACAGTAAGAA
TGTCTATATTTGATCAGTGGGGGCCGCTTGGGCTTGCCTACCAGGCTCAA
ATTTGCCTCCCATCATCCTAATACAAGCACGCGCGCTTCTTCGACTGCCG
GTCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGC
AGCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTT
GTCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGG
TATGTATATCGGGCACTCTTCCATTCCACGGTTGCCTGCCCCCTTCACAG
TGATGTTGTTCATATTCTCATTCTTGGCGTAAACAATTTATTTTACAGCA
TTTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGG
AGAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCG
TCCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGG
CGATTCAGGCGTGGGCAAGACAAGTCTGATGATGCGGTACTCGGAGGACG
AGTTTGCACCCTGTTTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGG
CATCTGGCGCTGGAGGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGA
CACGGCGGGACAGGAGCGCATGCACGTCATTACACGCACATACTACAAGG
GCAGCCACGGCATAGCGCTAATCTACAACCTGGCGGACCCGGACTCATTC
AAGAACGTAAACTACTGGATGGCTAATATCCAGCAGCATGCGGGTGACAA
GGTGGTGAAAGTTTTGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAA
TTCCCTACGAACAGGGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACAT
TTCTATGAGACCTCGGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAA
TGCGCTGGCCATGGACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGG
CAGCGGCGGCGGCAGCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGG
AGCAAGAAACAGTGCGTGATTTGTTGAATGAGAGACAAATCACATCAAAC
ATCTCCCTCCATTCATTCTCTGTCCAGAATGCGGCTCGGAGGAGCCGAAT
AACGGGTGAAAAAGAAATCTCCATAGATATGTACA
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protein sequence of jgi.p|Nanoce1779_2|572339

>mRNA_1480-protein ID=mRNA_1480-protein|Name=jgi.p|Nanoce1779_2|572339|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MSIRILLLGDSGVGKTSLMMRYSEDEFAPCLLSTAGVDFKVRHLALEESK
KKVKVQIWDTAGQERMHVITRTYYKGSHGIALIYNLADPDSFKNVNYWMA
NIQQHAGDKVVKVLIGNKADLADRAIPYEQGAAMAKEFGFVHFYETSAKT
GANVHEAFNALAMDIVRRIEEAQTEAAAAAAMAAGGGPLGNGSKKQCVIC
*
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mRNA from alignment at scaffold_1:738595..740315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1480 ID=mRNA_1480|Name=jgi.p|Nanoce1779_2|572339|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp|location=Sequence derived from alignment at scaffold_1:738595..740315- (Nannochloropsis oceanica)
AACCTGTCAAAGTCGCTAGTAAAACTCGGACCAAATTAAGGGATGAATGT
GCAACTATTGATTGTTGGAAGGCTCCCCTTCGTATGCAGAGGATGCAGGT
TGCATGCGATAGTTCTAGAGGGATGTAGGAACGGCGAAATTATCTCCGAC
AACGAACGAACTAACGACTCGGACTCGGATAATGATGTCACCCGGATGAA
TCGCATGCTTGACTCAAAAGTTATTGCTTGCGTTCCGGCAGTCATGAGAC
CAATGGCTGGTCATCTCAAGCTAGTCTCCCCTCCCGTGTTGCCTTGCTCC
TTCATTTATCTGCCAGACCAATACCGCTTAGGTGTACCATTTTCCAAAGA
TACAACCTGGTTTTCCGCCCGTCTCCCAAGCACATACGCCCACCAGCAGG
GATGGAGACTGCCTCTCTGAACGCGAGGTAAGTGCTGAGGACAGTAAGAA
TGTCTATATTTGATCAGTGGGGGCCGCTTGGGCTTGCCTACCAGGCTCAA
ATTTGCCTCCCATCATCCTAATACAAGCACGCGCGCTTCTTCGACTGCCG
GTCCCAGGGAAGGCTCATCGCTTCACCCCTCGCCTGCACCGTCGCCACGC
AGCAGCGGTAGATCACGGAGCAAGTCCAGCAGCAAGCGCCAGGCCGGCTT
GTCCCAAAAGACACTAAATATTGTCAACAACTTGCAGCCCTCCTCTGTGG
TATGTATATCGGGCACTCTTCCATTCCACGGTTGCCTGCCCCCTTCACAG
TGATGTTGTTCATATTCTCATTCTTGGCGTAAACAATTTATTTTACAGCA
TTTAAAAGAGAGGGAAGACGAGGAAGAAGAGCGATTACTGGCATTAGAGG
AGAAGAGGAGGCAGGCGGCAGCCAAAGAGTCCTGCTCGTTATCCTCTGCG
TCCGCGGCGGAGTACACAGAATTTATGAGTATACGCATCCTTTTGCTGGG
CGATTCAGGTACCGGTCTTGAAAATTAATATGCTGACGAATGTCCTACTG
TTGAAAATTCAAGTCCTTCTCGCCTCTTTTTTGATTTCTCACAGGCGTGG
GCAAGACAAGTCTGATGATGCGGTACTCGGAGGACGAGTTTGCACCCTGT
TTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGGCATCTGGCGCTGGA
GGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGACACGGCGGGACAGG
AGCGCATGCACGTCATTACACGCACATACTACAAGGGCAGCCACGGCATA
GCGCTAATCTACAACCTGGCGGACCCGGACTCATTCAAGAACGTAAACTA
CTGGATGGCTAATATCCAGCAGCATGCGGGTGACAAGGTGGTGAAAGTTT
TGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAATTCCCTACGAACAG
GGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACATTTCTATGAGACCTC
GGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAATGCGCTGGCCATGG
ACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGGCAGCGGCGGCGGCA
GCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGGAGCAAGAAACAGTG
CGTGATTTGTTGAATGAGAGACAAATCACATCAAACATCTCCCTCCATTC
ATTCTCTGTCCAGAATGCGGCTCGGAGGAGCCGAATAACGGGTGAAAAAG
AAATCTCCATAGATATGTACA
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Coding sequence (CDS) from alignment at scaffold_1:738595..740315-

>mRNA_1480 ID=mRNA_1480|Name=jgi.p|Nanoce1779_2|572339|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_1:738595..740315- (Nannochloropsis oceanica)
GCGTGGGCAAGACAAGTCTGATGATGCGGTACTCGGAGGACGAGTTTGCA
CCCTGTTTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGGCATCTGGC
GCTGGAGGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGACACGGCGG
GACAGGAGCGCATGCACGTCATTACACGCACATACTACAAGGGCAGCCAC
GGCATAGCGCTAATCTACAACCTGGCGGACCCGGACTCATTCAAGAACGT
AAACTACTGGATGGCTAATATCCAGCAGCATGCGGGTGACAAGGTGGTGA
AAGTTTTGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAATTCCCTAC
GAACAGGGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACATTTCTATGA
GACCTCGGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAATGCGCTGG
CCATGGACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGGCAGCGGCG
GCGGCAGCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGGAGCAAGAA
ACAGTGCGTGATTTGTTGAATGAGTATACGCATCCTTTTGCTGGGCGATT
CAGGCGTGGGCAAGACAAGTCTGATGATGCGGTACTCGGAGGACGAGTTT
GCACCCTGTTTATTGAGTACGGCGGGAGTGGACTTCAAGGTGCGGCATCT
GGCGCTGGAGGAGAGCAAGAAGAAGGTGAAGGTGCAGATCTGGGACACGG
CGGGACAGGAGCGCATGCACGTCATTACACGCACATACTACAAGGGCAGC
CACGGCATAGCGCTAATCTACAACCTGGCGGACCCGGACTCATTCAAGAA
CGTAAACTACTGGATGGCTAATATCCAGCAGCATGCGGGTGACAAGGTGG
TGAAAGTTTTGATCGGCAACAAGGCTGACCTCGCCGATCGCGCAATTCCC
TACGAACAGGGCGCCGCCATGGCCAAGGAATTTGGCTTCGTACATTTCTA
TGAGACCTCGGCCAAGACGGGAGCCAACGTGCATGAGGCCTTCAATGCGC
TGGCCATGGACATTGTGCGCCGTATCGAAGAGGCTCAGACCGAGGCAGCG
GCGGCGGCAGCGATGGCCGCGGGCGGAGGTCCACTGGGAAATGGGAGCAA
GAAACAGTGCGTGATTTGTTGAATGAGTATACGCATCCTTTTGCTGGGCG
ATTCAG
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Synonyms
Publications