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Properties
Property Name | Value |
TranscriptId | 572730 |
Track | FilteredModels2 |
ProteinId | 572644 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:913872..914740 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1542 ID=mRNA_1542|Name=jgi.p|Nanoce1779_2|572644|organism=Nannochloropsis oceanica|type=mRNA|length=869bp ACAGGTCCCTCCTCCCAACAACTCTCCACATCAACCATATACTATGCGTT CCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGCCTTCGTC ATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCAAGAGCAA GGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCCCTCCCCG CGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTTTGACTTC ACTTACCTAATGGTGCCTACAAAGTGGGACGAGTCCCGCACTGGCCTGTC CGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGCTTCGCCA TGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCGTTTGCCG GTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATGTATTCGT CAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTTCTAGAGG TAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGACCGAGCG GCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACCCGTCTAA GTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTTGCCATGC TCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAGTGGCTTC CCTTACTACCAGTAAAGGATGAGTCGAGAGCCCTAGCCAACAGCGAAAAC CGAAACAGCAGAACAAGGAGCCACAGGATGAAGAAAAGCAGGAGCAGGAG CAGCAGCAACAATTACGGTGCAAACCCTCGCCACTGGATGGCTGGCGTGT GACTTTTTGTGTGTAGAAG back to topprotein sequence of jgi.p|Nanoce1779_2|572644 >mRNA_1542-protein ID=mRNA_1542-protein|Name=jgi.p|Nanoce1779_2|572644|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp MRSITIVLAATAALSSAFVMPSTPKAPATQLSVKSKAVPFLEAPKALDGS LPADVGFDPLGLSDIGFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGR FAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGF LEVVMGAAIYEMSKGSDRAAGEFSFDPLGLGKDPSKYARYQVSEIKNGRL AMLAFGGIATQAVLTNSGFPYYQ* back to topmRNA from alignment at scaffold_1:913872..914740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1542 ID=mRNA_1542|Name=jgi.p|Nanoce1779_2|572644|organism=Nannochloropsis oceanica|type=mRNA|length=869bp|location=Sequence derived from alignment at scaffold_1:913872..914740+ (Nannochloropsis oceanica) ACAGGTCCCTCCTCCCAACAACTCTCCACATCAACCATATACTATGCGTT
CCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGCCTTCGTC
ATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCAAGAGCAA
GGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCCCTCCCCG
CGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTTTGACTTC
ACTTACCTAATGGTGCCTACAAAGTGGGACGAGTCCCGCACTGGCCTGTC
CGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGCTTCGCCA
TGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCGTTTGCCG
GTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATGTATTCGT
CAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTTCTAGAGG
TAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGACCGAGCG
GCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACCCGTCTAA
GTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTTGCCATGC
TCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAGTGGCTTC
CCTTACTACCAGTAAAGGATGAGTCGAGAGCCCTAGCCAACAGCGAAAAC
CGAAACAGCAGAACAAGGAGCCACAGGATGAAGAAAAGCAGGAGCAGGAG
CAGCAGCAACAATTACGGTGCAAACCCTCGCCACTGGATGGCTGGCGTGT
GACTTTTTGTGTGTAGAAG back to topCoding sequence (CDS) from alignment at scaffold_1:913872..914740+ >mRNA_1542 ID=mRNA_1542|Name=jgi.p|Nanoce1779_2|572644|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_1:913872..914740+ (Nannochloropsis oceanica) ATGCGTTCCATCACCATCGTGCTCGCTGCCACCGCCGCCCTCTCCTCTGC CTTCGTCATGCCCTCCACCCCCAAGGCCCCCGCGACCCAGCTGTCCGTCA AGAGCAAGGCTGTGCCCTTCCTCGAGGCGCCTAAGGCATTGGACGGGTCC CTCCCCGCGGACGTGGGTTTTGACCCCCTTGGCTTGTCTGATATTGGCTT TGACTTCACTTACCTAATGGTGCCTACAAAGTGGGACGAGTCCCGCACTG GCCTGTCCGCGCTCAAGTGGTTCAGGGAAGCCGAGATCAAGCACGGCCGC TTCGCCATGCTTGCGGTGTTGGGCTGGGTAGCTGTGGACATGGGCCTGCG TTTGCCGGTTGCCAAGTACGCGGGGTACAATGCCGTGCAGGCGCACGATG TATTCGTCAAGAGCGGCGACATGACCGTTGGCCTGTTGGCGATCGGGTTT CTAGAGGTAGTGATGGGTGCGGCGATCTACGAGATGAGCAAGGGCTCGGA CCGAGCGGCGGGCGAGTTTAGCTTTGACCCCCTTGGCTTGGGCAAGGACC CGTCTAAGTATGCGCGGTACCAGGTGTCCGAGATCAAGAACGGCCGCCTT GCCATGCTCGCATTTGGTGGGATCGCCACCCAAGCGGTGCTGACCAACAG TGGCTTCCCTTACTACCAGTAA back to top
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