jgi.p|Nanoce1779_2|572873, mRNA_1610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572873
Unique NamemRNA_1610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1452
Alignment locationscaffold_1:1071355..1072806 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572959
TrackFilteredModels2
ProteinId572873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1071355..1072806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572873gene_1610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572873mRNA_1610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1610CDS_1610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1610 ID=mRNA_1610|Name=jgi.p|Nanoce1779_2|572873|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ACGACAGATAGCATGCGTCCATCATCATCGTGGTCCGCAGTAGTCCTCCT
ACCAATAGCAGTGGCGGCGCTGTTGATAGTCCCAACCGAGACATTTTTCT
TGGGGTCCAAGACCAGCTTCACGACCTCCCCACCCCATGCCCTGGCATCT
CGAACAAGAAGGATGGTCGCGAACGTGGCCATGCAGGAGCAGGAAGAGAC
GACAAAGGTGACAAGCAGAGCAAAGGAGGTCACTACTGCTCACCGCCGGG
CAGTTTTTGCCACGACCGCAGGCGCGCTGACCTCCTCCTGGCTGCTTTCC
TCGTCCTCCTCATCCTCGCCCAACAAGGGCCAGGCAGCCACCCTGCCCAC
GGCAGCCTCGCCCACTACACCAGTTGTTAAGGGCAATGGGGTTTGTAATG
ATGCTATCTCCCACCTCCGCAACCCCAAAACGGGACAAGACATCTATATG
ATCGGCACTGCGCATATCAGCAATGAAAGTGCCATCCTTGTCCGCTCCAC
CATCAGGGCCCTCCGTCCACAAACTGTTATGCTTGAGCTCGACGCCAGCC
GCATCGGCCGTCTTGCCAGCGCCGACAACAGCACTTCAGTTCCTCCATCT
TCTCCGTCGGCATCCACCACCATCACCGCCTCCAGCGCCACCCAAGATCC
TTCCCTCCCTCCCATCAAATTTATCATCCCTCCCCCCCCCCTTGGCTCCA
TCCTTCCCCCCACCAACGCCCCCTCCCTCCTTCCCAAACAAGGTGAAGGG
AAAAAAGGCTTTCTCAAAGCCGCTCTGGGGGAGCTGACGCGCGCAGGGAG
CAATTTTCGCGAGAAATTGATAGGTGTGGGTGCAGTGGTGGTGGGACAGG
TTATTTCGGGTCTGTATAGAGGCTTGGATAAAATGGGATTTGTGTCTGGA
CAGGAATTTATTGTGGCAATGGAGGAGGGGAGAAAGGTAGGTGCGGATCT
GTTGCTCGGAGATCAGAATGTGCAGGTGACGTTGAGGAGGCTTTCGGATG
CCTTGTCGAAGAGCGAATTGGTAAAGGTCCGGGAGATGGAATCGCCTACG
CGTTCTCCGGCGGCAAGAGAGTTGGAAGCACGAGGGATTAAGATGGGGGG
GAATGATAAGGCGGAATTAGCGGTGGCGGTTGAGGCGTTAAAGGAGCGGG
CGTCGGTGCGCGCGTTGATGAGTACGTTGCAGAGTGAGTTGCCCGAGGTT
TATAAGGCGATGATAGAGGAGAGAGATGCGTATATGAGTGCGAGTTTGTT
GGGATGTAAGAGTAAGGTGATTGTGGGGGTGGTAGGCATCGGGCACCTGG
ATGGGATCGAGCGCAATTTGGGGAGAGAGGGTTTTGTGAGCGTGCCGTGT
CGTCTTGCACAGGGGCAGTAAAAGGGGGATTGAATGAAGTAGAAAGCAGT
ATACGATAAATTAGGTAAGAGTAACATGCGAATGAATCATTTTGTTAGTG
AG
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protein sequence of jgi.p|Nanoce1779_2|572873

>mRNA_1610-protein ID=mRNA_1610-protein|Name=jgi.p|Nanoce1779_2|572873|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MRPSSSWSAVVLLPIAVAALLIVPTETFFLGSKTSFTTSPPHALASRTRR
MVANVAMQEQEETTKVTSRAKEVTTAHRRAVFATTAGALTSSWLLSSSSS
SSPNKGQAATLPTAASPTTPVVKGNGVCNDAISHLRNPKTGQDIYMIGTA
HISNESAILVRSTIRALRPQTVMLELDASRIGRLASADNSTSVPPSSPSA
STTITASSATQDPSLPPIKFIIPPPPLGSILPPTNAPSLLPKQGEGKKGF
LKAALGELTRAGSNFREKLIGVGAVVVGQVISGLYRGLDKMGFVSGQEFI
VAMEEGRKVGADLLLGDQNVQVTLRRLSDALSKSELVKVREMESPTRSPA
ARELEARGIKMGGNDKAELAVAVEALKERASVRALMSTLQSELPEVYKAM
IEERDAYMSASLLGCKSKVIVGVVGIGHLDGIERNLGREGFVSVPCRLAQ
GQ*
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mRNA from alignment at scaffold_1:1071355..1072806+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1610 ID=mRNA_1610|Name=jgi.p|Nanoce1779_2|572873|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at scaffold_1:1071355..1072806+ (Nannochloropsis oceanica)
ACGACAGATAGCATGCGTCCATCATCATCGTGGTCCGCAGTAGTCCTCCT
ACCAATAGCAGTGGCGGCGCTGTTGATAGTCCCAACCGAGACATTTTTCT
TGGGGTCCAAGACCAGCTTCACGACCTCCCCACCCCATGCCCTGGCATCT
CGAACAAGAAGGATGGTCGCGAACGTGGCCATGCAGGAGCAGGAAGAGAC
GACAAAGGTGACAAGCAGAGCAAAGGAGGTCACTACTGCTCACCGCCGGG
CAGTTTTTGCCACGACCGCAGGCGCGCTGACCTCCTCCTGGCTGCTTTCC
TCGTCCTCCTCATCCTCGCCCAACAAGGGCCAGGCAGCCACCCTGCCCAC
GGCAGCCTCGCCCACTACACCAGTTGTTAAGGGCAATGGGGTTTGTAATG
ATGCTATCTCCCACCTCCGCAACCCCAAAACGGGACAAGACATCTATATG
ATCGGCACTGCGCATATCAGCAATGAAAGTGCCATCCTTGTCCGCTCCAC
CATCAGGGCCCTCCGTCCACAAACTGTTATGCTTGAGCTCGACGCCAGCC
GCATCGGCCGTCTTGCCAGCGCCGACAACAGCACTTCAGTTCCTCCATCT
TCTCCGTCGGCATCCACCACCATCACCGCCTCCAGCGCCACCCAAGATCC
TTCCCTCCCTCCCATCAAATTTATCATCCCTCCCCCCCCCCTTGGCTCCA
TCCTTCCCCCCACCAACGCCCCCTCCCTCCTTCCCAAACAAGGTGAAGGG
AAAAAAGGCTTTCTCAAAGCCGCTCTGGGGGAGCTGACGCGCGCAGGGAG
CAATTTTCGCGAGAAATTGATAGGTGTGGGTGCAGTGGTGGTGGGACAGG
TTATTTCGGGTCTGTATAGAGGCTTGGATAAAATGGGATTTGTGTCTGGA
CAGGAATTTATTGTGGCAATGGAGGAGGGGAGAAAGGTAGGTGCGGATCT
GTTGCTCGGAGATCAGAATGTGCAGGTGACGTTGAGGAGGCTTTCGGATG
CCTTGTCGAAGAGCGAATTGGTAAAGGTCCGGGAGATGGAATCGCCTACG
CGTTCTCCGGCGGCAAGAGAGTTGGAAGCACGAGGGATTAAGATGGGGGG
GAATGATAAGGCGGAATTAGCGGTGGCGGTTGAGGCGTTAAAGGAGCGGG
CGTCGGTGCGCGCGTTGATGAGTACGTTGCAGAGTGAGTTGCCCGAGGTT
TATAAGGCGATGATAGAGGAGAGAGATGCGTATATGAGTGCGAGTTTGTT
GGGATGTAAGAGTAAGGTGATTGTGGGGGTGGTAGGCATCGGGCACCTGG
ATGGGATCGAGCGCAATTTGGGGAGAGAGGGTTTTGTGAGCGTGCCGTGT
CGTCTTGCACAGGGGCAGTAAAAGGGGGATTGAATGAAGTAGAAAGCAGT
ATACGATAAATTAGGTAAGAGTAACATGCGAATGAATCATTTTGTTAGTG
AG
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Coding sequence (CDS) from alignment at scaffold_1:1071355..1072806+

>mRNA_1610 ID=mRNA_1610|Name=jgi.p|Nanoce1779_2|572873|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_1:1071355..1072806+ (Nannochloropsis oceanica)
ATGCGTCCATCATCATCGTGGTCCGCAGTAGTCCTCCTACCAATAGCAGT
GGCGGCGCTGTTGATAGTCCCAACCGAGACATTTTTCTTGGGGTCCAAGA
CCAGCTTCACGACCTCCCCACCCCATGCCCTGGCATCTCGAACAAGAAGG
ATGGTCGCGAACGTGGCCATGCAGGAGCAGGAAGAGACGACAAAGGTGAC
AAGCAGAGCAAAGGAGGTCACTACTGCTCACCGCCGGGCAGTTTTTGCCA
CGACCGCAGGCGCGCTGACCTCCTCCTGGCTGCTTTCCTCGTCCTCCTCA
TCCTCGCCCAACAAGGGCCAGGCAGCCACCCTGCCCACGGCAGCCTCGCC
CACTACACCAGTTGTTAAGGGCAATGGGGTTTGTAATGATGCTATCTCCC
ACCTCCGCAACCCCAAAACGGGACAAGACATCTATATGATCGGCACTGCG
CATATCAGCAATGAAAGTGCCATCCTTGTCCGCTCCACCATCAGGGCCCT
CCGTCCACAAACTGTTATGCTTGAGCTCGACGCCAGCCGCATCGGCCGTC
TTGCCAGCGCCGACAACAGCACTTCAGTTCCTCCATCTTCTCCGTCGGCA
TCCACCACCATCACCGCCTCCAGCGCCACCCAAGATCCTTCCCTCCCTCC
CATCAAATTTATCATCCCTCCCCCCCCCCTTGGCTCCATCCTTCCCCCCA
CCAACGCCCCCTCCCTCCTTCCCAAACAAGGTGAAGGGAAAAAAGGCTTT
CTCAAAGCCGCTCTGGGGGAGCTGACGCGCGCAGGGAGCAATTTTCGCGA
GAAATTGATAGGTGTGGGTGCAGTGGTGGTGGGACAGGTTATTTCGGGTC
TGTATAGAGGCTTGGATAAAATGGGATTTGTGTCTGGACAGGAATTTATT
GTGGCAATGGAGGAGGGGAGAAAGGTAGGTGCGGATCTGTTGCTCGGAGA
TCAGAATGTGCAGGTGACGTTGAGGAGGCTTTCGGATGCCTTGTCGAAGA
GCGAATTGGTAAAGGTCCGGGAGATGGAATCGCCTACGCGTTCTCCGGCG
GCAAGAGAGTTGGAAGCACGAGGGATTAAGATGGGGGGGAATGATAAGGC
GGAATTAGCGGTGGCGGTTGAGGCGTTAAAGGAGCGGGCGTCGGTGCGCG
CGTTGATGAGTACGTTGCAGAGTGAGTTGCCCGAGGTTTATAAGGCGATG
ATAGAGGAGAGAGATGCGTATATGAGTGCGAGTTTGTTGGGATGTAAGAG
TAAGGTGATTGTGGGGGTGGTAGGCATCGGGCACCTGGATGGGATCGAGC
GCAATTTGGGGAGAGAGGGTTTTGTGAGCGTGCCGTGTCGTCTTGCACAG
GGGCAGTAA
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Synonyms
Publications