jgi.p|Nanoce1779_2|573138, mRNA_1702 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573138
Unique NamemRNA_1702
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1668
Alignment locationscaffold_1:1279089..1280989 -

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Properties
Property NameValue
TranscriptId573224
TrackFilteredModels2
ProteinId573138
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1279089..1280989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573138gene_1702Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573138mRNA_1702-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1702CDS_1702Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1702 ID=mRNA_1702|Name=jgi.p|Nanoce1779_2|573138|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
CTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCCTCTTCCCTCTCTGCAT
CCGCTTCTCCACCTTCGCGCAGCAGCAGCAGCGGTATGGAAAAGGAAGAG
CAGCGACAAGCCGAGCCGCAACTACATGCACTGGTGAAAGAGGGCTGTAC
CAGCAACAGCACCAGCGCTACTGCTGCAGGCGGGAACCATTCAAGAGAAA
AATGGAAGAAAAAGGCGGAGCATTCCATTCGTATCTCAAATTTTCAGTTC
GTGCCGTCCTCTCTCACGGTTGGCGTTGGCGACACCGTCACGTGGAAGGT
CGGTGACGATGCGATGGGCTGTCAAGAACACGTCATCCAGGGCTTGGTGT
CCCCCCCTCCCACCCCCTCTCCTCCCTCAATTTCCTCCCAAGGAGCGGAA
CTCGGGGTTTATTGTTTATTGTTTGAGTCTCCACCGTTACAGAGGGGCGA
GACATGGATGTTAGAGCTGACCGAGACCACCACCGGCTTTACAAGGACCA
TGATCGAAGGAGGAGGTAAGGTGCTTCTCCGCTGTCAAAACTACCCGGAA
GACCTGAGGGGGGTTCTGGAGGTGCGGCCTTCTCTCCCGCCCTCGTCCTT
GCTGAAGGAGGAGGGAGGGAAGGAGGGAGGTGGTTTGGTGGATGATATGG
CTGTAGGAAATGGAGAAGGAGGACAAGGAGGAAGGAAGAGGAAAAAGAGA
AAGAAGCGGAGGAAGGGTGGGAAGCATGAAGAGGACGAATGGGATGGAGT
GAAGCTGGAAGGGAAGGAGGGAGAGACGAGTGGTACAGCTGCTGCTGCTT
TCAGCACTGTGACGAAGCAGGAGGAGGAGAATCTGTATATGCCCTGTAGC
ATCACCAGCGTCAACAACAACCACAGCAGCGGCAACGGCAGCAGCAGCTC
CATGGGGCCTTTTGATCCAGGAGAAACGGGGAGCACAACGACTACAGATG
TCGGCTTCCCTCCTCTCCGCACCTGCACCAGCGCCAAGCCCAGGAAACCT
TTCTTCTCCAGCATTAATAACAACAATAAGACAATCAACAATTACGACAT
CACCACCTCTCCTACTACCACCACCACTGGCCCCTATTCCACCTCCGCCT
TCACCCCCCTCCCTTCCTCCTCCCTCTCCCTCCTCGCCCTGACCAAGATG
GCGAAAGACGGTCTCCATCCCCTTTGGGCCCCTGAGGGATTAACCCTTCC
CCGCGTCCAGCTAACGCATGAGACGTTACTGGGGACCGAGGTCGTTACAG
TGCCCGTTGGAACAACGGTCGAATGGGTCCTCCACCTCCCCACCAAGCGA
GTCCTCCCTTCCTGCTCCTCCTCCTTCTCCTCCTCGCAACAGCAGCAGAA
GCAGCAGCAGTTGCATCGTCTGATCGTGGGGTTGAATAAATTCCACGATG
GTCAAGGAAAAGGAGGTGCCGCCCCTGTCCGTCTAGCCTCCTGCCCTCGT
CCCGGAGATGTCTTTTCTTTTCTCCCTCGCTATGGCCCCTGCGATTACCT
TTTATGGAAATCAGAGGCAGAAGGTAGTGCTGGGGAATGCAGAGGGGTAC
TTCCAGGCTTCGGATGACGATGAGGAGGAGGAGGACGGGAGGGAGGAAGG
GGAGGAGGACATGGTGGATTTGGAGGCGGCGATGGGGGGATTGAAAGTTC
GACAGCTGCCGGTGCAGG
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protein sequence of jgi.p|Nanoce1779_2|573138

>mRNA_1702-protein ID=mRNA_1702-protein|Name=jgi.p|Nanoce1779_2|573138|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MEKEEQRQAEPQLHALVKEGCTSNSTSATAAGGNHSREKWKKKAEHSIRI
SNFQFVPSSLTVGVGDTVTWKVGDDAMGCQEHVIQGLVSPPPTPSPPSIS
SQGAELGVYCLLFESPPLQRGETWMLELTETTTGFTRTMIEGGGKVLLRC
QNYPEDLRGVLEVRPSLPPSSLLKEEGGKEGGGLVDDMAVGNGEGGQGGR
KRKKRKKRRKGGKHEEDEWDGVKLEGKEGETSGTAAAAFSTVTKQEEENL
YMPCSITSVNNNHSSGNGSSSSMGPFDPGETGSTTTTDVGFPPLRTCTSA
KPRKPFFSSINNNNKTINNYDITTSPTTTTTGPYSTSAFTPLPSSSLSLL
ALTKMAKDGLHPLWAPEGLTLPRVQLTHETLLGTEVVTVPVGTTVEWVLH
LPTKRVLPSCSSSFSSSQQQQKQQQLHRLIVGLNKFHDGQGKGGAAPVRL
ASCPRPGDVFSFLPRYGPCDYLLWKSEAEGSAGECRGVLPGFG*
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mRNA from alignment at scaffold_1:1279089..1280989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1702 ID=mRNA_1702|Name=jgi.p|Nanoce1779_2|573138|organism=Nannochloropsis oceanica|type=mRNA|length=1901bp|location=Sequence derived from alignment at scaffold_1:1279089..1280989- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCGTCCTCCTCCTCTTCCCTCTCTGCAT
CCGCTTCTCCACCTTCGCGCAGCAGCAGCAGCGGTATGGAAAAGGAAGAG
CAGCGACAAGCCGAGCCGCAACTACATGCACTGGTGAAAGAGGGCTGTAC
CAGCAACAGCACCAGCGCTACTGCTGCAGGCGGGAACCATTCAAGAGAAA
AATGGAAGAAAAAGGCGGAGCATTCCATTCGTATCTCAAATTTTCAGTTC
GTGCCGTCCTCTCTCACGGTTGGCGTTGGCGACACCGTCACGTGGAAGGT
CGGTGACGATGCGATGGGCTGTCAAGAACACGTCATCCAGGGCTTGGTGT
CCCCCCCTCCCACCCCCTCTCCTCCCTCAATTTCCTCCCAAGGAGCGGAA
CTCGGGGTTTATTGTTTATTGTTTGAGTCTCCACCGTTACAGAGGGGCGA
GACATGGATGTTAGAGCTGACCGAGACCACCACCGGCTTTACAAGGACCA
TGATCGAAGGAGGAGGTAAGGTGCTTCTCCGCTGTCAAAACTACCCGGAA
GACCTGAGGGGGGTTCTGGAGGTGCGGCCTTCTCTCCCGCCCTCGTCCTT
GCTGAAGGAGGAGGGAGGGAAGGAGGGAGGTGGTTTGGTGGATGATATGG
CTGTAGGAAATGGAGAAGGAGGACAAGGAGGAAGGAAGAGGAAAAAGAGA
AAGAAGCGGAGGAAGGGTGGGAAGCATGAAGAGGACGAATGGGATGGAGT
GAAGCTGGAAGGGAAGGAGGGAGAGACGAGTGGTACAGCTGCTGCTGCTT
TCAGCACTGTGACGAAGCAGGAGGAGGAGAATCTGTATATGCCCTGTAGC
ATCACCAGCGTCAACAACAACCACAGCAGCGGCAACGGCAGCAGCAGCTC
CATGGGGCCTTTTGATCCAGGAGAAACGGGGAGCACAACGACTACAGATG
TCGGCTTCCCTCCTCTCCGCACCTGCACCAGCGCCAAGCCCAGGAAACCT
TTCTTCTCCAGCATTAATAACAACAATAAGACAATCAACAATTACGACAT
CACCACCTCTCCTACTACCACCACCACTGGCCCCTATTCCACCTCCGCCT
TCACCCCCCTCCCTTCCTCCTCCCTCTCCCTCCTCGCCCTGACCAAGATG
GCGAAAGACGGTCTCCATCCCCTTTGGGCCCCTGAGGGATTAACCCTTCC
CCGCGTCCAGCTAACGCATGAGACGTTACTGGGGACCGAGGTCGTTACAG
TGCCCGTTGGAACAACGGTCGAATGGGTCCTCCACCTCCCCACCAAGCGA
GTCCTCCCTTCCTGCTCCTCCTCCTTCTCCTCCTCGCAACAGCAGCAGAA
GCAGCAGCAGTTGCATCGTCTGATCGTGGGGTTGAATAAATTCCACGATG
GTCAAGGAAAAGGAGGTGCCGCCCCTGTCCGTCTAGCCTCCTGCCCTCGT
CCCGGAGATGTCTTTTCTTTTCTGCCTGGGAGGGAGGGAGGGAGGGAGGG
GGGGAGGGAAAGGCAACTGGAACTATTTTGCCATACGTTTAAGGAAGAGG
GGATGCATATTGTGGCATGCGAAGTGGTCGGCGCGCTTATGTGCGGTATC
AAGGTAGTGCATCCGCTCCCTTCCTCGCTGTCCTCCTCGTCTTTTTCCTC
CGTCCTCCTCCCACACGCCAACAAGCTGTATACCCTTAAGGATGCCCTCC
CTCCCTCCCTCGCTATGGCCCCTGCGATTACCTTTTATGGAAATCAGAGG
CAGAAGGTAGTGCTGGGGAATGCAGAGGGGTACTTCCAGGCTTCGGATGA
CGATGAGGAGGAGGAGGACGGGAGGGAGGAAGGGGAGGAGGACATGGTGG
ATTTGGAGGCGGCGATGGGGGGATTGAAAGTTCGACAGCTGCCGGTGCAG
G
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Coding sequence (CDS) from alignment at scaffold_1:1279089..1280989-

>mRNA_1702 ID=mRNA_1702|Name=jgi.p|Nanoce1779_2|573138|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_1:1279089..1280989- (Nannochloropsis oceanica)
CTCCCTCGCTATGGCCCCTGCGATTACCTTTTATGGAAATCAGAGGCAGA
AGGTAGTGCTGGGGAATGCAGAGGGGTACTTCCAGGCTTCGGATGAATGG
AAAAGGAAGAGCAGCGACAAGCCGAGCCGCAACTACATGCACTGGTGAAA
GAGGGCTGTACCAGCAACAGCACCAGCGCTACTGCTGCAGGCGGGAACCA
TTCAAGAGAAAAATGGAAGAAAAAGGCGGAGCATTCCATTCGTATCTCAA
ATTTTCAGTTCGTGCCGTCCTCTCTCACGGTTGGCGTTGGCGACACCGTC
ACGTGGAAGGTCGGTGACGATGCGATGGGCTGTCAAGAACACGTCATCCA
GGGCTTGGTGTCCCCCCCTCCCACCCCCTCTCCTCCCTCAATTTCCTCCC
AAGGAGCGGAACTCGGGGTTTATTGTTTATTGTTTGAGTCTCCACCGTTA
CAGAGGGGCGAGACATGGATGTTAGAGCTGACCGAGACCACCACCGGCTT
TACAAGGACCATGATCGAAGGAGGAGGTAAGGTGCTTCTCCGCTGTCAAA
ACTACCCGGAAGACCTGAGGGGGGTTCTGGAGGTGCGGCCTTCTCTCCCG
CCCTCGTCCTTGCTGAAGGAGGAGGGAGGGAAGGAGGGAGGTGGTTTGGT
GGATGATATGGCTGTAGGAAATGGAGAAGGAGGACAAGGAGGAAGGAAGA
GGAAAAAGAGAAAGAAGCGGAGGAAGGGTGGGAAGCATGAAGAGGACGAA
TGGGATGGAGTGAAGCTGGAAGGGAAGGAGGGAGAGACGAGTGGTACAGC
TGCTGCTGCTTTCAGCACTGTGACGAAGCAGGAGGAGGAGAATCTGTATA
TGCCCTGTAGCATCACCAGCGTCAACAACAACCACAGCAGCGGCAACGGC
AGCAGCAGCTCCATGGGGCCTTTTGATCCAGGAGAAACGGGGAGCACAAC
GACTACAGATGTCGGCTTCCCTCCTCTCCGCACCTGCACCAGCGCCAAGC
CCAGGAAACCTTTCTTCTCCAGCATTAATAACAACAATAAGACAATCAAC
AATTACGACATCACCACCTCTCCTACTACCACCACCACTGGCCCCTATTC
CACCTCCGCCTTCACCCCCCTCCCTTCCTCCTCCCTCTCCCTCCTCGCCC
TGACCAAGATGGCGAAAGACGGTCTCCATCCCCTTTGGGCCCCTGAGGGA
TTAACCCTTCCCCGCGTCCAGCTAACGCATGAGACGTTACTGGGGACCGA
GGTCGTTACAGTGCCCGTTGGAACAACGGTCGAATGGGTCCTCCACCTCC
CCACCAAGCGAGTCCTCCCTTCCTGCTCCTCCTCCTTCTCCTCCTCGCAA
CAGCAGCAGAAGCAGCAGCAGTTGCATCGTCTGATCGTGGGGTTGAATAA
ATTCCACGATGGTCAAGGAAAAGGAGGTGCCGCCCCTGTCCGTCTAGCCT
CCTGCCCTCGTCCCGGAGATGTCTTTTCTTTTCTCCCTCGCTATGGCCCC
TGCGATTACCTTTTATGGAAATCAGAGGCAGAAGGTAGTGCTGGGGAATG
CAGAGGGGTACTTCCAGGCTTCGGATGAATGGAAAAGGAAGAGCAGCGAC
AAGCCGAGCCGCAACTACATGCACTGGTGAAAGAGGGCTGTACCAGCAAC
AGCACCAGCGCTACTGCTGCAGGCGGGAACCATTCAAGAGAAAAATGGAA
GAAAAAGGCGGAGCATTCCATTCGTATCTCAAATTTTCAGTTCGTGCCGT
CCTCTCTCACGGTTGGCGTTGGCGACACCGTCACGTGGAAGGTCGGTGAC
GATGCGATGGGCTGTCAAGAACACGTCATCCAGGGCTTGGTGTCCCCCCC
TCCCACCCCCTCTCCTCCCTCAATTTCCTCCCAAGGAGCGGAACTCGGGG
TTTATTGTTTATTGTTTGAGTCTCCACCGTTACAGAGGGGCGAGACATGG
ATGTTAGAGCTGACCGAGACCACCACCGGCTTTACAAGGACCATGATCGA
AGGAGGAGGTAAGGTGCTTCTCCGCTGTCAAAACTACCCGGAAGACCTGA
GGGGGGTTCTGGAGGTGCGGCCTTCTCTCCCGCCCTCGTCCTTGCTGAAG
GAGGAGGGAGGGAAGGAGGGAGGTGGTTTGGTGGATGATATGGCTGTAGG
AAATGGAGAAGGAGGACAAGGAGGAAGGAAGAGGAAAAAGAGAAAGAAGC
GGAGGAAGGGTGGGAAGCATGAAGAGGACGAATGGGATGGAGTGAAGCTG
GAAGGGAAGGAGGGAGAGACGAGTGGTACAGCTGCTGCTGCTTTCAGCAC
TGTGACGAAGCAGGAGGAGGAGAATCTGTATATGCCCTGTAGCATCACCA
GCGTCAACAACAACCACAGCAGCGGCAACGGCAGCAGCAGCTCCATGGGG
CCTTTTGATCCAGGAGAAACGGGGAGCACAACGACTACAGATGTCGGCTT
CCCTCCTCTCCGCACCTGCACCAGCGCCAAGCCCAGGAAACCTTTCTTCT
CCAGCATTAATAACAACAATAAGACAATCAACAATTACGACATCACCACC
TCTCCTACTACCACCACCACTGGCCCCTATTCCACCTCCGCCTTCACCCC
CCTCCCTTCCTCCTCCCTCTCCCTCCTCGCCCTGACCAAGATGGCGAAAG
ACGGTCTCCATCCCCTTTGGGCCCCTGAGGGATTAACCCTTCCCCGCGTC
CAGCTAACGCATGAGACGTTACTGGGGACCGAGGTCGTTACAGTGCCCGT
TGGAACAACGGTCGAATGGGTCCTCCACCTCCCCACCAAGCGAGTCCTCC
CTTCCTGCTCCTCCTCCTTCTCCTCCTCGCAACAGCAGCAGAAGCAGCAG
CAGTTGCATCGTCTGATCGTGGGGTTGAATAAATTCCACGATGGTCAAGG
AAAAGGAGGTGCCGCCCCTGTCCGTCTAGCCTCCTGCCCTCGTCCCGGAG
ATGTCTTTTCTTTT
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Synonyms
Publications