jgi.p|Nanoce1779_2|588391, mRNA_4218 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588391
Unique NamemRNA_4218
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1223
Alignment locationscaffold_10:36563..37960 -

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Properties
Property NameValue
TranscriptId588477
TrackFilteredModels2
ProteinId588391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:36563..37960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588391gene_4218Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588391mRNA_4218-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4218CDS_4218Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4218 ID=mRNA_4218|Name=jgi.p|Nanoce1779_2|588391|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
ACAGGCACTGCGCAAACGAGGGTTACAATCGCGACGGGACTCGCCACTCC
CTCCCAATTCATGCCACGCAGTCGCAGCCGGAGCCCTACAAGACGAAGCA
GGAGCAAGTCTTACAGCCCTCGTCCATTATCCTCTTCACGGCATCGTGGC
CATAGTTCAAGGGAGAGGGAAAGAGGCAGATATGGAGAGGAAAGCAGCTC
CAGCAGCAGCAGGAGGAGAGGGAGGGAGGGCCGAGACAGGGATAGGGACA
CTGATCGGGCAAGGAGAGAGGAGAGGAGGGATAAAGCGTGGCCATCCCCT
CCTCGAAGAGAACAAGGACGAGGGAAAGAGACAAGATGGGGAGAGCGTCC
AGTTAATGATGATGGTGATGTCCCAAGCCTTGCCGAGAAAGACGAGGCTA
GGCGTGAGCGCACGGGACAGCGAGGGGACGGTGGATTCGGGGACCGACCA
AAAGGGTCAGCTGGAATGAGAGATAGGGGAGATAAACAACGAGAAGAAAA
GAGGTGCGAGCGGCCAGTGCCATTCGGCGAGAAGCCGAAGGACCAAGAGG
CACGCTACGAATGGGGCAAGCCAGCCCACACCGACGACCAAGAAGGAGGC
AGCGAAGGAGGAGAAGGAGGGGGTGAAGGAGGAAAACCCAAGGCGCCACA
GCTGGTAGCAAAGCCAAATTTTGGCCTGACGGGCGCGCTGGCCACCGATT
CTCAGACAGGGAACGTATACAAGGGCGTGGTGCTGAAGTGGACCGAGCCA
GATGACGCCCGCAAACCAGAGAAGGGATGGCGGTTGTATGTCTTCAAGGA
GGGGGTGCTAAAAGATACATTGCATTTGCACAGACAAAGTGCGTATTTGG
TGGGGAGGCATGACGTGGCCGATCTCAAAATAGAACACCCGAGCTGTTCG
AAGCAGCATGCGGTGCTTCAGTTCAGGCGGCGGGAGGAGGAGGGGGGGGC
GGCGGTAGTAAAGCCTTATTTGATGGACTTGGAGAGCGTGAACAAGACGA
GGTTGAATGGGGAGGAGATTCCACCGGCGCGCTACGTGGAGTTACGGCCT
CAAGACATGATTCAGTTTGGGCTGTCGAGTCGGGAGTACGTCCTGATGCA
CGAGGACATGGTGTCAGGAGGCTCGTGAGAACAAAACAGTTAAATTGGAA
AGGAACGGATCAAGACGATATCAATGTCAATTTATGTACATGGTCTCTCT
AGCGGAGTCCTTGGGAAATGGTC
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protein sequence of jgi.p|Nanoce1779_2|588391

>mRNA_4218-protein ID=mRNA_4218-protein|Name=jgi.p|Nanoce1779_2|588391|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MPRSRSRSPTRRSRSKSYSPRPLSSSRHRGHSSRERERGRYGEESSSSSS
RRRGREGRDRDRDTDRARREERRDKAWPSPPRREQGRGKETRWGERPVND
DGDVPSLAEKDEARRERTGQRGDGGFGDRPKGSAGMRDRGDKQREEKRCE
RPVPFGEKPKDQEARYEWGKPAHTDDQEGGSEGGEGGGEGGKPKAPQLVA
KPNFGLTGALATDSQTGNVYKGVVLKWTEPDDARKPEKGWRLYVFKEGVL
KDTLHLHRQSAYLVGRHDVADLKIEHPSCSKQHAVLQFRRREEEGGAAVV
KPYLMDLESVNKTRLNGEEIPPARYVELRPQDMIQFGLSSREYVLMHEDM
VSGGS*
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mRNA from alignment at scaffold_10:36563..37960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4218 ID=mRNA_4218|Name=jgi.p|Nanoce1779_2|588391|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at scaffold_10:36563..37960- (Nannochloropsis oceanica)
ACAGGCACTGCGCAAACGAGGGTTACAATCGCGACGGGACTCGCCACTCC
CTCCCAATTCATGCCACGCAGTCGCAGCCGGAGCCCTACAAGACGAAGCA
GGAGCAAGTCTTACAGCCCTCGTCCATTATCCTCTTCACGGCATCGTGGC
CATAGTTCAAGGGAGAGGGAAAGAGGCAGATATGGAGAGGAAAGCAGCTC
CAGCAGCAGCAGGAGGAGAGGGAGGGAGGGCCGAGACAGGGATAGGGACA
CTGATCGGGCAAGGAGAGAGGAGAGGAGGGATAAAGCGTGGCCATCCCCT
CCTCGAAGAGAACAAGGACGAGGGAAAGAGACAAGATGGGGAGAGCGTCC
AGTTAATGATGATGGTGATGTCCCAAGCCTTGCCGAGAAAGACGAGGCTA
GGCGTGAGCGCACGGGACAGCGAGGGGACGGTGGATTCGGGGACCGACCA
AAAGGGTCAGCTGGAATGAGAGATAGGGGAGATAAACAACGAGAAGAAAA
GAGGTGCGAGCGGCCAGTGCCATTCGGCGAGAAGCCGAAGGACCAAGAGG
CACGCTAGTGAGTACAAAGGAGTTGACAGGATGGGTGAAATTAGATGATG
TCATATGTCCTATGTGGTTGCAGTCGATCTCACCCTAAAGTGTTCCTTCC
CTTCTAAAGTCCTTTACTCACATTACATACTCACACGCACCACCCGTCTC
TCCCTCCCCCTCCCTACCACTTACCCTGTCAGCGAATGGGGCAAGCCAGC
CCACACCGACGACCAAGAAGGAGGCAGCGAAGGAGGAGAAGGAGGGGGTG
AAGGAGGAAAACCCAAGGCGCCACAGCTGGTAGCAAAGCCAAATTTTGGC
CTGACGGGCGCGCTGGCCACCGATTCTCAGACAGGGAACGTATACAAGGG
CGTGGTGCTGAAGTGGACCGAGCCAGATGACGCCCGCAAACCAGAGAAGG
GATGGCGGTTGTATGTCTTCAAGGAGGGGGTGCTAAAAGATACATTGCAT
TTGCACAGACAAAGTGCGTATTTGGTGGGGAGGCATGACGTGGCCGATCT
CAAAATAGAACACCCGAGCTGTTCGAAGCAGCATGCGGTGCTTCAGTTCA
GGCGGCGGGAGGAGGAGGGGGGGGCGGCGGTAGTAAAGCCTTATTTGATG
GACTTGGAGAGCGTGAACAAGACGAGGTTGAATGGGGAGGAGATTCCACC
GGCGCGCTACGTGGAGTTACGGCCTCAAGACATGATTCAGTTTGGGCTGT
CGAGTCGGGAGTACGTCCTGATGCACGAGGACATGGTGTCAGGAGGCTCG
TGAGAACAAAACAGTTAAATTGGAAAGGAACGGATCAAGACGATATCAAT
GTCAATTTATGTACATGGTCTCTCTAGCGGAGTCCTTGGGAAATGGTC
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Coding sequence (CDS) from alignment at scaffold_10:36563..37960-

>mRNA_4218 ID=mRNA_4218|Name=jgi.p|Nanoce1779_2|588391|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_10:36563..37960- (Nannochloropsis oceanica)
CGAATGGGGCAAGCCAGCCCACACCGACGACCAAGAAGGAGGCAGCGAAG
GAGGAGAAGGAGGGGGTGAAGGAGGAAAACCCAAGGCGCCACAGCTGGTA
GCAAAGCCAAATTTTGGCCTGACGGGCGCGCTGGCCACCGATTCTCAGAC
AGGGAACGTATACAAGGGCGTGGTGCTGAAGTGGACCGAGCCAGATGACG
CCCGCAAACCAGAGAAGGGATGGCGGTTGTATGTCTTCAAGGAGGGGGTG
CTAAAAGATACATTGCATTTGCACAGACAAAGTGCGTATTTGGTGGGGAG
GCATGACGTGGCCGATCTCAAAATAGAACACCCGAGCTGTTCGAAGCAGC
ATGCGGTGCTTCAGTTCAGGCGGCGGGAGGAGGAGGGGGGGGCGGCGGTA
GTAAAGCCTTATTTGATGGACTTGGAGAGCGTGAACAAGACGAGGTTGAA
TGGGGAGGAGATTCCACCGGCGCGCTACGTGGAGTTACGGCCTCAAGACA
TGATTCAGTTTGGGCTGTCGAGTCGGGAGTACGTCCTGATGCACGAGGAC
ATGGTGTCAGGAGGCTCGTGAATGCCACGCAGTCGCAGCCGGAGCCCTAC
AAGACGAAGCAGGAGCAAGTCTTACAGCCCTCGTCCATTATCCTCTTCAC
GGCATCGTGGCCATAGTTCAAGGGAGAGGGAAAGAGGCAGATATGGAGAG
GAAAGCAGCTCCAGCAGCAGCAGGAGGAGAGGGAGGGAGGGCCGAGACAG
GGATAGGGACACTGATCGGGCAAGGAGAGAGGAGAGGAGGGATAAAGCGT
GGCCATCCCCTCCTCGAAGAGAACAAGGACGAGGGAAAGAGACAAGATGG
GGAGAGCGTCCAGTTAATGATGATGGTGATGTCCCAAGCCTTGCCGAGAA
AGACGAGGCTAGGCGTGAGCGCACGGGACAGCGAGGGGACGGTGGATTCG
GGGACCGACCAAAAGGGTCAGCTGGAATGAGAGATAGGGGAGATAAACAA
CGAGAAGAAAAGAGGTGCGAGCGGCCAGTGCCATTCGGCGAGAAGCCGAA
GGACCAAGAGGCACGCTACGAATGGGGCAAGCCAGCCCACACCGACGACC
AAGAAGGAGGCAGCGAAGGAGGAGAAGGAGGGGGTGAAGGAGGAAAACCC
AAGGCGCCACAGCTGGTAGCAAAGCCAAATTTTGGCCTGACGGGCGCGCT
GGCCACCGATTCTCAGACAGGGAACGTATACAAGGGCGTGGTGCTGAAGT
GGACCGAGCCAGATGACGCCCGCAAACCAGAGAAGGGATGGCGGTTGTAT
GTCTTCAAGGAGGGGGTGCTAAAAGATACATTGCATTTGCACAGACAAAG
TGCGTATTTGGTGGGGAGGCATGACGTGGCCGATCTCAAAATAGAACACC
CGAGCTGTTCGAAGCAGCATGCGGTGCTTCAGTTCAGGCGGCGGGAGGAG
GAGGGGGGGGCGGCGGTAGTAAAGCCTTATTTGATGGACTTGGAGAGCGT
GAACAAGACGAGGTTGAATGGGGAGGAGATTCCACCGGCGCGCTACGTGG
AGTTACGGCCTCAAGACATGATTCAGTTTGGGCTGTCGAGTCGGGAGTAC
GTCCTGATGCACGAGGACATGGTGTCAGGAGGCTCGTGAATGCCACGCAG
TCGCAGCCGGAGCCCTACAAGACGAAGCAGGAGCAAGTCTTACAGCCCTC
GTCCATTATCCTCTTCACGGCATCGTGGCCATAGTTCAAGGGAGAGGGAA
AGAGGCAGATATGGAGAGGAAAGCAGCTCCAGCAGCAGCAGGAGGAGAGG
GAGGGAGGGCCGAGACAGGGATAGGGACACTGATCGGGCAAGGAGAGAGG
AGAGGAGGGATAAAGCGTGGCCATCCCCTCCTCGAAGAGAACAAGGACGA
GGGAAAGAGACAAGATGGGGAGAGCGTCCAGTTAATGATGATGGTGATGT
CCCAAGCCTTGCCGAGAAAGACGAGGCTAGGCGTGAGCGCACGGGACAGC
GAGGGGACGGTGGATTCGGGGACCGACCAAAAGGGTCAGCTGGAATGAGA
GATAGGGGAGATAAACAACGAGAAGAAAAGAGGTGCGAGCGGCCAGTGCC
ATTCGGCGAGAAGCCGAAGGACCAAGAGGCACGCTA
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Synonyms
Publications