jgi.p|Nanoce1779_2|589323, mRNA_4497 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589323
Unique NamemRNA_4497
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1696
Alignment locationscaffold_10:747191..748886 -

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Properties
Property NameValue
TranscriptId589409
TrackFilteredModels2
ProteinId589323
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:747191..748886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589323gene_4497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589323mRNA_4497-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4497CDS_4497Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4497 ID=mRNA_4497|Name=jgi.p|Nanoce1779_2|589323|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp
ACAACAGTAGCAGAAATGGGACAGCGACTGAGCGCCCGCAAGTGTGGGGG
AGGGAGCGCGGACCAGGGTGCCGATGCATTGCTCTGGGACCTTTTCCCGA
CTTCCATTTCGAACCCAGCCACCCTTTCTGAAGACCCAGAAGAAACGCGC
TTGCACGCGTCCATGGCAGAGCTTCTACGAGAAAGTGTATTTTGCCTACG
GGCCGTCCGCGAGTACAAGGAGAATACAGAGTTGCTGCGCGCCGCCATGG
CGTCGCCCAAGGATGAAGTCCTCCAACTCCAGGGGTTTTCCTCCCTCTTG
CCGAGTATTGTCAACATAAAAAGGGCATACGACCTCTCCACACGCCTAGC
CGACGAGCTTCCCCGTCTCCTAAGCTATCTAGCGGCACGAAGAGCAAGTT
TACGGAAGCATCCAGCCCTCTTCAAGCAGCTAGCAGACGTCCTCGAGTTT
TCCCTGTCGTTTGATTTCGAAAAAATGGGACGGCCCGCGCTGCAAAATGA
TTTTTCGTACTACAGGCGTTATCTTGGCAGGATGGCTCCTTTGATAGGCG
GAGGGGGGCTCGCGGTGCCAGAGGCCGAAGCGGGGATCATCTCACTTTTT
ATGGCGCAGAGCTTGCCGATGACGATGACTGTGGAAAAGGCCTTGAAGGA
TGTTAGTAAGGCGCCAGCAGGAGAGGGGTTGGGCAGTGTATCTCAATCGG
TGCAGCTGGTGGGGTTACTGGCGAATGTGACATGTGATTTGGCGTTAAGG
CCGGGGGTGGACGATGAGCTGCGGTGGTATGCCTTGCGGGTGATGACCTC
CTCAGTAGTGATCTACGACCGAGTGAGTGAAACTGGGGTGTTTAACCGTC
GGTCACCCGTGAGGACACGGAAGTGCCTGCGGACCCTCCGGAAAGAGCAG
GAAGGTACAACAGGGGCAAGTGAAAATGTGTCATCATCGGTCCCCCTGGC
GAAGCAATTGCTTGATTCGGTCAAGTATTCCACCCTTCATCTCCGGGATG
GGTCCACCCCCGGCTACATCCGCACCCTTTTGAGCGACTAGGAGGAGGGG
TGGCGAAATAGTGAGGGGGAAACCTTATAAGGGGCATTTGTGCATATATG
TATACATATATATTTGTTTGCCACAAAATAAGAAGGGAAGAGAGGCAGCA
AGACGGAAAGCCGTGGCGGGTGAGGAAAGTGAAGGAAGTGTGTGTGGAAG
TGAGTGGAAGTGTAGAAGAGAGTGCGTGTGTATGATAGGAAGTGTTTCTG
GTGGCTGGCTTGACCAATGTTGTTGTCATGCCCTCTCACCCAATGAACAA
ACAAAACGATCAAGTTTTTAGTTACAAGGAGCGAGGCTTGAAGTGTGTGC
AACCTGGTCTTATCCTACATAAACACATTTCTCCATTTTCATATATCGTG
TTGCTGTCCTTGCTTTGTATGCGTGTATGACTGTTTTGTGAGGGAAAGCT
AGGTTGGCCCCACTGGTCCCTACTGGAACCCACTGGAACCCACTGGAAGG
CCACGAACAGGACATACCGACCTGGCTTCCTTCTCCAATTTTGACCTGCT
CCAGATCTAGCCATATCTAGCCCTCCCTCTCACATGCTGCTCACTTCATC
TTCCTCTCCCCTTCAACACGAAACACAGACCACCAACGTGATGAAGAGTA
TGTCCGCGGCTTTCGCCATTTCCATCGTCATCGGATCTAACCGTGG
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protein sequence of jgi.p|Nanoce1779_2|589323

>mRNA_4497-protein ID=mRNA_4497-protein|Name=jgi.p|Nanoce1779_2|589323|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MGQRLSARKCGGGSADQGADALLWDLFPTSISNPATLSEDPEETRLHASM
AELLRESVFCLRAVREYKENTELLRAAMASPKDEVLQLQGFSSLLPSIVN
IKRAYDLSTRLADELPRLLSYLAARRASLRKHPALFKQLADVLEFSLSFD
FEKMGRPALQNDFSYYRRYLGRMAPLIGGGGLAVPEAEAGIISLFMAQSL
PMTMTVEKALKDVSKAPAGEGLGSVSQSVQLVGLLANVTCDLALRPGVDD
ELRWYALRVMTSSVVIYDRVSETGVFNRRSPVRTRKCLRTLRKEQEGTTG
ASENVSSSVPLAKQLLDSVKYSTLHLRDGSTPGYIRTLLSD*
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mRNA from alignment at scaffold_10:747191..748886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4497 ID=mRNA_4497|Name=jgi.p|Nanoce1779_2|589323|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp|location=Sequence derived from alignment at scaffold_10:747191..748886- (Nannochloropsis oceanica)
ACAACAGTAGCAGAAATGGGACAGCGACTGAGCGCCCGCAAGTGTGGGGG
AGGGAGCGCGGACCAGGGTGCCGATGCATTGCTCTGGGACCTTTTCCCGA
CTTCCATTTCGAACCCAGCCACCCTTTCTGAAGACCCAGAAGAAACGCGC
TTGCACGCGTCCATGGCAGAGCTTCTACGAGAAAGTGTATTTTGCCTACG
GGCCGTCCGCGAGTACAAGGAGAATACAGAGTTGCTGCGCGCCGCCATGG
CGTCGCCCAAGGATGAAGTCCTCCAACTCCAGGGGTTTTCCTCCCTCTTG
CCGAGTATTGTCAACATAAAAAGGGCATACGACCTCTCCACACGCCTAGC
CGACGAGCTTCCCCGTCTCCTAAGCTATCTAGCGGCACGAAGAGCAAGTT
TACGGAAGCATCCAGCCCTCTTCAAGCAGCTAGCAGACGTCCTCGAGTTT
TCCCTGTCGTTTGATTTCGAAAAAATGGGACGGCCCGCGCTGCAAAATGA
TTTTTCGTACTACAGGCGTTATCTTGGCAGGATGGCTCCTTTGATAGGCG
GAGGGGGGCTCGCGGTGCCAGAGGCCGAAGCGGGGATCATCTCACTTTTT
ATGGCGCAGAGCTTGCCGATGACGATGACTGTGGAAAAGGCCTTGAAGGA
TGTTAGTAAGGCGCCAGCAGGAGAGGGGTTGGGCAGTGTATCTCAATCGG
TGCAGCTGGTGGGGTTACTGGCGAATGTGACATGTGATTTGGCGTTAAGG
CCGGGGGTGGACGATGAGCTGCGGTGGTATGCCTTGCGGGTGATGACCTC
CTCAGTAGTGATCTACGACCGAGTGAGTGAAACTGGGGTGTTTAACCGTC
GGTCACCCGTGAGGACACGGAAGTGCCTGCGGACCCTCCGGAAAGAGCAG
GAAGGTACAACAGGGGCAAGTGAAAATGTGTCATCATCGGTCCCCCTGGC
GAAGCAATTGCTTGATTCGGTCAAGTATTCCACCCTTCATCTCCGGGATG
GGTCCACCCCCGGCTACATCCGCACCCTTTTGAGCGACTAGGAGGAGGGG
TGGCGAAATAGTGAGGGGGAAACCTTATAAGGGGCATTTGTGCATATATG
TATACATATATATTTGTTTGCCACAAAATAAGAAGGGAAGAGAGGCAGCA
AGACGGAAAGCCGTGGCGGGTGAGGAAAGTGAAGGAAGTGTGTGTGGAAG
TGAGTGGAAGTGTAGAAGAGAGTGCGTGTGTATGATAGGAAGTGTTTCTG
GTGGCTGGCTTGACCAATGTTGTTGTCATGCCCTCTCACCCAATGAACAA
ACAAAACGATCAAGTTTTTAGTTACAAGGAGCGAGGCTTGAAGTGTGTGC
AACCTGGTCTTATCCTACATAAACACATTTCTCCATTTTCATATATCGTG
TTGCTGTCCTTGCTTTGTATGCGTGTATGACTGTTTTGTGAGGGAAAGCT
AGGTTGGCCCCACTGGTCCCTACTGGAACCCACTGGAACCCACTGGAAGG
CCACGAACAGGACATACCGACCTGGCTTCCTTCTCCAATTTTGACCTGCT
CCAGATCTAGCCATATCTAGCCCTCCCTCTCACATGCTGCTCACTTCATC
TTCCTCTCCCCTTCAACACGAAACACAGACCACCAACGTGATGAAGAGTA
TGTCCGCGGCTTTCGCCATTTCCATCGTCATCGGATCTAACCGTGG
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Coding sequence (CDS) from alignment at scaffold_10:747191..748886-

>mRNA_4497 ID=mRNA_4497|Name=jgi.p|Nanoce1779_2|589323|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_10:747191..748886- (Nannochloropsis oceanica)
ATGGGACAGCGACTGAGCGCCCGCAAGTGTGGGGGAGGGAGCGCGGACCA
GGGTGCCGATGCATTGCTCTGGGACCTTTTCCCGACTTCCATTTCGAACC
CAGCCACCCTTTCTGAAGACCCAGAAGAAACGCGCTTGCACGCGTCCATG
GCAGAGCTTCTACGAGAAAGTGTATTTTGCCTACGGGCCGTCCGCGAGTA
CAAGGAGAATACAGAGTTGCTGCGCGCCGCCATGGCGTCGCCCAAGGATG
AAGTCCTCCAACTCCAGGGGTTTTCCTCCCTCTTGCCGAGTATTGTCAAC
ATAAAAAGGGCATACGACCTCTCCACACGCCTAGCCGACGAGCTTCCCCG
TCTCCTAAGCTATCTAGCGGCACGAAGAGCAAGTTTACGGAAGCATCCAG
CCCTCTTCAAGCAGCTAGCAGACGTCCTCGAGTTTTCCCTGTCGTTTGAT
TTCGAAAAAATGGGACGGCCCGCGCTGCAAAATGATTTTTCGTACTACAG
GCGTTATCTTGGCAGGATGGCTCCTTTGATAGGCGGAGGGGGGCTCGCGG
TGCCAGAGGCCGAAGCGGGGATCATCTCACTTTTTATGGCGCAGAGCTTG
CCGATGACGATGACTGTGGAAAAGGCCTTGAAGGATGTTAGTAAGGCGCC
AGCAGGAGAGGGGTTGGGCAGTGTATCTCAATCGGTGCAGCTGGTGGGGT
TACTGGCGAATGTGACATGTGATTTGGCGTTAAGGCCGGGGGTGGACGAT
GAGCTGCGGTGGTATGCCTTGCGGGTGATGACCTCCTCAGTAGTGATCTA
CGACCGAGTGAGTGAAACTGGGGTGTTTAACCGTCGGTCACCCGTGAGGA
CACGGAAGTGCCTGCGGACCCTCCGGAAAGAGCAGGAAGGTACAACAGGG
GCAAGTGAAAATGTGTCATCATCGGTCCCCCTGGCGAAGCAATTGCTTGA
TTCGGTCAAGTATTCCACCCTTCATCTCCGGGATGGGTCCACCCCCGGCT
ACATCCGCACCCTTTTGAGCGACTAG
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Synonyms
Publications