jgi.p|Nanoce1779_2|589715, mRNA_5605 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589715
Unique Name	mRNA_5605
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1089
Alignment location	scaffold_11:98341..99429 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589801
Track	FilteredModels2
ProteinId	589715

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:98341..99429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589715	gene_5605	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589715	mRNA_5605-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5605	CDS_5605	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:98341..99429+
coding sequence from alignment at scaffold_11:98341..99429+

mRNA sequence

>mRNA_5605 ID=mRNA_5605|Name=jgi.p|Nanoce1779_2|589715|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ACAGTGTACACACAACGCTTTCCCTGCTTTACATACCTTTCTGTACCTTT
CCCCACTGGAGAGCCCTAAACTCTTCCGTCTTTGCTGTCGTGGTCGCCTG
CCCTGGCCCGCTCAAGCGAGTGGCCCCGTGCTCATCGTAAAAGCAGCGCA
TAATGAAACTTCTCCGCCAATTCCCCCTCCTCCTTTCCCTCCTCGCCATT
ACCCTCCCCCTCTCGCGCGCTTACGGTGACAACTACACCTGCCACTTCGC
GCCATCCGTTCCTGAAGACCGTCGGCCAAACCCGAATCGCCTCCGCCTCG
TGCAGTATAATGTCGACTTCTTTTTTCTTGATCAGAGCAGTGGGGGCTTG
GTGTGTCCTGGCACCGACTGTCCCTGGCCCGACGCTGCCACAGCGCAAGC
CCATGCTTTGCGAGTGGCGACCGTGCTGAAGGAGCTGAGGCCCGACATCG
TAAATTTGTGTGAGGTGGAAGGCTGCGATGAGATGCAGTGGCTCGCGCGG
CATTTAAATGATGCGGAAAGCGAGGAAGAGATGGAGAGGGGGGATGGAGG
TAGGGAGCGCCAAGGTGGGTTCTACAACTACTATTTACTCAAGGGACAGG
ACACGTTCACGGTAGGTAATGTAGAAGCTATGAGCATCAGGTGGGACTGA
CAAGCTCGGAAAAAGCGTGGATTTCAACCTTTGACGGGAATTCAGCCGTT
CGCTTGTGAAATTTGAGCAGGTCTGGTCATTTGAAGCCTCCGAAAGGGCC
TCTGGAGTTGTAGGTGTGGACCTCGCCTCTTGTGCCTGCACTCATAGTCA
CCTGGTTCTGGGCTCCGGAGTATGTGTATGTGTAGAAAGAGAGGGGAATT
GTTCGTGCACACAGTGTTTCTTGTGTGCCGTGCCTTTGTTTACAATAAAC
GCCCCCCCACCCATACCATAGCGCAAGCCCACCACCCCACCACATTCTTC
CGTCTGCTTTCCTATTAATATTACAAATAATTCCATAAATACAGGGACAA
AACACAGCTCTTCTAACGCGAGTGGACCCCTCCATGAATCTCAATAGGTC
TATATCCACCTATCCTTATCCCTTGCCGGGCACGCAGTG

protein sequence of jgi.p|Nanoce1779_2|589715

>mRNA_5605-protein ID=mRNA_5605-protein|Name=jgi.p|Nanoce1779_2|589715|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MKLLRQFPLLLSLLAITLPLSRAYGDNYTCHFAPSVPEDRRPNPNRLRLV
QYNVDFFFLDQSSGGLVCPGTDCPWPDAATAQAHALRVATVLKELRPDIV
NLCEVEGCDEMQWLARHLNDAESEEEMERGDGGRERQGGFYNYYLLKGQD
TFTVGNVEAMSIRWD*

mRNA from alignment at scaffold_11:98341..99429+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5605 ID=mRNA_5605|Name=jgi.p|Nanoce1779_2|589715|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp|location=Sequence derived from alignment at scaffold_11:98341..99429+ (Nannochloropsis oceanica)
ACAGTGTACACACAACGCTTTCCCTGCTTTACATACCTTTCTGTACCTTT
CCCCACTGGAGAGCCCTAAACTCTTCCGTCTTTGCTGTCGTGGTCGCCTG
CCCTGGCCCGCTCAAGCGAGTGGCCCCGTGCTCATCGTAAAAGCAGCGCA
TAATGAAACTTCTCCGCCAATTCCCCCTCCTCCTTTCCCTCCTCGCCATT
ACCCTCCCCCTCTCGCGCGCTTACGGTGACAACTACACCTGCCACTTCGC
GCCATCCGTTCCTGAAGACCGTCGGCCAAACCCGAATCGCCTCCGCCTCG
TGCAGTATAATGTCGACTTCTTTTTTCTTGATCAGAGCAGTGGGGGCTTG
GTGTGTCCTGGCACCGACTGTCCCTGGCCCGACGCTGCCACAGCGCAAGC
CCATGCTTTGCGAGTGGCGACCGTGCTGAAGGAGCTGAGGCCCGACATCG
TAAATTTGTGTGAGGTGGAAGGCTGCGATGAGATGCAGTGGCTCGCGCGG
CATTTAAATGATGCGGAAAGCGAGGAAGAGATGGAGAGGGGGGATGGAGG
TAGGGAGCGCCAAGGTGGGTTCTACAACTACTATTTACTCAAGGGACAGG
ACACGTTCACGGTAGGTAATGTAGAAGCTATGAGCATCAGGTGGGACTGA
CAAGCTCGGAAAAAGCGTGGATTTCAACCTTTGACGGGAATTCAGCCGTT
CGCTTGTGAAATTTGAGCAGGTCTGGTCATTTGAAGCCTCCGAAAGGGCC
TCTGGAGTTGTAGGTGTGGACCTCGCCTCTTGTGCCTGCACTCATAGTCA
CCTGGTTCTGGGCTCCGGAGTATGTGTATGTGTAGAAAGAGAGGGGAATT
GTTCGTGCACACAGTGTTTCTTGTGTGCCGTGCCTTTGTTTACAATAAAC
GCCCCCCCACCCATACCATAGCGCAAGCCCACCACCCCACCACATTCTTC
CGTCTGCTTTCCTATTAATATTACAAATAATTCCATAAATACAGGGACAA
AACACAGCTCTTCTAACGCGAGTGGACCCCTCCATGAATCTCAATAGGTC
TATATCCACCTATCCTTATCCCTTGCCGGGCACGCAGTG

Coding sequence (CDS) from alignment at scaffold_11:98341..99429+

>mRNA_5605 ID=mRNA_5605|Name=jgi.p|Nanoce1779_2|589715|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_11:98341..99429+ (Nannochloropsis oceanica)
ATGAAACTTCTCCGCCAATTCCCCCTCCTCCTTTCCCTCCTCGCCATTAC
CCTCCCCCTCTCGCGCGCTTACGGTGACAACTACACCTGCCACTTCGCGC
CATCCGTTCCTGAAGACCGTCGGCCAAACCCGAATCGCCTCCGCCTCGTG
CAGTATAATGTCGACTTCTTTTTTCTTGATCAGAGCAGTGGGGGCTTGGT
GTGTCCTGGCACCGACTGTCCCTGGCCCGACGCTGCCACAGCGCAAGCCC
ATGCTTTGCGAGTGGCGACCGTGCTGAAGGAGCTGAGGCCCGACATCGTA
AATTTGTGTGAGGTGGAAGGCTGCGATGAGATGCAGTGGCTCGCGCGGCA
TTTAAATGATGCGGAAAGCGAGGAAGAGATGGAGAGGGGGGATGGAGGTA
GGGAGCGCCAAGGTGGGTTCTACAACTACTATTTACTCAAGGGACAGGAC
ACGTTCACGGTAGGTAATGTAGAAGCTATGAGCATCAGGTGGGACTGA

Synonyms

Publications