jgi.p|Nanoce1779_2|590093, mRNA_5717 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590093
Unique Name	mRNA_5717
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	937
Alignment location	scaffold_11:404200..405136 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590179
Track	FilteredModels2
ProteinId	590093

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:404200..405136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590093	gene_5717	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590093	mRNA_5717-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5717	CDS_5717	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:404200..405136-
coding sequence from alignment at scaffold_11:404200..405136-

mRNA sequence

>mRNA_5717 ID=mRNA_5717|Name=jgi.p|Nanoce1779_2|590093|organism=Nannochloropsis oceanica|type=mRNA|length=937bp
TGGTGGCAAACCTGTTCACTGCCTCCTTGGCCGTGATGATGCGCTTCCCG
CTGGACTGGGCGATTGTCGTGAGGGAGTACTTCTCAGGTTCGAATGCCAT
CGGCCCCTACCTGTGCGCACGCTTTATCGTGGACGCCCCCATGGCCTACG
GACCCTTTCTACTTATCACCCTATTGTACTGGATGACGGGCATGGATTCG
GACATCCGCAAGTTTATCATCTTCGCGCTCACCTTCATCTCGGGCAACTG
GGCCGCCTCCTCCATGGGGATGTTCGTCTCCTCCTTCTCTGCCAATCCCT
TCATCGGTCTGACCATCCTCCCCGCCTTTGTCGCGCCCATGATCATGTTC
TCTGGTATTCTGTACGAACGATCTTCTGTGCCGGATTGGTTGAGCTGGCT
GCAGACCCTGTCCCTCGTCAACTACACGTTTTCTGCACTCATGATCCAGC
AGATCCACATCCTGCCCAAGCCTTTGGCTCTCCTCGTCATGCAATTCGTG
GAGCTCAATCCCGGTGACATGGGCTGGGACATTGCCATGCTATGGATCAT
GAACTTCGGTTTCCAGGTCCTCACCTACATCAATCTCTCACTCCGCCTCC
GATTCGCCACAGGATAAAGCTAGACGGTTGGAAAGAAGGGGAAAGAGGAA
TCGAGGGATGAAGGACACTATAGTAGCAGCAGCGTGTTAAATGGACAAGT
GAGAAGGCTAGAGAAGGCTAAGGCACCAATCAAATCCGAAGGGGTGCAGG
AGAGTGGTACGAGGGGTTAGAATTCAGTTTCAAAAAGGATTAGTGTGAGA
AGAAAGAGGTGTGTGAGGAGAAAGAGGAAAAGAGAATCGGACAAAGAGAG
AGCGAGAGGAGGAGAAAGAGAGGGAGGGAGGGGGCGGGGGCTGGAAGTTT
GGAAATGTGAAAAGAGATAGCGACACATTTTCCCTCC

protein sequence of jgi.p|Nanoce1779_2|590093

>mRNA_5717-protein ID=mRNA_5717-protein|Name=jgi.p|Nanoce1779_2|590093|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MMRFPLDWAIVVREYFSGSNAIGPYLCARFIVDAPMAYGPFLLITLLYWM
TGMDSDIRKFIIFALTFISGNWAASSMGMFVSSFSANPFIGLTILPAFVA
PMIMFSGILYERSSVPDWLSWLQTLSLVNYTFSALMIQQIHILPKPLALL
VMQFVELNPGDMGWDIAMLWIMNFGFQVLTYINLSLRLRFATG*

mRNA from alignment at scaffold_11:404200..405136-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5717 ID=mRNA_5717|Name=jgi.p|Nanoce1779_2|590093|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_11:404200..405136- (Nannochloropsis oceanica)
TGGTGGCAAACCTGTTCACTGCCTCCTTGGCCGTGATGATGCGCTTCCCG
CTGGACTGGGCGATTGTCGTGAGGGAGTACTTCTCAGGTTCGAATGCCAT
CGGCCCCTACCTGTGCGCACGCTTTATCGTGGACGCCCCCATGGCCTACG
GACCCTTTCTACTTATCACCCTATTGTACTGGATGACGGGCATGGATTCG
GACATCCGCAAGTTTATCATCTTCGCGCTCACCTTCATCTCGGGCAACTG
GGCCGCCTCCTCCATGGGGATGTTCGTCTCCTCCTTCTCTGCCAATCCCT
TCATCGGTCTGACCATCCTCCCCGCCTTTGTCGCGCCCATGATCATGTTC
TCTGGTATTCTGTACGAACGATCTTCTGTGCCGGATTGGTTGAGCTGGCT
GCAGACCCTGTCCCTCGTCAACTACACGTTTTCTGCACTCATGATCCAGC
AGATCCACATCCTGCCCAAGCCTTTGGCTCTCCTCGTCATGCAATTCGTG
GAGCTCAATCCCGGTGACATGGGCTGGGACATTGCCATGCTATGGATCAT
GAACTTCGGTTTCCAGGTCCTCACCTACATCAATCTCTCACTCCGCCTCC
GATTCGCCACAGGATAAAGCTAGACGGTTGGAAAGAAGGGGAAAGAGGAA
TCGAGGGATGAAGGACACTATAGTAGCAGCAGCGTGTTAAATGGACAAGT
GAGAAGGCTAGAGAAGGCTAAGGCACCAATCAAATCCGAAGGGGTGCAGG
AGAGTGGTACGAGGGGTTAGAATTCAGTTTCAAAAAGGATTAGTGTGAGA
AGAAAGAGGTGTGTGAGGAGAAAGAGGAAAAGAGAATCGGACAAAGAGAG
AGCGAGAGGAGGAGAAAGAGAGGGAGGGAGGGGGCGGGGGCTGGAAGTTT
GGAAATGTGAAAAGAGATAGCGACACATTTTCCCTCC

Coding sequence (CDS) from alignment at scaffold_11:404200..405136-

>mRNA_5717 ID=mRNA_5717|Name=jgi.p|Nanoce1779_2|590093|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_11:404200..405136- (Nannochloropsis oceanica)
ATGATGCGCTTCCCGCTGGACTGGGCGATTGTCGTGAGGGAGTACTTCTC
AGGTTCGAATGCCATCGGCCCCTACCTGTGCGCACGCTTTATCGTGGACG
CCCCCATGGCCTACGGACCCTTTCTACTTATCACCCTATTGTACTGGATG
ACGGGCATGGATTCGGACATCCGCAAGTTTATCATCTTCGCGCTCACCTT
CATCTCGGGCAACTGGGCCGCCTCCTCCATGGGGATGTTCGTCTCCTCCT
TCTCTGCCAATCCCTTCATCGGTCTGACCATCCTCCCCGCCTTTGTCGCG
CCCATGATCATGTTCTCTGGTATTCTGTACGAACGATCTTCTGTGCCGGA
TTGGTTGAGCTGGCTGCAGACCCTGTCCCTCGTCAACTACACGTTTTCTG
CACTCATGATCCAGCAGATCCACATCCTGCCCAAGCCTTTGGCTCTCCTC
GTCATGCAATTCGTGGAGCTCAATCCCGGTGACATGGGCTGGGACATTGC
CATGCTATGGATCATGAACTTCGGTTTCCAGGTCCTCACCTACATCAATC
TCTCACTCCGCCTCCGATTCGCCACAGGATAA

Synonyms

Publications